Literature DB >> 22347053

(Z)-2-[(4-Methyl-phen-yl)sulfon-yl]-1,2-diphenyl-ethene-selenol.

Sampath Natarajan1, Rita Mathews.   

Abstract

In the title compound, C(21)H(18)O(2)SSe, the dihedral angle between the cis phenyl rings is 64.3 (1)° and those between the toluene and the phenyl rings are 21.1 (2) and 72.0 (1)°, respectively. An intra-molecular Se-H⋯O hydrogen bond occurs. In the crystal, mol-ecules are connected by C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions help to consolidate the crystal packing.

Entities:  

Year:  2012        PMID: 22347053      PMCID: PMC3275197          DOI: 10.1107/S1600536812001638

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For industrial applications of selenium, see: Stevenson (2011 ▶); Comasseto et al. (1997 ▶). For its biological function, see: Gladyshev et al. (1996 ▶); Epp et al. (1983 ▶); Wessjohann et al. (2007 ▶).

Experimental

Crystal data

C21H18O2SSe M = 413.37 Monoclinic, a = 21.601 (3) Å b = 8.5238 (12) Å c = 21.187 (3) Å β = 106.175 (4)° V = 3746.5 (9) Å3 Z = 8 Mo Kα radiation μ = 2.13 mm−1 T = 293 K 0.32 × 0.20 × 0.16 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 20922 measured reflections 4449 independent reflections 3330 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.114 S = 1.01 4449 reflections 226 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812001638/bq2332sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812001638/bq2332Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812001638/bq2332Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H18O2SSeF(000) = 1680
Mr = 413.37Dx = 1.466 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4449 reflections
a = 21.601 (3) Åθ = 2.0–28.4°
b = 8.5238 (12) ŵ = 2.13 mm1
c = 21.187 (3) ÅT = 293 K
β = 106.175 (4)°Needle, colorless
V = 3746.5 (9) Å30.32 × 0.20 × 0.16 mm
Z = 8
Bruker SMART APEX CCD area-detector diffractometer3330 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 28.4°, θmin = 2.0°
ω scansh = −28→27
20922 measured reflectionsk = −11→11
4449 independent reflectionsl = −26→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0722P)2 + 0.6895P] where P = (Fo2 + 2Fc2)/3
4449 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.65 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Se10.158447 (15)0.71437 (4)0.075900 (13)0.06873 (13)
H1A0.16210.68890.11410.103*
S10.12700 (3)0.35507 (8)0.12702 (3)0.05289 (17)
O10.10403 (10)0.1978 (3)0.12827 (9)0.0747 (6)
O20.09829 (8)0.4776 (3)0.15593 (8)0.0696 (5)
C10.11840 (10)0.3982 (3)0.04198 (10)0.0450 (5)
C20.09960 (12)0.2622 (3)−0.00303 (11)0.0492 (5)
C30.03661 (15)0.2087 (3)−0.02158 (14)0.0642 (7)
H30.00580.2576−0.00530.077*
C40.0192 (2)0.0830 (4)−0.06412 (15)0.0872 (11)
H4−0.02330.0486−0.07710.105*
C50.0654 (3)0.0093 (4)−0.08708 (17)0.1021 (13)
H50.0541−0.0761−0.11530.123*
C60.1279 (2)0.0611 (4)−0.06857 (18)0.0959 (12)
H60.15900.0110−0.08420.115*
C70.14454 (17)0.1860 (3)−0.02735 (15)0.0698 (7)
H70.18700.2207−0.01530.084*
C80.12986 (10)0.5387 (3)0.01975 (10)0.0450 (5)
C90.12153 (10)0.5774 (3)−0.05031 (10)0.0438 (5)
C100.06198 (11)0.5576 (3)−0.09579 (11)0.0503 (5)
H100.02740.5190−0.08240.060*
C110.05388 (12)0.5951 (3)−0.16109 (11)0.0587 (6)
H110.01390.5809−0.19140.070*
C120.10403 (14)0.6527 (3)−0.18150 (12)0.0622 (6)
H120.09810.6783−0.22550.075*
C130.16341 (14)0.6730 (3)−0.13693 (13)0.0619 (6)
H130.19760.7119−0.15090.074*
C140.17247 (11)0.6355 (3)−0.07140 (12)0.0533 (6)
H140.21270.6493−0.04150.064*
C150.21090 (10)0.3538 (3)0.16456 (10)0.0463 (5)
C160.23804 (12)0.4644 (3)0.21091 (12)0.0612 (6)
H160.21280.54270.22170.073*
C170.30360 (13)0.4579 (4)0.24136 (13)0.0683 (7)
H170.32210.53170.27340.082*
C180.34198 (12)0.3450 (4)0.22527 (12)0.0597 (6)
C190.31359 (14)0.2362 (3)0.17798 (15)0.0641 (7)
H190.33910.15990.16620.077*
C200.24825 (13)0.2378 (3)0.14778 (13)0.0561 (6)
H200.22960.16220.11660.067*
C210.41369 (15)0.3404 (5)0.25779 (18)0.0914 (10)
H21A0.43240.25440.24040.137*
H21B0.42140.32700.30430.137*
H21C0.43280.43700.24940.137*
U11U22U33U12U13U23
Se10.0826 (2)0.0716 (2)0.04728 (17)−0.02695 (14)0.01026 (14)−0.01444 (11)
S10.0415 (3)0.0792 (4)0.0358 (3)−0.0115 (3)0.0071 (2)0.0064 (3)
O10.0680 (12)0.0960 (16)0.0515 (10)−0.0343 (10)0.0026 (9)0.0196 (9)
O20.0500 (9)0.1144 (16)0.0488 (9)0.0079 (10)0.0210 (8)0.0008 (10)
C10.0353 (10)0.0628 (13)0.0346 (10)−0.0058 (9)0.0061 (8)0.0020 (9)
C20.0570 (13)0.0507 (12)0.0383 (11)−0.0034 (10)0.0107 (10)0.0070 (9)
C30.0683 (16)0.0668 (17)0.0528 (15)−0.0167 (13)0.0087 (13)−0.0056 (12)
C40.117 (3)0.074 (2)0.0586 (17)−0.041 (2)0.0050 (18)−0.0043 (15)
C50.194 (5)0.0526 (17)0.0610 (18)−0.025 (2)0.037 (2)−0.0074 (14)
C60.159 (4)0.061 (2)0.083 (2)0.014 (2)0.060 (3)0.0005 (17)
C70.0821 (19)0.0677 (18)0.0652 (17)0.0075 (14)0.0297 (15)0.0082 (13)
C80.0368 (10)0.0551 (13)0.0391 (10)−0.0070 (9)0.0040 (8)−0.0043 (9)
C90.0458 (11)0.0452 (11)0.0380 (10)−0.0038 (9)0.0079 (9)−0.0012 (9)
C100.0426 (11)0.0632 (14)0.0420 (11)−0.0011 (10)0.0067 (9)0.0020 (10)
C110.0521 (13)0.0794 (17)0.0389 (12)0.0064 (12)0.0032 (10)−0.0006 (11)
C120.0751 (17)0.0743 (17)0.0377 (12)0.0038 (14)0.0167 (12)0.0014 (11)
C130.0653 (15)0.0708 (16)0.0548 (14)−0.0113 (13)0.0253 (12)−0.0009 (12)
C140.0496 (12)0.0612 (15)0.0460 (12)−0.0124 (11)0.0082 (10)−0.0036 (10)
C150.0418 (11)0.0613 (13)0.0324 (10)−0.0050 (10)0.0044 (8)0.0025 (9)
C160.0545 (14)0.0766 (17)0.0467 (13)0.0072 (12)0.0045 (11)−0.0137 (12)
C170.0558 (14)0.0840 (19)0.0525 (14)−0.0063 (14)−0.0059 (11)−0.0184 (13)
C180.0450 (12)0.0784 (17)0.0503 (13)−0.0020 (12)0.0044 (10)0.0105 (13)
C190.0594 (15)0.0687 (16)0.0628 (17)0.0113 (13)0.0143 (13)0.0015 (13)
C200.0597 (15)0.0565 (14)0.0471 (13)−0.0021 (11)0.0065 (11)−0.0025 (10)
C210.0499 (15)0.124 (3)0.089 (2)0.0031 (17)0.0002 (15)0.009 (2)
Se1—C81.905 (2)C10—H100.9300
Se1—H1A0.8200C11—C121.365 (4)
S1—O11.432 (2)C11—H110.9300
S1—O21.436 (2)C12—C131.375 (4)
S1—C151.765 (2)C12—H120.9300
S1—C11.797 (2)C13—C141.384 (4)
C1—C81.335 (3)C13—H130.9300
C1—C21.484 (3)C14—H140.9300
C2—C71.382 (4)C15—C161.370 (3)
C2—C31.384 (4)C15—C201.384 (4)
C3—C41.383 (4)C16—C171.384 (4)
C3—H30.9300C16—H160.9300
C4—C51.378 (6)C17—C181.374 (4)
C4—H40.9300C17—H170.9300
C5—C61.370 (6)C18—C191.378 (4)
C5—H50.9300C18—C211.510 (4)
C6—C71.360 (5)C19—C201.378 (4)
C6—H60.9300C19—H190.9300
C7—H70.9300C20—H200.9300
C8—C91.482 (3)C21—H21A0.9600
C9—C101.386 (3)C21—H21B0.9600
C9—C141.389 (3)C21—H21C0.9600
C10—C111.383 (3)
C8—Se1—H1A109.5C12—C11—C10120.6 (2)
O1—S1—O2118.66 (13)C12—C11—H11119.7
O1—S1—C15107.67 (12)C10—C11—H11119.7
O2—S1—C15108.88 (11)C11—C12—C13119.9 (2)
O1—S1—C1105.69 (11)C11—C12—H12120.1
O2—S1—C1110.04 (11)C13—C12—H12120.1
C15—S1—C1105.04 (10)C12—C13—C14120.3 (2)
C8—C1—C2121.23 (19)C12—C13—H13119.9
C8—C1—S1124.04 (17)C14—C13—H13119.9
C2—C1—S1114.69 (16)C13—C14—C9120.1 (2)
C7—C2—C3118.4 (3)C13—C14—H14119.9
C7—C2—C1120.8 (2)C9—C14—H14119.9
C3—C2—C1120.8 (2)C16—C15—C20120.8 (2)
C4—C3—C2120.5 (3)C16—C15—S1119.97 (19)
C4—C3—H3119.7C20—C15—S1119.19 (18)
C2—C3—H3119.7C15—C16—C17119.0 (2)
C5—C4—C3119.4 (3)C15—C16—H16120.5
C5—C4—H4120.3C17—C16—H16120.5
C3—C4—H4120.3C18—C17—C16121.5 (2)
C6—C5—C4120.3 (3)C18—C17—H17119.3
C6—C5—H5119.8C16—C17—H17119.3
C4—C5—H5119.8C17—C18—C19118.4 (2)
C7—C6—C5119.9 (4)C17—C18—C21121.2 (3)
C7—C6—H6120.0C19—C18—C21120.4 (3)
C5—C6—H6120.0C18—C19—C20121.4 (3)
C6—C7—C2121.4 (3)C18—C19—H19119.3
C6—C7—H7119.3C20—C19—H19119.3
C2—C7—H7119.3C19—C20—C15118.9 (2)
C1—C8—C9124.8 (2)C19—C20—H20120.6
C1—C8—Se1122.99 (16)C15—C20—H20120.6
C9—C8—Se1112.23 (16)C18—C21—H21A109.5
C10—C9—C14119.0 (2)C18—C21—H21B109.5
C10—C9—C8119.96 (19)H21A—C21—H21B109.5
C14—C9—C8121.05 (19)C18—C21—H21C109.5
C11—C10—C9120.1 (2)H21A—C21—H21C109.5
C11—C10—H10119.9H21B—C21—H21C109.5
C9—C10—H10119.9
O1—S1—C1—C8174.4 (2)Se1—C8—C9—C1457.8 (3)
O2—S1—C1—C845.2 (2)C14—C9—C10—C110.1 (4)
C15—S1—C1—C8−71.9 (2)C8—C9—C10—C11179.3 (2)
O1—S1—C1—C2−7.9 (2)C9—C10—C11—C12−0.4 (4)
O2—S1—C1—C2−137.13 (17)C10—C11—C12—C130.4 (4)
C15—S1—C1—C2105.83 (18)C11—C12—C13—C14−0.2 (4)
C8—C1—C2—C774.7 (3)C12—C13—C14—C9−0.1 (4)
S1—C1—C2—C7−103.1 (2)C10—C9—C14—C130.1 (4)
C8—C1—C2—C3−105.4 (3)C8—C9—C14—C13−179.1 (2)
S1—C1—C2—C376.9 (3)O1—S1—C15—C16−132.8 (2)
C7—C2—C3—C4−0.8 (4)O2—S1—C15—C16−2.9 (2)
C1—C2—C3—C4179.3 (2)C1—S1—C15—C16114.9 (2)
C2—C3—C4—C51.2 (5)O1—S1—C15—C2045.6 (2)
C3—C4—C5—C6−0.8 (5)O2—S1—C15—C20175.43 (19)
C4—C5—C6—C70.0 (5)C1—S1—C15—C20−66.7 (2)
C5—C6—C7—C20.4 (5)C20—C15—C16—C17−0.6 (4)
C3—C2—C7—C60.0 (4)S1—C15—C16—C17177.8 (2)
C1—C2—C7—C6179.9 (3)C15—C16—C17—C181.2 (4)
C2—C1—C8—C94.0 (3)C16—C17—C18—C19−0.5 (4)
S1—C1—C8—C9−178.47 (17)C16—C17—C18—C21178.8 (3)
C2—C1—C8—Se1−176.64 (16)C17—C18—C19—C20−0.9 (4)
S1—C1—C8—Se10.9 (3)C21—C18—C19—C20179.8 (3)
C1—C8—C9—C1058.1 (3)C18—C19—C20—C151.5 (4)
Se1—C8—C9—C10−121.4 (2)C16—C15—C20—C19−0.7 (4)
C1—C8—C9—C14−122.7 (3)S1—C15—C20—C19−179.1 (2)
Cg1 is the centroid of the C9–C14 ring.
D—H···AD—HH···AD···AD—H···A
Se1—H1A···O20.822.573.141 (2)128
C4—H4···O1i0.932.753.557 (4)145
C17—H17···O1ii0.932.653.567 (3)168
C5—H5···Cg1iii0.932.923.615132
C19—H19···Cg1iv0.932.883.791165
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C9–C14 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
Se1—H1A⋯O20.822.573.141 (2)128
C4—H4⋯O1i0.932.753.557 (4)145
C17—H17⋯O1ii0.932.653.567 (3)168
C5—H5⋯Cg1iii0.932.923.615132
C19—H19⋯Cg1iv0.932.883.791165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  Selenocysteine, identified as the penultimate C-terminal residue in human T-cell thioredoxin reductase, corresponds to TGA in the human placental gene.

Authors:  V N Gladyshev; K T Jeang; T C Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The refined structure of the selenoenzyme glutathione peroxidase at 0.2-nm resolution.

Authors:  O Epp; R Ladenstein; A Wendel
Journal:  Eur J Biochem       Date:  1983-06-01

Review 4.  Selenium in chemistry and biochemistry in comparison to sulfur.

Authors:  Ludger A Wessjohann; Alex Schneider; Muhammad Abbas; Wolfgang Brandt
Journal:  Biol Chem       Date:  2007-10       Impact factor: 3.915

Review 5.  Selenol protecting groups in organic chemistry: special emphasis on selenocysteine Se-protection in solid phase peptide synthesis.

Authors:  Stevenson Flemer
Journal:  Molecules       Date:  2011-04-18       Impact factor: 4.411

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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