Literature DB >> 22347077

Ethyl 3-[(6-chloro-pyridin-3-yl)meth-yl]-2-oxoimidazolidine-1-carboxyl-ate.

Kamini Kapoor, Vivek K Gupta, Madhukar B Deshmukh, Chetan S Shripanavar, Rajni Kant.   

Abstract

In the title compound, C(12)H(14)ClN(3)O(3), the imidazole ring adopts a half-chair conformation. The dihedral angle between the pyridine and imidazole rings is 70.0 (1)°. In the crystal, the molecules are linked by C-H⋯O inter-actions, forming chains parallel to the c axis.

Entities:  

Year:  2012        PMID: 22347077      PMCID: PMC3275221          DOI: 10.1107/S1600536812001948

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the insecticidal applications of imidacloprid [systematic name: N-[1-[(6-chloro-3-pyrid­yl)meth­yl]-4,5-dihydro­imidazol-2-yl]nitramide], see: Samaritoni et al. (2003 ▶); Kagabu et al. (1997 ▶, 2007 ▶); Zhao et al. (2010 ▶). For ring conformations, see: Duax & Norton (1975 ▶). For related structures, see: Kapoor et al. (2011 ▶); Kant et al. (2012 ▶).

Experimental

Crystal data

C12H14ClN3O3 M = 283.71 Monoclinic, a = 13.3926 (14) Å b = 8.4991 (8) Å c = 12.3361 (12) Å β = 106.538 (10)° V = 1346.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.941, T max = 1.000 6112 measured reflections 2645 independent reflections 1537 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.191 S = 1.05 2645 reflections 173 parameters 1 restraint H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812001948/gg2073sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812001948/gg2073Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812001948/gg2073Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14ClN3O3F(000) = 592
Mr = 283.71Dx = 1.400 Mg m3
Monoclinic, P21/cMelting point: 362 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 13.3926 (14) ÅCell parameters from 1920 reflections
b = 8.4991 (8) Åθ = 3.4–29.0°
c = 12.3361 (12) ŵ = 0.29 mm1
β = 106.538 (10)°T = 293 K
V = 1346.1 (2) Å3Plate, white
Z = 40.3 × 0.2 × 0.2 mm
Oxford Diffraction Xcalibur Sapphire3 diffractometer2645 independent reflections
Radiation source: fine-focus sealed tube1537 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −15→16
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −10→9
Tmin = 0.941, Tmax = 1.000l = −15→15
6112 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.191H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0878P)2 + 0.0871P] where P = (Fo2 + 2Fc2)/3
2645 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.42 e Å3
1 restraintΔρmin = −0.21 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.37380 (8)0.08507 (14)−0.01623 (10)0.0948 (5)
O10.06757 (17)−0.2327 (3)0.42795 (18)0.0656 (7)
O20.22097 (18)−0.0437 (3)0.57542 (18)0.0692 (7)
N1−0.2183 (2)−0.0963 (4)−0.0205 (2)0.0647 (8)
C2−0.1521 (3)−0.1394 (4)0.2107 (3)0.0606 (9)
H2−0.1303−0.15400.28870.073*
C3−0.0976 (2)−0.2097 (3)0.1434 (2)0.0488 (8)
C4−0.1347 (3)−0.1827 (4)0.0290 (3)0.0597 (9)
H4−0.0987−0.2282−0.01730.072*
C5−0.2373 (3)−0.0491 (4)0.1629 (3)0.0626 (9)
H5−0.2745−0.00060.20700.075*
C6−0.2664 (2)−0.0322 (4)0.0476 (3)0.0585 (9)
C7−0.0017 (2)−0.3089 (4)0.1925 (3)0.0588 (9)
H7A−0.0165−0.38410.24510.071*
H7B0.0140−0.36770.13200.071*
N80.0890 (2)−0.2170 (3)0.2508 (2)0.0515 (7)
C90.1498 (2)−0.1287 (4)0.1924 (2)0.0552 (8)
H9A0.1105−0.04110.15090.066*
H9B0.1735−0.19500.14060.066*
C100.2408 (3)−0.0717 (4)0.2892 (3)0.0537 (8)
H10A0.3021−0.13650.29680.064*
H10B0.25790.03700.27820.064*
N110.20128 (18)−0.0880 (3)0.3875 (2)0.0475 (6)
C120.1124 (2)−0.1855 (3)0.3619 (2)0.0471 (7)
C130.2523 (3)−0.0357 (4)0.4938 (3)0.0538 (8)
O140.34333 (19)0.0302 (3)0.4922 (2)0.0733 (7)
C150.4057 (3)0.0951 (5)0.5990 (4)0.0937 (14)
H15A0.36060.14500.63790.112*
H15B0.45270.17420.58500.112*
C160.4668 (3)−0.0327 (6)0.6709 (4)0.1119 (17)
H16A0.4200−0.10550.69060.168*
H16B0.51220.01200.73860.168*
H16C0.5075−0.08690.62990.168*
U11U22U33U12U13U23
Cl10.0669 (7)0.1178 (9)0.0857 (9)0.0107 (6)−0.0010 (6)0.0055 (6)
O10.0580 (15)0.0992 (17)0.0429 (13)−0.0119 (13)0.0197 (11)0.0150 (12)
O20.0746 (17)0.1006 (17)0.0353 (13)−0.0080 (13)0.0204 (12)−0.0088 (12)
N10.0613 (19)0.094 (2)0.0381 (16)−0.0072 (16)0.0124 (14)0.0020 (14)
C20.065 (2)0.088 (2)0.0290 (17)−0.0102 (19)0.0121 (15)−0.0066 (16)
C30.0470 (18)0.0610 (18)0.0385 (17)−0.0136 (15)0.0122 (14)−0.0050 (14)
C40.062 (2)0.081 (2)0.0403 (19)−0.0085 (19)0.0225 (17)−0.0091 (17)
C50.057 (2)0.089 (2)0.045 (2)−0.0033 (18)0.0180 (16)−0.0080 (18)
C60.0461 (19)0.075 (2)0.051 (2)−0.0093 (16)0.0088 (16)−0.0010 (17)
C70.062 (2)0.063 (2)0.050 (2)−0.0107 (17)0.0131 (17)−0.0077 (16)
N80.0525 (16)0.0653 (16)0.0366 (15)−0.0100 (13)0.0122 (12)−0.0006 (12)
C90.059 (2)0.076 (2)0.0357 (18)−0.0088 (16)0.0213 (15)−0.0047 (15)
C100.0527 (19)0.076 (2)0.0366 (17)−0.0077 (16)0.0200 (14)−0.0029 (15)
N110.0430 (14)0.0696 (16)0.0304 (14)−0.0031 (12)0.0115 (11)0.0012 (11)
C120.0425 (17)0.0619 (19)0.0367 (17)0.0062 (14)0.0113 (14)0.0110 (14)
C130.054 (2)0.071 (2)0.0355 (18)−0.0015 (17)0.0117 (15)0.0011 (16)
O140.0653 (16)0.1055 (19)0.0469 (15)−0.0273 (14)0.0124 (12)−0.0147 (13)
C150.085 (3)0.130 (4)0.058 (3)−0.035 (3)0.006 (2)−0.020 (3)
C160.073 (3)0.174 (5)0.075 (3)−0.019 (3)0.000 (3)−0.024 (3)
Cl1—C61.743 (3)N8—C91.443 (3)
O1—C121.209 (3)C9—C101.522 (4)
O2—C131.198 (3)C9—H9A0.9700
N1—C61.315 (4)C9—H9B0.9700
N1—C41.333 (4)C10—N111.462 (3)
C2—C51.364 (5)C10—H10A0.9700
C2—C31.387 (4)C10—H10B0.9700
C2—H20.9300N11—C131.368 (4)
C3—C41.375 (4)N11—C121.411 (4)
C3—C71.512 (4)C13—O141.347 (4)
C4—H40.9300O14—C151.452 (4)
C5—C61.371 (5)C15—C161.491 (5)
C5—H50.9300C15—H15A0.9700
C7—N81.451 (4)C15—H15B0.9700
C7—H7A0.9700C16—H16A0.9600
C7—H7B0.9700C16—H16B0.9600
N8—C121.343 (4)C16—H16C0.9600
C6—N1—C4115.8 (3)H9A—C9—H9B109.2
C5—C2—C3120.1 (3)N11—C10—C9102.9 (2)
C5—C2—H2119.9N11—C10—H10A111.2
C3—C2—H2119.9C9—C10—H10A111.2
C4—C3—C2116.4 (3)N11—C10—H10B111.2
C4—C3—C7121.5 (3)C9—C10—H10B111.2
C2—C3—C7122.1 (3)H10A—C10—H10B109.1
N1—C4—C3125.0 (3)C13—N11—C12124.4 (2)
N1—C4—H4117.5C13—N11—C10124.3 (2)
C3—C4—H4117.5C12—N11—C10110.6 (2)
C2—C5—C6117.6 (3)O1—C12—N8127.2 (3)
C2—C5—H5121.2O1—C12—N11126.4 (3)
C6—C5—H5121.2N8—C12—N11106.4 (2)
N1—C6—C5125.0 (3)O2—C13—O14124.8 (3)
N1—C6—Cl1116.1 (3)O2—C13—N11126.0 (3)
C5—C6—Cl1118.9 (3)O14—C13—N11109.2 (3)
N8—C7—C3113.2 (2)C13—O14—C15115.8 (3)
N8—C7—H7A108.9O14—C15—C16109.9 (3)
C3—C7—H7A108.9O14—C15—H15A109.7
N8—C7—H7B108.9C16—C15—H15A109.7
C3—C7—H7B108.9O14—C15—H15B109.7
H7A—C7—H7B107.7C16—C15—H15B109.7
C12—N8—C9113.9 (2)H15A—C15—H15B108.2
C12—N8—C7122.2 (2)C15—C16—H16A109.5
C9—N8—C7123.0 (3)C15—C16—H16B109.5
N8—C9—C10102.3 (2)H16A—C16—H16B109.5
N8—C9—H9A111.3C15—C16—H16C109.5
C10—C9—H9A111.3H16A—C16—H16C109.5
N8—C9—H9B111.3H16B—C16—H16C109.5
C10—C9—H9B111.3
C5—C2—C3—C4−0.1 (5)C9—C10—N11—C13−173.1 (3)
C5—C2—C3—C7179.1 (3)C9—C10—N11—C1216.0 (3)
C6—N1—C4—C30.8 (5)C9—N8—C12—O1173.2 (3)
C2—C3—C4—N1−0.6 (5)C7—N8—C12—O14.0 (5)
C7—C3—C4—N1−179.8 (3)C9—N8—C12—N11−7.7 (3)
C3—C2—C5—C60.4 (5)C7—N8—C12—N11−177.0 (2)
C4—N1—C6—C5−0.5 (5)C13—N11—C12—O12.1 (5)
C4—N1—C6—Cl1178.4 (2)C10—N11—C12—O1173.0 (3)
C2—C5—C6—N1−0.1 (5)C13—N11—C12—N8−177.0 (3)
C2—C5—C6—Cl1−179.0 (2)C10—N11—C12—N8−6.1 (3)
C4—C3—C7—N8106.3 (3)C12—N11—C13—O2−12.3 (5)
C2—C3—C7—N8−72.9 (4)C10—N11—C13—O2178.0 (3)
C3—C7—N8—C1291.0 (3)C12—N11—C13—O14169.1 (3)
C3—C7—N8—C9−77.3 (4)C10—N11—C13—O14−0.6 (4)
C12—N8—C9—C1017.3 (3)O2—C13—O14—C15−0.1 (5)
C7—N8—C9—C10−173.5 (3)N11—C13—O14—C15178.6 (3)
N8—C9—C10—N11−18.9 (3)C13—O14—C15—C1682.3 (4)
D—H···AD—HH···AD···AD—H···A
C4—H4···O1i0.932.533.366 (5)150
C9—H9B···O2i0.972.503.395 (4)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O1i0.932.533.366 (5)150
C9—H9B⋯O2i0.972.503.395 (4)152

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Insecticidal and neuroblocking potencies of variants of the imidazolidine moiety of imidacloprid-related neonicotinoids and the relationship to partition coefficient and charge density on the pharmacophore.

Authors:  Shinzo Kagabu; Rika Ishihara; Yosuke Hieda; Keiichiro Nishimura; Yuji Naruse
Journal:  J Agric Food Chem       Date:  2007-02-07       Impact factor: 5.279

3.  Dihydropiperazine neonicotinoid compounds. Synthesis and insecticidal activity.

Authors:  Jack G Samaritoni; David A Demeter; James M Gifford; Gerald B Watson; Margaret S Kempe; Timothy J Bruce
Journal:  J Agric Food Chem       Date:  2003-05-07       Impact factor: 5.279

4.  1-[(6-Chloro-pyridin-3-yl)meth-yl]imidazolidin-2-iminium chloride.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Madhukar B Deshmukh; Chetan S Shripanavar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  1-[(6-Chloro-pyridin-3-yl)meth-yl]-imidazolidin-2-one.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Chetan S Shripanavar; Kaushik Banerjee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

2.  Poly[μ₂-aqua-μ₄-(2-{3-[(6-chloro-pyridin-3-yl)meth-yl]-2-oxoimidazolidin-1-yl}acetato)-sodium].

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Chetan S Shripanavar; Kaushik Banerjee; Madhukar B Deshmukh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

3.  Ethyl 2-{3-[(6-chloro-pyridin-3-yl)meth-yl]-2-(nitro-imino)-imidazolidin-1-yl}acetate.

Authors:  Kamini Kapoor; Madhukar B Deshmukh; Chetan S Shripanavar; Vivek K Gupta; Rajni Kant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07
  3 in total

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