Literature DB >> 22347062

2-(4-Bromo-1H-indol-3-yl)acetonitrile.

Qiu-Xia Mao1, Chen-Guang Zhang, Jin-Feng Li.   

Abstract

In the title compound, C(10)H(7)BrN(2), the non-H atoms, except the N atom of the acetonitrile group and the C atom bonded to it, lie in the least-squares plane defined by the atoms of the indole ring system (r.m.s deviation = 0.019 Å), with the N and C atom of the cyano group displaced by 2.278 (1) and 1.289 (1) Å, respectively, out of that plane. In the crystal, N-H⋯N hydrogen bonds link the mol-ecules into a C(7) chain along [100].

Entities:  

Year:  2012        PMID: 22347062      PMCID: PMC3275206          DOI: 10.1107/S1600536811054936

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For natural products with a bromo indole moiety, see: Walker et al. (2009 ▶). For the use of 4-bromo indole derivatives in the synthesis of biologically active compounds, see: Hendrickson & Wang (2004 ▶); Giraud et al. (2011 ▶). For the structures of related halo indoles, see: Kunzer & Wendt (2011 ▶).

Experimental

Crystal data

C10H7BrN2 M = 235.09 Monoclinic, a = 8.3971 (17) Å b = 11.237 (2) Å c = 9.979 (2) Å β = 104.82 (3)° V = 910.2 (3) Å3 Z = 4 Mo Kα radiation μ = 4.46 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.983, T max = 0.983 9047 measured reflections 2082 independent reflections 1489 reflections with I > 2σ(I) R int = 0.115

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.188 S = 1.09 2082 reflections 118 parameters H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −1.84 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054936/lr2041sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054936/lr2041Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054936/lr2041Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7BrN2F(000) = 464
Mr = 235.09Dx = 1.715 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2082 reflections
a = 8.3971 (17) Åθ = 3.1–27.5°
b = 11.237 (2) ŵ = 4.46 mm1
c = 9.979 (2) ÅT = 293 K
β = 104.82 (3)°Prism, colourless
V = 910.2 (3) Å30.20 × 0.20 × 0.20 mm
Z = 4
Rigaku SCXmini diffractometer2082 independent reflections
Radiation source: fine-focus sealed tube1489 reflections with I > 2σ(I)
graphiteRint = 0.115
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
CCD_Profile_fitting scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −14→14
Tmin = 0.983, Tmax = 0.983l = −12→12
9047 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0915P)2] where P = (Fo2 + 2Fc2)/3
2082 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −1.84 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.72608 (9)1.02919 (6)0.23625 (7)0.0565 (3)
C100.9402 (7)0.9743 (4)0.2351 (5)0.0344 (12)
N11.1261 (6)0.7932 (4)0.0298 (5)0.0433 (11)
H1A1.21090.76000.01240.052*
C50.9637 (6)0.8989 (4)0.1306 (5)0.0285 (10)
C20.8646 (6)0.8483 (4)0.0068 (5)0.0341 (11)
C91.0709 (8)1.0096 (4)0.3397 (6)0.0447 (14)
H9A1.05311.06230.40630.054*
C61.1290 (6)0.8616 (4)0.1422 (5)0.0333 (11)
C81.2297 (8)0.9690 (5)0.3493 (7)0.0520 (15)
H8A1.31580.99240.42340.062*
C10.9703 (8)0.7850 (5)−0.0511 (6)0.0410 (13)
H1B0.93930.7426−0.13380.049*
C30.6815 (6)0.8582 (5)−0.0559 (5)0.0439 (13)
H3A0.64890.9410−0.05470.053*
H3B0.65650.8326−0.15190.053*
C40.5863 (7)0.7872 (5)0.0176 (6)0.0444 (13)
N20.5110 (7)0.7337 (5)0.0738 (6)0.0608 (14)
C71.2599 (7)0.8940 (6)0.2491 (5)0.0490 (15)
H7A1.36560.86640.25400.059*
U11U22U33U12U13U23
Br10.0551 (5)0.0581 (5)0.0607 (5)0.0174 (3)0.0226 (4)−0.0069 (3)
C100.038 (3)0.033 (3)0.035 (3)0.004 (2)0.014 (2)0.007 (2)
N10.047 (3)0.040 (2)0.052 (3)0.008 (2)0.029 (3)0.0010 (19)
C50.033 (3)0.024 (2)0.031 (2)0.0024 (17)0.010 (2)0.0062 (17)
C20.039 (3)0.034 (3)0.029 (2)−0.006 (2)0.008 (2)0.0037 (19)
C90.062 (4)0.035 (3)0.038 (3)−0.005 (2)0.014 (3)−0.004 (2)
C60.033 (3)0.034 (3)0.036 (3)0.003 (2)0.015 (2)0.011 (2)
C80.044 (4)0.061 (4)0.043 (3)−0.012 (3)−0.004 (3)0.007 (3)
C10.060 (4)0.036 (3)0.032 (3)−0.005 (2)0.020 (3)−0.002 (2)
C30.045 (3)0.052 (3)0.031 (3)−0.009 (3)0.002 (2)0.004 (2)
C40.035 (3)0.050 (3)0.046 (3)−0.001 (2)0.007 (3)0.001 (2)
N20.045 (3)0.070 (4)0.069 (4)−0.009 (3)0.017 (3)0.004 (3)
C70.039 (3)0.051 (4)0.055 (4)0.000 (2)0.008 (3)0.013 (3)
Br1—C101.904 (5)C9—H9A0.9300
C10—C91.365 (8)C6—C71.371 (7)
C10—C51.397 (6)C8—C71.379 (9)
N1—C61.355 (6)C8—H8A0.9300
N1—C11.353 (8)C1—H1B0.9300
N1—H1A0.8600C3—C41.454 (7)
C5—C21.420 (7)C3—H3A0.9700
C5—C61.425 (6)C3—H3B0.9700
C2—C11.374 (7)C4—N21.121 (7)
C2—C31.509 (7)C7—H7A0.9300
C9—C81.389 (9)
C9—C10—C5120.5 (5)C7—C6—C5123.7 (5)
C9—C10—Br1118.5 (4)C7—C8—C9120.1 (6)
C5—C10—Br1121.0 (4)C7—C8—H8A119.9
C6—N1—C1110.0 (4)C9—C8—H8A119.9
C6—N1—H1A125.0C2—C1—N1110.1 (5)
C1—N1—H1A125.0C2—C1—H1B125.0
C10—C5—C2136.8 (5)N1—C1—H1B125.0
C10—C5—C6116.0 (5)C4—C3—C2112.6 (4)
C2—C5—C6107.1 (4)C4—C3—H3A109.1
C1—C2—C5106.0 (4)C2—C3—H3A109.1
C1—C2—C3124.3 (5)C4—C3—H3B109.1
C5—C2—C3129.7 (4)C2—C3—H3B109.1
C10—C9—C8121.8 (5)H3A—C3—H3B107.8
C10—C9—H9A119.1N2—C4—C3178.9 (6)
C8—C9—H9A119.1C6—C7—C8117.8 (5)
N1—C6—C7129.5 (5)C6—C7—H7A121.1
N1—C6—C5106.8 (5)C8—C7—H7A121.1
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.862.453.218 (7)148.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N2i0.862.453.218 (7)148

Symmetry code: (i) .

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