| Literature DB >> 22347053 |
Sampath Natarajan1, Rita Mathews.
Abstract
In the title compound, C(21)H(18)O(2)SSe, the dihedral angle between the cis phenyl rings is 64.3 (1)° and those between the toluene and the phenyl rings are 21.1 (2) and 72.0 (1)°, respectively. An intra-molecular Se-H⋯O hydrogen bond occurs. In the crystal, mol-ecules are connected by C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions help to consolidate the crystal packing.Entities:
Year: 2012 PMID: 22347053 PMCID: PMC3275197 DOI: 10.1107/S1600536812001638
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H18O2SSe | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 4449 reflections |
| θ = 2.0–28.4° | |
| µ = 2.13 mm−1 | |
| β = 106.175 (4)° | Needle, colorless |
| 0.32 × 0.20 × 0.16 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 3330 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.4°, θmin = 2.0° |
| ω scans | |
| 20922 measured reflections | |
| 4449 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4449 reflections | (Δ/σ)max < 0.001 |
| 226 parameters | Δρmax = 0.65 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.158447 (15) | 0.71437 (4) | 0.075900 (13) | 0.06873 (13) | |
| H1A | 0.1621 | 0.6889 | 0.1141 | 0.103* | |
| S1 | 0.12700 (3) | 0.35507 (8) | 0.12702 (3) | 0.05289 (17) | |
| O1 | 0.10403 (10) | 0.1978 (3) | 0.12827 (9) | 0.0747 (6) | |
| O2 | 0.09829 (8) | 0.4776 (3) | 0.15593 (8) | 0.0696 (5) | |
| C1 | 0.11840 (10) | 0.3982 (3) | 0.04198 (10) | 0.0450 (5) | |
| C2 | 0.09960 (12) | 0.2622 (3) | −0.00303 (11) | 0.0492 (5) | |
| C3 | 0.03661 (15) | 0.2087 (3) | −0.02158 (14) | 0.0642 (7) | |
| H3 | 0.0058 | 0.2576 | −0.0053 | 0.077* | |
| C4 | 0.0192 (2) | 0.0830 (4) | −0.06412 (15) | 0.0872 (11) | |
| H4 | −0.0233 | 0.0486 | −0.0771 | 0.105* | |
| C5 | 0.0654 (3) | 0.0093 (4) | −0.08708 (17) | 0.1021 (13) | |
| H5 | 0.0541 | −0.0761 | −0.1153 | 0.123* | |
| C6 | 0.1279 (2) | 0.0611 (4) | −0.06857 (18) | 0.0959 (12) | |
| H6 | 0.1590 | 0.0110 | −0.0842 | 0.115* | |
| C7 | 0.14454 (17) | 0.1860 (3) | −0.02735 (15) | 0.0698 (7) | |
| H7 | 0.1870 | 0.2207 | −0.0153 | 0.084* | |
| C8 | 0.12986 (10) | 0.5387 (3) | 0.01975 (10) | 0.0450 (5) | |
| C9 | 0.12153 (10) | 0.5774 (3) | −0.05031 (10) | 0.0438 (5) | |
| C10 | 0.06198 (11) | 0.5576 (3) | −0.09579 (11) | 0.0503 (5) | |
| H10 | 0.0274 | 0.5190 | −0.0824 | 0.060* | |
| C11 | 0.05388 (12) | 0.5951 (3) | −0.16109 (11) | 0.0587 (6) | |
| H11 | 0.0139 | 0.5809 | −0.1914 | 0.070* | |
| C12 | 0.10403 (14) | 0.6527 (3) | −0.18150 (12) | 0.0622 (6) | |
| H12 | 0.0981 | 0.6783 | −0.2255 | 0.075* | |
| C13 | 0.16341 (14) | 0.6730 (3) | −0.13693 (13) | 0.0619 (6) | |
| H13 | 0.1976 | 0.7119 | −0.1509 | 0.074* | |
| C14 | 0.17247 (11) | 0.6355 (3) | −0.07140 (12) | 0.0533 (6) | |
| H14 | 0.2127 | 0.6493 | −0.0415 | 0.064* | |
| C15 | 0.21090 (10) | 0.3538 (3) | 0.16456 (10) | 0.0463 (5) | |
| C16 | 0.23804 (12) | 0.4644 (3) | 0.21091 (12) | 0.0612 (6) | |
| H16 | 0.2128 | 0.5427 | 0.2217 | 0.073* | |
| C17 | 0.30360 (13) | 0.4579 (4) | 0.24136 (13) | 0.0683 (7) | |
| H17 | 0.3221 | 0.5317 | 0.2734 | 0.082* | |
| C18 | 0.34198 (12) | 0.3450 (4) | 0.22527 (12) | 0.0597 (6) | |
| C19 | 0.31359 (14) | 0.2362 (3) | 0.17798 (15) | 0.0641 (7) | |
| H19 | 0.3391 | 0.1599 | 0.1662 | 0.077* | |
| C20 | 0.24825 (13) | 0.2378 (3) | 0.14778 (13) | 0.0561 (6) | |
| H20 | 0.2296 | 0.1622 | 0.1166 | 0.067* | |
| C21 | 0.41369 (15) | 0.3404 (5) | 0.25779 (18) | 0.0914 (10) | |
| H21A | 0.4324 | 0.2544 | 0.2404 | 0.137* | |
| H21B | 0.4214 | 0.3270 | 0.3043 | 0.137* | |
| H21C | 0.4328 | 0.4370 | 0.2494 | 0.137* |
| Se1 | 0.0826 (2) | 0.0716 (2) | 0.04728 (17) | −0.02695 (14) | 0.01026 (14) | −0.01444 (11) |
| S1 | 0.0415 (3) | 0.0792 (4) | 0.0358 (3) | −0.0115 (3) | 0.0071 (2) | 0.0064 (3) |
| O1 | 0.0680 (12) | 0.0960 (16) | 0.0515 (10) | −0.0343 (10) | 0.0026 (9) | 0.0196 (9) |
| O2 | 0.0500 (9) | 0.1144 (16) | 0.0488 (9) | 0.0079 (10) | 0.0210 (8) | 0.0008 (10) |
| C1 | 0.0353 (10) | 0.0628 (13) | 0.0346 (10) | −0.0058 (9) | 0.0061 (8) | 0.0020 (9) |
| C2 | 0.0570 (13) | 0.0507 (12) | 0.0383 (11) | −0.0034 (10) | 0.0107 (10) | 0.0070 (9) |
| C3 | 0.0683 (16) | 0.0668 (17) | 0.0528 (15) | −0.0167 (13) | 0.0087 (13) | −0.0056 (12) |
| C4 | 0.117 (3) | 0.074 (2) | 0.0586 (17) | −0.041 (2) | 0.0050 (18) | −0.0043 (15) |
| C5 | 0.194 (5) | 0.0526 (17) | 0.0610 (18) | −0.025 (2) | 0.037 (2) | −0.0074 (14) |
| C6 | 0.159 (4) | 0.061 (2) | 0.083 (2) | 0.014 (2) | 0.060 (3) | 0.0005 (17) |
| C7 | 0.0821 (19) | 0.0677 (18) | 0.0652 (17) | 0.0075 (14) | 0.0297 (15) | 0.0082 (13) |
| C8 | 0.0368 (10) | 0.0551 (13) | 0.0391 (10) | −0.0070 (9) | 0.0040 (8) | −0.0043 (9) |
| C9 | 0.0458 (11) | 0.0452 (11) | 0.0380 (10) | −0.0038 (9) | 0.0079 (9) | −0.0012 (9) |
| C10 | 0.0426 (11) | 0.0632 (14) | 0.0420 (11) | −0.0011 (10) | 0.0067 (9) | 0.0020 (10) |
| C11 | 0.0521 (13) | 0.0794 (17) | 0.0389 (12) | 0.0064 (12) | 0.0032 (10) | −0.0006 (11) |
| C12 | 0.0751 (17) | 0.0743 (17) | 0.0377 (12) | 0.0038 (14) | 0.0167 (12) | 0.0014 (11) |
| C13 | 0.0653 (15) | 0.0708 (16) | 0.0548 (14) | −0.0113 (13) | 0.0253 (12) | −0.0009 (12) |
| C14 | 0.0496 (12) | 0.0612 (15) | 0.0460 (12) | −0.0124 (11) | 0.0082 (10) | −0.0036 (10) |
| C15 | 0.0418 (11) | 0.0613 (13) | 0.0324 (10) | −0.0050 (10) | 0.0044 (8) | 0.0025 (9) |
| C16 | 0.0545 (14) | 0.0766 (17) | 0.0467 (13) | 0.0072 (12) | 0.0045 (11) | −0.0137 (12) |
| C17 | 0.0558 (14) | 0.0840 (19) | 0.0525 (14) | −0.0063 (14) | −0.0059 (11) | −0.0184 (13) |
| C18 | 0.0450 (12) | 0.0784 (17) | 0.0503 (13) | −0.0020 (12) | 0.0044 (10) | 0.0105 (13) |
| C19 | 0.0594 (15) | 0.0687 (16) | 0.0628 (17) | 0.0113 (13) | 0.0143 (13) | 0.0015 (13) |
| C20 | 0.0597 (15) | 0.0565 (14) | 0.0471 (13) | −0.0021 (11) | 0.0065 (11) | −0.0025 (10) |
| C21 | 0.0499 (15) | 0.124 (3) | 0.089 (2) | 0.0031 (17) | 0.0002 (15) | 0.009 (2) |
| Se1—C8 | 1.905 (2) | C10—H10 | 0.9300 |
| Se1—H1A | 0.8200 | C11—C12 | 1.365 (4) |
| S1—O1 | 1.432 (2) | C11—H11 | 0.9300 |
| S1—O2 | 1.436 (2) | C12—C13 | 1.375 (4) |
| S1—C15 | 1.765 (2) | C12—H12 | 0.9300 |
| S1—C1 | 1.797 (2) | C13—C14 | 1.384 (4) |
| C1—C8 | 1.335 (3) | C13—H13 | 0.9300 |
| C1—C2 | 1.484 (3) | C14—H14 | 0.9300 |
| C2—C7 | 1.382 (4) | C15—C16 | 1.370 (3) |
| C2—C3 | 1.384 (4) | C15—C20 | 1.384 (4) |
| C3—C4 | 1.383 (4) | C16—C17 | 1.384 (4) |
| C3—H3 | 0.9300 | C16—H16 | 0.9300 |
| C4—C5 | 1.378 (6) | C17—C18 | 1.374 (4) |
| C4—H4 | 0.9300 | C17—H17 | 0.9300 |
| C5—C6 | 1.370 (6) | C18—C19 | 1.378 (4) |
| C5—H5 | 0.9300 | C18—C21 | 1.510 (4) |
| C6—C7 | 1.360 (5) | C19—C20 | 1.378 (4) |
| C6—H6 | 0.9300 | C19—H19 | 0.9300 |
| C7—H7 | 0.9300 | C20—H20 | 0.9300 |
| C8—C9 | 1.482 (3) | C21—H21A | 0.9600 |
| C9—C10 | 1.386 (3) | C21—H21B | 0.9600 |
| C9—C14 | 1.389 (3) | C21—H21C | 0.9600 |
| C10—C11 | 1.383 (3) | ||
| C8—Se1—H1A | 109.5 | C12—C11—C10 | 120.6 (2) |
| O1—S1—O2 | 118.66 (13) | C12—C11—H11 | 119.7 |
| O1—S1—C15 | 107.67 (12) | C10—C11—H11 | 119.7 |
| O2—S1—C15 | 108.88 (11) | C11—C12—C13 | 119.9 (2) |
| O1—S1—C1 | 105.69 (11) | C11—C12—H12 | 120.1 |
| O2—S1—C1 | 110.04 (11) | C13—C12—H12 | 120.1 |
| C15—S1—C1 | 105.04 (10) | C12—C13—C14 | 120.3 (2) |
| C8—C1—C2 | 121.23 (19) | C12—C13—H13 | 119.9 |
| C8—C1—S1 | 124.04 (17) | C14—C13—H13 | 119.9 |
| C2—C1—S1 | 114.69 (16) | C13—C14—C9 | 120.1 (2) |
| C7—C2—C3 | 118.4 (3) | C13—C14—H14 | 119.9 |
| C7—C2—C1 | 120.8 (2) | C9—C14—H14 | 119.9 |
| C3—C2—C1 | 120.8 (2) | C16—C15—C20 | 120.8 (2) |
| C4—C3—C2 | 120.5 (3) | C16—C15—S1 | 119.97 (19) |
| C4—C3—H3 | 119.7 | C20—C15—S1 | 119.19 (18) |
| C2—C3—H3 | 119.7 | C15—C16—C17 | 119.0 (2) |
| C5—C4—C3 | 119.4 (3) | C15—C16—H16 | 120.5 |
| C5—C4—H4 | 120.3 | C17—C16—H16 | 120.5 |
| C3—C4—H4 | 120.3 | C18—C17—C16 | 121.5 (2) |
| C6—C5—C4 | 120.3 (3) | C18—C17—H17 | 119.3 |
| C6—C5—H5 | 119.8 | C16—C17—H17 | 119.3 |
| C4—C5—H5 | 119.8 | C17—C18—C19 | 118.4 (2) |
| C7—C6—C5 | 119.9 (4) | C17—C18—C21 | 121.2 (3) |
| C7—C6—H6 | 120.0 | C19—C18—C21 | 120.4 (3) |
| C5—C6—H6 | 120.0 | C18—C19—C20 | 121.4 (3) |
| C6—C7—C2 | 121.4 (3) | C18—C19—H19 | 119.3 |
| C6—C7—H7 | 119.3 | C20—C19—H19 | 119.3 |
| C2—C7—H7 | 119.3 | C19—C20—C15 | 118.9 (2) |
| C1—C8—C9 | 124.8 (2) | C19—C20—H20 | 120.6 |
| C1—C8—Se1 | 122.99 (16) | C15—C20—H20 | 120.6 |
| C9—C8—Se1 | 112.23 (16) | C18—C21—H21A | 109.5 |
| C10—C9—C14 | 119.0 (2) | C18—C21—H21B | 109.5 |
| C10—C9—C8 | 119.96 (19) | H21A—C21—H21B | 109.5 |
| C14—C9—C8 | 121.05 (19) | C18—C21—H21C | 109.5 |
| C11—C10—C9 | 120.1 (2) | H21A—C21—H21C | 109.5 |
| C11—C10—H10 | 119.9 | H21B—C21—H21C | 109.5 |
| C9—C10—H10 | 119.9 | ||
| O1—S1—C1—C8 | 174.4 (2) | Se1—C8—C9—C14 | 57.8 (3) |
| O2—S1—C1—C8 | 45.2 (2) | C14—C9—C10—C11 | 0.1 (4) |
| C15—S1—C1—C8 | −71.9 (2) | C8—C9—C10—C11 | 179.3 (2) |
| O1—S1—C1—C2 | −7.9 (2) | C9—C10—C11—C12 | −0.4 (4) |
| O2—S1—C1—C2 | −137.13 (17) | C10—C11—C12—C13 | 0.4 (4) |
| C15—S1—C1—C2 | 105.83 (18) | C11—C12—C13—C14 | −0.2 (4) |
| C8—C1—C2—C7 | 74.7 (3) | C12—C13—C14—C9 | −0.1 (4) |
| S1—C1—C2—C7 | −103.1 (2) | C10—C9—C14—C13 | 0.1 (4) |
| C8—C1—C2—C3 | −105.4 (3) | C8—C9—C14—C13 | −179.1 (2) |
| S1—C1—C2—C3 | 76.9 (3) | O1—S1—C15—C16 | −132.8 (2) |
| C7—C2—C3—C4 | −0.8 (4) | O2—S1—C15—C16 | −2.9 (2) |
| C1—C2—C3—C4 | 179.3 (2) | C1—S1—C15—C16 | 114.9 (2) |
| C2—C3—C4—C5 | 1.2 (5) | O1—S1—C15—C20 | 45.6 (2) |
| C3—C4—C5—C6 | −0.8 (5) | O2—S1—C15—C20 | 175.43 (19) |
| C4—C5—C6—C7 | 0.0 (5) | C1—S1—C15—C20 | −66.7 (2) |
| C5—C6—C7—C2 | 0.4 (5) | C20—C15—C16—C17 | −0.6 (4) |
| C3—C2—C7—C6 | 0.0 (4) | S1—C15—C16—C17 | 177.8 (2) |
| C1—C2—C7—C6 | 179.9 (3) | C15—C16—C17—C18 | 1.2 (4) |
| C2—C1—C8—C9 | 4.0 (3) | C16—C17—C18—C19 | −0.5 (4) |
| S1—C1—C8—C9 | −178.47 (17) | C16—C17—C18—C21 | 178.8 (3) |
| C2—C1—C8—Se1 | −176.64 (16) | C17—C18—C19—C20 | −0.9 (4) |
| S1—C1—C8—Se1 | 0.9 (3) | C21—C18—C19—C20 | 179.8 (3) |
| C1—C8—C9—C10 | 58.1 (3) | C18—C19—C20—C15 | 1.5 (4) |
| Se1—C8—C9—C10 | −121.4 (2) | C16—C15—C20—C19 | −0.7 (4) |
| C1—C8—C9—C14 | −122.7 (3) | S1—C15—C20—C19 | −179.1 (2) |
| Cg1 is the centroid of the C9–C14 ring. |
| H··· | ||||
| Se1—H1A···O2 | 0.82 | 2.57 | 3.141 (2) | 128 |
| C4—H4···O1i | 0.93 | 2.75 | 3.557 (4) | 145 |
| C17—H17···O1ii | 0.93 | 2.65 | 3.567 (3) | 168 |
| C5—H5···Cg1iii | 0.93 | 2.92 | 3.615 | 132 |
| C19—H19···Cg1iv | 0.93 | 2.88 | 3.791 | 165 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C9–C14 ring.
| H⋯ | ||||
|---|---|---|---|---|
| Se1—H1 | 0.82 | 2.57 | 3.141 (2) | 128 |
| C4—H4⋯O1i | 0.93 | 2.75 | 3.557 (4) | 145 |
| C17—H17⋯O1ii | 0.93 | 2.65 | 3.567 (3) | 168 |
| C5—H5⋯ | 0.93 | 2.92 | 3.615 | 132 |
| C19—H19⋯ | 0.93 | 2.88 | 3.791 | 165 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .