Literature DB >> 22347043

[(4S,5S)-2,2-Dimethyl-1,3-dioxolane-4,5-di-yl]bis-[N-(thio-phen-2-yl-methyl-idene)methanamine].

Yan Jiang1, Jing Bian, Xiaoqiang Sun.   

Abstract

In the title compound, C(17)H(20)N(2)O(2)S(2), the five-membered heterocycle exhibits an envelope conformation and the mol-ecular chirality and configuration are well preserved from l-tartaric acid. The dihedral angle between the two thio-phene rings is 17.0 (2)°. In the crystal, mol-ecules are linked by C-H⋯O and C-H⋯S hydrogen inter-actions, which are effective in the stabilization of the crystal structure.

Entities:  

Year:  2012        PMID: 22347043      PMCID: PMC3275187          DOI: 10.1107/S1600536812001298

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to spiranes, see: Takashi et al. (2011 ▶); Yong (2001 ▶).

Experimental

Crystal data

C17H20N2O2S2 M = 348.47 Monoclinic, a = 10.475 (2) Å b = 7.4792 (15) Å c = 11.533 (2) Å β = 92.339 (4)° V = 902.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 296 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.942, T max = 0.956 5249 measured reflections 3140 independent reflections 2575 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.092 S = 1.02 3140 reflections 211 parameters 19 restraints H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1322 Friedel pairs Flack parameter: 0.00 (8) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812001298/fk2048sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812001298/fk2048Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812001298/fk2048Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20N2O2S2F(000) = 368
Mr = 348.47Dx = 1.282 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1762 reflections
a = 10.475 (2) Åθ = 2.6–24.3°
b = 7.4792 (15) ŵ = 0.31 mm1
c = 11.533 (2) ÅT = 296 K
β = 92.339 (4)°Block, colourless
V = 902.8 (3) Å30.20 × 0.18 × 0.15 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3140 independent reflections
Radiation source: fine-focus sealed tube2575 reflections with I > 2σ(I)
graphiteRint = 0.043
phi and ω scansθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −8→12
Tmin = 0.942, Tmax = 0.956k = −9→8
5249 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0442P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3140 reflectionsΔρmax = 0.14 e Å3
211 parametersΔρmin = −0.18 e Å3
19 restraintsAbsolute structure: Flack (1983), 1322 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.51034 (7)0.34500 (12)0.54421 (6)0.0557 (2)
S21.38990 (7)0.13103 (10)1.18352 (6)0.0563 (2)
C10.5853 (2)0.1387 (4)0.7331 (2)0.0410 (6)
H10.56790.05690.79110.049*
C20.4830 (2)0.1972 (4)0.6549 (2)0.0401 (6)
N10.6976 (2)0.1954 (3)0.72485 (19)0.0479 (6)
C31.4097 (2)0.2230 (4)1.0493 (2)0.0437 (6)
O11.10405 (16)−0.0651 (3)0.77918 (17)0.0565 (5)
C41.3054 (3)0.2405 (4)0.9630 (2)0.0471 (7)
H41.32100.30270.89530.056*
N21.1964 (2)0.1774 (4)0.97401 (19)0.0530 (6)
C51.0211 (3)−0.1649 (4)0.7025 (2)0.0537 (7)
C61.1023 (3)0.2134 (4)0.8812 (3)0.0531 (7)
H6A1.14560.26090.81510.064*
H6B1.04400.30460.90690.064*
C70.7933 (3)0.1333 (5)0.8120 (2)0.0567 (8)
H7A0.76280.02560.84870.068*
H7B0.80610.22400.87150.068*
C81.5345 (3)0.2735 (4)1.0366 (2)0.0495 (7)
H81.56440.32570.96980.059*
C91.6117 (3)0.2371 (5)1.1363 (3)0.0608 (8)
H91.69840.26381.14300.073*
C100.3523 (3)0.3486 (6)0.5036 (3)0.0653 (8)
H100.31800.41580.44190.078*
C110.9188 (2)0.0949 (4)0.7565 (2)0.0457 (7)
H110.94260.19710.70880.055*
O20.90851 (19)−0.0604 (3)0.6865 (2)0.0779 (7)
C120.3575 (3)0.1538 (5)0.6571 (2)0.0538 (7)
H120.32420.07390.70970.065*
C130.2831 (3)0.2434 (5)0.5706 (3)0.0670 (9)
H130.19490.23060.56120.080*
C141.5472 (3)0.1603 (5)1.2200 (3)0.0615 (9)
H141.58450.12621.29120.074*
C151.0267 (2)0.0527 (4)0.8430 (2)0.0453 (7)
H150.9937−0.00920.91050.054*
C160.9858 (4)−0.3401 (5)0.7552 (4)0.0851 (11)
H16A0.9536−0.31990.83080.128*
H16B1.0599−0.41550.76170.128*
H16C0.9212−0.39720.70670.128*
C171.0853 (3)−0.1869 (6)0.5889 (3)0.0855 (12)
H17A1.0303−0.25290.53580.128*
H17B1.1642−0.25040.60160.128*
H17C1.1022−0.07120.55680.128*
U11U22U33U12U13U23
S10.0541 (4)0.0605 (5)0.0525 (4)0.0002 (4)0.0023 (3)0.0154 (4)
S20.0611 (5)0.0610 (5)0.0466 (4)−0.0102 (4)−0.0018 (3)0.0023 (4)
C10.0447 (15)0.0404 (15)0.0378 (13)0.0071 (13)0.0013 (11)−0.0003 (13)
C20.0392 (14)0.0417 (15)0.0394 (13)0.0054 (12)0.0011 (11)−0.0008 (12)
N10.0394 (13)0.0531 (16)0.0507 (13)0.0081 (11)−0.0034 (10)0.0050 (11)
C30.0493 (16)0.0386 (15)0.0428 (14)−0.0064 (13)−0.0028 (12)−0.0072 (12)
O10.0404 (10)0.0560 (13)0.0717 (12)0.0093 (9)−0.0144 (9)−0.0117 (11)
C40.0574 (18)0.0430 (16)0.0401 (14)−0.0056 (14)−0.0061 (13)−0.0031 (13)
N20.0486 (13)0.0649 (18)0.0445 (12)−0.0056 (12)−0.0102 (10)−0.0034 (12)
C50.0486 (15)0.0469 (17)0.0646 (17)0.0053 (15)−0.0102 (13)−0.0117 (16)
C60.0515 (16)0.0516 (19)0.0553 (17)0.0053 (14)−0.0082 (14)−0.0019 (15)
C70.0461 (16)0.072 (2)0.0519 (16)0.0054 (16)−0.0050 (13)0.0108 (17)
C80.0515 (18)0.0472 (17)0.0497 (16)−0.0113 (13)0.0018 (14)−0.0049 (14)
C90.0450 (16)0.062 (2)0.075 (2)−0.0085 (15)−0.0073 (16)−0.0150 (18)
C100.0618 (19)0.077 (2)0.0566 (17)0.008 (2)−0.0081 (15)0.020 (2)
C110.0415 (14)0.0458 (17)0.0489 (14)0.0037 (12)−0.0092 (12)−0.0010 (12)
O20.0607 (13)0.0720 (16)0.0975 (16)0.0196 (12)−0.0402 (12)−0.0357 (14)
C120.0469 (15)0.063 (2)0.0516 (16)−0.0044 (15)0.0005 (13)0.0115 (16)
C130.0433 (17)0.084 (3)0.072 (2)0.0022 (17)−0.0138 (16)0.015 (2)
C140.0631 (19)0.061 (2)0.0581 (18)0.0014 (17)−0.0218 (15)0.0003 (17)
C150.0390 (14)0.0486 (16)0.0476 (15)0.0041 (13)−0.0089 (12)0.0022 (14)
C160.086 (2)0.061 (2)0.108 (3)−0.010 (2)−0.003 (2)0.004 (2)
C170.073 (2)0.106 (4)0.077 (2)−0.012 (2)0.0019 (19)−0.017 (2)
S1—C101.703 (3)C7—H7A0.9700
S1—C21.721 (3)C7—H7B0.9700
S2—C141.699 (3)C8—C91.404 (4)
S2—C31.714 (3)C8—H80.9300
C1—N11.258 (3)C9—C141.331 (5)
C1—C21.440 (3)C9—H90.9300
C1—H10.9300C10—C131.337 (5)
C2—C121.355 (4)C10—H100.9300
N1—C71.466 (3)C11—O21.417 (3)
C3—C81.375 (4)C11—C151.510 (3)
C3—C41.453 (3)C11—H110.9800
O1—C151.422 (3)C12—C131.410 (4)
O1—C51.425 (3)C12—H120.9300
C4—N21.247 (4)C13—H130.9300
C4—H40.9300C14—H140.9300
N2—C61.450 (3)C15—H150.9800
C5—O21.421 (3)C16—H16A0.9600
C5—C161.497 (5)C16—H16B0.9600
C5—C171.505 (4)C16—H16C0.9600
C6—C151.496 (4)C17—H17A0.9600
C6—H6A0.9700C17—H17B0.9600
C6—H6B0.9700C17—H17C0.9600
C7—C111.513 (4)
C10—S1—C291.42 (15)C14—C9—H9123.7
C14—S2—C391.17 (15)C8—C9—H9123.7
N1—C1—C2121.6 (3)C13—C10—S1112.0 (2)
N1—C1—H1119.2C13—C10—H10124.0
C2—C1—H1119.2S1—C10—H10124.0
C12—C2—C1127.8 (3)O2—C11—C15104.0 (2)
C12—C2—S1111.0 (2)O2—C11—C7110.4 (2)
C1—C2—S1121.2 (2)C15—C11—C7113.6 (2)
C1—N1—C7117.2 (2)O2—C11—H11109.5
C8—C3—C4126.4 (3)C15—C11—H11109.5
C8—C3—S2110.9 (2)C7—C11—H11109.5
C4—C3—S2122.6 (2)C11—O2—C5109.5 (2)
C15—O1—C5107.45 (19)C2—C12—C13112.4 (3)
N2—C4—C3124.2 (3)C2—C12—H12123.8
N2—C4—H4117.9C13—C12—H12123.8
C3—C4—H4117.9C10—C13—C12113.1 (3)
C4—N2—C6116.9 (2)C10—C13—H13123.5
O2—C5—O1105.9 (2)C12—C13—H13123.5
O2—C5—C16108.4 (3)C9—C14—S2113.0 (2)
O1—C5—C16111.2 (3)C9—C14—H14123.5
O2—C5—C17110.2 (3)S2—C14—H14123.5
O1—C5—C17108.3 (3)O1—C15—C6110.1 (2)
C16—C5—C17112.6 (3)O1—C15—C11102.4 (2)
N2—C6—C15113.8 (2)C6—C15—C11113.5 (2)
N2—C6—H6A108.8O1—C15—H15110.2
C15—C6—H6A108.8C6—C15—H15110.2
N2—C6—H6B108.8C11—C15—H15110.2
C15—C6—H6B108.8C5—C16—H16A109.5
H6A—C6—H6B107.7C5—C16—H16B109.5
N1—C7—C11110.6 (2)H16A—C16—H16B109.5
N1—C7—H7A109.5C5—C16—H16C109.5
C11—C7—H7A109.5H16A—C16—H16C109.5
N1—C7—H7B109.5H16B—C16—H16C109.5
C11—C7—H7B109.5C5—C17—H17A109.5
H7A—C7—H7B108.1C5—C17—H17B109.5
C3—C8—C9112.2 (3)H17A—C17—H17B109.5
C3—C8—H8123.9C5—C17—H17C109.5
C9—C8—H8123.9H17A—C17—H17C109.5
C14—C9—C8112.7 (3)H17B—C17—H17C109.5
N1—C1—C2—C12−176.7 (3)N1—C7—C11—C15172.7 (3)
N1—C1—C2—S11.3 (4)C15—C11—O2—C5−16.5 (3)
C10—S1—C2—C120.7 (3)C7—C11—O2—C5−138.8 (3)
C10—S1—C2—C1−177.6 (2)O1—C5—O2—C11−3.2 (3)
C2—C1—N1—C7177.3 (2)C16—C5—O2—C11116.2 (3)
C14—S2—C3—C8−0.2 (2)C17—C5—O2—C11−120.1 (3)
C14—S2—C3—C4179.2 (3)C1—C2—C12—C13176.8 (3)
C8—C3—C4—N2172.8 (3)S1—C2—C12—C13−1.3 (4)
S2—C3—C4—N2−6.5 (4)S1—C10—C13—C12−0.8 (4)
C3—C4—N2—C6177.7 (3)C2—C12—C13—C101.4 (5)
C15—O1—C5—O223.2 (3)C8—C9—C14—S2−0.9 (4)
C15—O1—C5—C16−94.4 (3)C3—S2—C14—C90.6 (3)
C15—O1—C5—C17141.4 (3)C5—O1—C15—C6−153.6 (2)
C4—N2—C6—C15134.1 (3)C5—O1—C15—C11−32.6 (3)
C1—N1—C7—C11140.1 (3)N2—C6—C15—O1−72.7 (3)
C4—C3—C8—C9−179.6 (3)N2—C6—C15—C11173.2 (2)
S2—C3—C8—C9−0.2 (3)O2—C11—C15—O129.7 (3)
C3—C8—C9—C140.7 (4)C7—C11—C15—O1149.8 (3)
C2—S1—C10—C130.1 (3)O2—C11—C15—C6148.3 (2)
N1—C7—C11—O2−70.8 (3)C7—C11—C15—C6−91.5 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.932.563.431 (4)155
C8—H8···S2i0.932.943.793 (3)153
C12—H12···O1ii0.932.683.466 (4)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O1i0.932.563.431 (4)155
C8—H8⋯S2i0.932.943.793 (3)153
C12—H12⋯O1ii0.932.683.466 (4)143

Symmetry codes: (i) ; (ii) .

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