Literature DB >> 22347052

Ethyl 2-(4-carb-oxy-benzyl-idene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate-N,N-dimethyl-formamide (1/1).

Noor Afshan Banu, V Bheema Raju.   

Abstract

In the title compound, C(24)H(20)N(2)O(5)S·C(3)H(7)NO, a benzene ring is positioned axially to the pyrimidine ring, which adopts a twist-boat conformation, and is inclined to its mean plane by 85.36 (7)°. In the crystal, inter-molecular C-H⋯O inter-actions result in centrosymmetric head-to-head dimers with an R(2) (2)(14) graph-set motif along the b axis. Pairs of C-H⋯O and O-H⋯O hydrogen bonds form centrosymmetric head-to-head dimers about inversion centres, corresponding to an R(2) (2)(7) graph-set motif along the a axis.

Entities:  

Year:  2012        PMID: 22347052      PMCID: PMC3275196          DOI: 10.1107/S1600536812000050

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological properties of pyrimidine derivatives and general background, see: Alam et al. (2010 ▶). For a related structure, see: Jotani et al. (2010 ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H20N2O5S·C3H7NO M = 521.58 Triclinic, a = 8.4146 (4) Å b = 12.0699 (5) Å c = 14.0185 (6) Å α = 71.799 (2)° β = 78.753 (2)° γ = 86.488 (2)° V = 1326.56 (10) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 296 K 0.20 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.967, T max = 0.975 23685 measured reflections 5788 independent reflections 3560 reflections with I > 2σ(I)’ R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.178 S = 1.04 5788 reflections 339 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812000050/pv2495sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000050/pv2495Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000050/pv2495Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20N2O5S·C3H7NOZ = 2
Mr = 521.58F(000) = 548
Triclinic, P1Dx = 1.306 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4146 (4) ÅCell parameters from 5788 reflections
b = 12.0699 (5) Åθ = 1.6–27.0°
c = 14.0185 (6) ŵ = 0.17 mm1
α = 71.799 (2)°T = 296 K
β = 78.753 (2)°Block, yellow
γ = 86.488 (2)°0.20 × 0.20 × 0.15 mm
V = 1326.56 (10) Å3
Bruker SMART APEX CCD detector diffractometer5788 independent reflections
Radiation source: fine-focus sealed tube3560 reflections with I > 2σ(I)'
graphiteRint = 0.033
ω scansθmax = 27.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −10→8
Tmin = 0.967, Tmax = 0.975k = −15→14
23685 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.103P)2] where P = (Fo2 + 2Fc2)/3
5788 reflections(Δ/σ)max < 0.001
339 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N220.6187 (3)0.93566 (19)0.32137 (16)0.0806 (6)
C810.4744 (4)0.9872 (3)0.3273 (2)0.0860 (8)
H810.44951.04140.26850.103*
C820.7324 (4)0.9640 (3)0.2250 (2)0.1124 (11)
H82A0.68251.01700.17250.169*
H82B0.76310.89390.20740.169*
H82C0.82700.99970.23150.169*
C830.6722 (5)0.8554 (3)0.4099 (3)0.1303 (14)
H83A0.62220.87550.46990.195*
H83B0.78780.86000.40140.195*
H83C0.64200.77740.41700.195*
O110.3700 (2)0.96682 (18)0.40786 (15)0.1004 (6)
S10.30622 (7)0.34995 (5)0.35943 (4)0.0618 (2)
N10.1227 (2)0.48407 (14)0.24302 (12)0.0505 (4)
N20.0013 (2)0.40960 (16)0.41686 (12)0.0610 (5)
O1−0.29300 (18)0.64562 (14)0.17146 (12)0.0718 (5)
O2−0.4299 (2)0.5986 (2)0.33005 (16)0.1173 (8)
O30.27644 (19)0.52114 (14)0.08332 (11)0.0702 (5)
O51.2299 (2)0.16084 (16)0.22813 (13)0.0837 (5)
O41.0939 (2)0.07417 (16)0.38392 (13)0.0839 (5)
H41.18350.04690.39280.126*
C10.5294 (3)0.38515 (19)0.17748 (16)0.0588 (6)
H10.54400.42120.10730.071*
C20.3822 (3)0.40097 (18)0.22858 (15)0.0538 (5)
C30.2609 (3)0.47380 (18)0.17423 (15)0.0536 (5)
C40.1213 (3)0.42052 (18)0.34338 (15)0.0527 (5)
C5−0.0051 (2)0.56909 (17)0.21469 (15)0.0514 (5)
H5−0.03180.56460.15100.062*
C6−0.1543 (3)0.53676 (19)0.29785 (16)0.0562 (5)
C7−0.1450 (3)0.46191 (19)0.39185 (15)0.0579 (6)
C8−0.2833 (3)0.4227 (2)0.47932 (17)0.0775 (7)
H8A−0.28330.46580.52640.116*
H8B−0.27220.34100.51350.116*
H8C−0.38340.43610.45430.116*
C9−0.3069 (3)0.5942 (2)0.27206 (18)0.0668 (6)
C10−0.4341 (3)0.7095 (2)0.1380 (2)0.0848 (8)
H10A−0.46290.76970.17080.102*
H10B−0.52570.65720.15560.102*
C11−0.3925 (5)0.7620 (4)0.0270 (3)0.1493 (17)
H11A−0.29730.80930.01030.224*
H11B−0.48090.80970.00300.224*
H11C−0.37210.7015−0.00490.224*
C120.6698 (3)0.32199 (18)0.21211 (15)0.0565 (5)
C130.6715 (3)0.2478 (2)0.31156 (17)0.0687 (6)
H130.57660.23680.36020.082*
C140.8092 (3)0.1918 (2)0.33831 (17)0.0662 (6)
H140.80700.14260.40450.079*
C150.9529 (3)0.20750 (18)0.26740 (16)0.0575 (5)
C160.9541 (3)0.2815 (2)0.16903 (16)0.0626 (6)
H161.04980.29310.12100.075*
C170.8164 (3)0.3372 (2)0.14224 (16)0.0631 (6)
H170.81980.38650.07600.076*
C181.1052 (3)0.1454 (2)0.29103 (18)0.0642 (6)
C190.0875 (3)0.7233 (2)0.2777 (2)0.0732 (7)
H190.06730.67140.34360.088*
C200.1494 (4)0.8341 (2)0.2594 (3)0.0925 (9)
H200.17190.85570.31360.111*
C210.1769 (3)0.9101 (3)0.1647 (3)0.0941 (9)
H210.21840.98360.15360.113*
C220.1446 (4)0.8801 (2)0.0860 (3)0.0948 (9)
H220.16360.93350.02070.114*
C230.0835 (3)0.7708 (2)0.10042 (18)0.0736 (7)
H1230.06090.75130.04530.088*
C240.0565 (2)0.69169 (18)0.19627 (16)0.0563 (5)
U11U22U33U12U13U23
N220.0713 (15)0.0885 (15)0.0760 (14)0.0075 (11)−0.0098 (11)−0.0205 (12)
C810.0765 (19)0.099 (2)0.0758 (18)0.0023 (16)−0.0131 (15)−0.0185 (15)
C820.096 (2)0.136 (3)0.093 (2)−0.003 (2)0.0108 (18)−0.035 (2)
C830.138 (3)0.138 (3)0.092 (2)0.052 (2)−0.030 (2)−0.007 (2)
O110.0815 (14)0.1229 (17)0.0802 (13)0.0172 (11)−0.0075 (11)−0.0152 (11)
S10.0619 (4)0.0721 (4)0.0442 (3)0.0072 (3)−0.0036 (2)−0.0126 (3)
N10.0504 (10)0.0541 (10)0.0437 (9)0.0008 (8)−0.0037 (7)−0.0136 (7)
N20.0576 (12)0.0769 (13)0.0442 (10)−0.0033 (9)0.0006 (8)−0.0182 (9)
O10.0460 (9)0.0916 (12)0.0690 (10)0.0024 (8)−0.0089 (7)−0.0137 (8)
O20.0598 (12)0.172 (2)0.0863 (13)0.0252 (12)0.0123 (10)−0.0116 (13)
O30.0627 (10)0.0922 (12)0.0420 (8)0.0120 (8)0.0000 (7)−0.0091 (8)
O50.0639 (11)0.1041 (14)0.0731 (11)0.0089 (9)−0.0061 (9)−0.0185 (9)
O40.0758 (12)0.0851 (12)0.0725 (11)0.0157 (10)−0.0111 (9)−0.0025 (9)
C10.0627 (14)0.0618 (13)0.0480 (11)0.0066 (10)−0.0040 (10)−0.0163 (10)
C20.0579 (13)0.0552 (12)0.0446 (11)0.0009 (10)−0.0025 (9)−0.0144 (9)
C30.0528 (12)0.0596 (13)0.0449 (11)0.0011 (9)−0.0006 (9)−0.0167 (10)
C40.0566 (13)0.0578 (13)0.0428 (11)−0.0036 (10)−0.0052 (9)−0.0162 (9)
C50.0454 (11)0.0616 (13)0.0460 (10)−0.0023 (9)−0.0043 (9)−0.0170 (9)
C60.0476 (12)0.0684 (14)0.0536 (12)−0.0072 (10)−0.0014 (9)−0.0234 (11)
C70.0493 (13)0.0750 (15)0.0512 (12)−0.0068 (10)−0.0005 (9)−0.0260 (11)
C80.0581 (15)0.111 (2)0.0544 (13)−0.0087 (13)0.0049 (11)−0.0200 (13)
C90.0487 (13)0.0808 (16)0.0644 (14)−0.0059 (11)−0.0017 (11)−0.0171 (12)
C100.0514 (15)0.0922 (19)0.099 (2)0.0032 (13)−0.0153 (13)−0.0124 (16)
C110.096 (3)0.213 (4)0.095 (2)0.045 (3)−0.021 (2)0.009 (3)
C120.0574 (13)0.0597 (13)0.0496 (11)0.0056 (10)−0.0006 (10)−0.0197 (10)
C130.0628 (15)0.0707 (15)0.0581 (13)0.0114 (11)0.0076 (11)−0.0127 (11)
C140.0710 (16)0.0635 (14)0.0541 (13)0.0105 (11)−0.0035 (11)−0.0111 (11)
C150.0604 (14)0.0545 (13)0.0604 (13)0.0045 (10)−0.0100 (10)−0.0232 (10)
C160.0619 (14)0.0734 (15)0.0491 (12)0.0004 (11)0.0002 (10)−0.0205 (11)
C170.0643 (15)0.0748 (15)0.0456 (11)0.0054 (11)−0.0046 (10)−0.0161 (10)
C180.0657 (16)0.0651 (15)0.0643 (14)0.0028 (11)−0.0126 (12)−0.0238 (12)
C190.0745 (17)0.0701 (16)0.0810 (17)−0.0003 (12)−0.0282 (13)−0.0235 (13)
C200.094 (2)0.0787 (19)0.121 (3)−0.0065 (16)−0.0330 (19)−0.0448 (19)
C210.079 (2)0.0646 (18)0.132 (3)−0.0110 (14)0.0014 (18)−0.0317 (19)
C220.101 (2)0.0659 (18)0.091 (2)−0.0015 (15)0.0207 (17)−0.0094 (15)
C230.0810 (17)0.0666 (16)0.0605 (14)−0.0029 (13)0.0094 (12)−0.0148 (12)
C240.0385 (11)0.0596 (13)0.0665 (13)0.0034 (9)−0.0004 (9)−0.0197 (11)
N22—C811.330 (3)C6—C91.475 (3)
N22—C831.447 (3)C7—C81.493 (3)
N22—C821.450 (3)C8—H8A0.9600
C81—O111.254 (3)C8—H8B0.9600
C81—H810.9300C8—H8C0.9600
C82—H82A0.9600C10—C111.463 (4)
C82—H82B0.9600C10—H10A0.9700
C82—H82C0.9600C10—H10B0.9700
C83—H83A0.9600C11—H11A0.9600
C83—H83B0.9600C11—H11B0.9600
C83—H83C0.9600C11—H11C0.9600
S1—C21.743 (2)C12—C171.399 (3)
S1—C41.747 (2)C12—C131.404 (3)
N1—C41.374 (2)C13—C141.363 (3)
N1—C31.384 (2)C13—H130.9300
N1—C51.464 (3)C14—C151.388 (3)
N2—C41.274 (3)C14—H140.9300
N2—C71.404 (3)C15—C161.388 (3)
O1—C91.336 (3)C15—C181.486 (3)
O1—C101.451 (3)C16—C171.362 (3)
O2—C91.194 (3)C16—H160.9300
O3—C31.207 (2)C17—H170.9300
O5—C181.214 (3)C19—C241.384 (3)
O4—C181.306 (3)C19—C201.395 (3)
O4—H40.8200C19—H190.9300
C1—C21.339 (3)C20—C211.343 (4)
C1—C121.447 (3)C20—H200.9300
C1—H10.9300C21—C221.342 (4)
C2—C31.473 (3)C21—H210.9300
C5—C61.514 (3)C22—C231.387 (4)
C5—C241.526 (3)C22—H220.9300
C5—H50.9800C23—C241.369 (3)
C6—C71.359 (3)C23—H1230.9300
C81—N22—C83122.3 (3)O2—C9—O1121.6 (2)
C81—N22—C82120.1 (2)O2—C9—C6127.1 (2)
C83—N22—C82117.5 (3)O1—C9—C6111.30 (19)
O11—C81—N22123.6 (3)O1—C10—C11107.4 (2)
O11—C81—H81118.2O1—C10—H10A110.2
N22—C81—H81118.2C11—C10—H10A110.2
N22—C82—H82A109.5O1—C10—H10B110.2
N22—C82—H82B109.5C11—C10—H10B110.2
H82A—C82—H82B109.5H10A—C10—H10B108.5
N22—C82—H82C109.5C10—C11—H11A109.5
H82A—C82—H82C109.5C10—C11—H11B109.5
H82B—C82—H82C109.5H11A—C11—H11B109.5
N22—C83—H83A109.5C10—C11—H11C109.5
N22—C83—H83B109.5H11A—C11—H11C109.5
H83A—C83—H83B109.5H11B—C11—H11C109.5
N22—C83—H83C109.5C17—C12—C13117.0 (2)
H83A—C83—H83C109.5C17—C12—C1117.96 (19)
H83B—C83—H83C109.5C13—C12—C1125.00 (19)
C2—S1—C491.62 (10)C14—C13—C12121.4 (2)
C4—N1—C3115.96 (18)C14—C13—H13119.3
C4—N1—C5120.81 (16)C12—C13—H13119.3
C3—N1—C5122.69 (16)C13—C14—C15120.5 (2)
C4—N2—C7116.87 (17)C13—C14—H14119.8
C9—O1—C10115.94 (19)C15—C14—H14119.8
C18—O4—H4109.5C16—C15—C14119.0 (2)
C2—C1—C12131.4 (2)C16—C15—C18118.1 (2)
C2—C1—H1114.3C14—C15—C18122.9 (2)
C12—C1—H1114.3C17—C16—C15120.5 (2)
C1—C2—C3120.46 (19)C17—C16—H16119.7
C1—C2—S1128.94 (18)C15—C16—H16119.7
C3—C2—S1110.56 (14)C16—C17—C12121.5 (2)
O3—C3—N1123.1 (2)C16—C17—H17119.2
O3—C3—C2126.56 (19)C12—C17—H17119.2
N1—C3—C2110.27 (17)O5—C18—O4123.2 (2)
N2—C4—N1125.9 (2)O5—C18—C15121.9 (2)
N2—C4—S1122.68 (16)O4—C18—C15114.9 (2)
N1—C4—S1111.41 (15)C24—C19—C20119.0 (3)
N1—C5—C6108.64 (16)C24—C19—H19120.5
N1—C5—C24109.51 (16)C20—C19—H19120.5
C6—C5—C24113.05 (16)C21—C20—C19120.8 (3)
N1—C5—H5108.5C21—C20—H20119.6
C6—C5—H5108.5C19—C20—H20119.6
C24—C5—H5108.5C22—C21—C20120.2 (3)
C7—C6—C9122.49 (19)C22—C21—H21119.9
C7—C6—C5121.1 (2)C20—C21—H21119.9
C9—C6—C5116.33 (19)C21—C22—C23121.0 (3)
C6—C7—N2122.32 (18)C21—C22—H22119.5
C6—C7—C8126.0 (2)C23—C22—H22119.5
N2—C7—C8111.64 (19)C24—C23—C22119.6 (3)
C7—C8—H8A109.5C24—C23—H123120.2
C7—C8—H8B109.5C22—C23—H123120.2
H8A—C8—H8B109.5C23—C24—C19119.3 (2)
C7—C8—H8C109.5C23—C24—C5121.2 (2)
H8A—C8—H8C109.5C19—C24—C5119.48 (19)
H8B—C8—H8C109.5
C83—N22—C81—O11−3.7 (5)C10—O1—C9—O21.9 (4)
C82—N22—C81—O11179.8 (3)C10—O1—C9—C6−177.28 (19)
C12—C1—C2—C3177.9 (2)C7—C6—C9—O212.6 (4)
C12—C1—C2—S10.5 (4)C5—C6—C9—O2−165.1 (3)
C4—S1—C2—C1178.1 (2)C7—C6—C9—O1−168.28 (19)
C4—S1—C2—C30.47 (15)C5—C6—C9—O114.0 (3)
C4—N1—C3—O3177.18 (19)C9—O1—C10—C11178.0 (3)
C5—N1—C3—O3−11.1 (3)C2—C1—C12—C17−169.5 (2)
C4—N1—C3—C2−4.2 (2)C2—C1—C12—C139.1 (4)
C5—N1—C3—C2167.44 (16)C17—C12—C13—C14−1.0 (4)
C1—C2—C3—O32.6 (3)C1—C12—C13—C14−179.7 (2)
S1—C2—C3—O3−179.55 (19)C12—C13—C14—C150.5 (4)
C1—C2—C3—N1−175.93 (19)C13—C14—C15—C160.2 (4)
S1—C2—C3—N11.9 (2)C13—C14—C15—C18−177.7 (2)
C7—N2—C4—N13.8 (3)C14—C15—C16—C17−0.4 (3)
C7—N2—C4—S1−174.05 (14)C18—C15—C16—C17177.6 (2)
C3—N1—C4—N2−173.4 (2)C15—C16—C17—C12−0.1 (4)
C5—N1—C4—N214.7 (3)C13—C12—C17—C160.8 (3)
C3—N1—C4—S14.6 (2)C1—C12—C17—C16179.59 (19)
C5—N1—C4—S1−167.20 (14)C16—C15—C18—O52.5 (3)
C2—S1—C4—N2175.35 (19)C14—C15—C18—O5−179.6 (2)
C2—S1—C4—N1−2.79 (15)C16—C15—C18—O4−177.68 (19)
C4—N1—C5—C6−23.1 (2)C14—C15—C18—O40.2 (3)
C3—N1—C5—C6165.58 (17)C24—C19—C20—C210.9 (4)
C4—N1—C5—C24100.8 (2)C19—C20—C21—C220.1 (5)
C3—N1—C5—C24−70.5 (2)C20—C21—C22—C23−0.3 (5)
N1—C5—C6—C716.6 (3)C21—C22—C23—C24−0.5 (4)
C24—C5—C6—C7−105.2 (2)C22—C23—C24—C191.5 (4)
N1—C5—C6—C9−165.65 (17)C22—C23—C24—C5−177.9 (2)
C24—C5—C6—C972.6 (2)C20—C19—C24—C23−1.6 (4)
C9—C6—C7—N2−178.39 (19)C20—C19—C24—C5177.7 (2)
C5—C6—C7—N2−0.8 (3)N1—C5—C24—C23111.4 (2)
C9—C6—C7—C83.0 (4)C6—C5—C24—C23−127.4 (2)
C5—C6—C7—C8−179.4 (2)N1—C5—C24—C19−67.9 (2)
C4—N2—C7—C6−10.7 (3)C6—C5—C24—C1953.3 (3)
C4—N2—C7—C8168.12 (19)
D—H···AD—HH···AD···AD—H···A
C81—H81···O5i0.932.323.053 (3)135
O4—H4···O11ii0.821.812.618 (3)170
C17—H17···O3iii0.932.433.310 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C81—H81⋯O5i0.932.323.053 (3)135
O4—H4⋯O11ii0.821.812.618 (3)170
C17—H17⋯O3iii0.932.433.310 (3)157

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl (2Z)-2-(3-methoxy-benzyl-idene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Mukesh M Jotani; Bharat B Baldaniya; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13
  2 in total

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