Literature DB >> 22347041

3,6-Dimethyl-N,N-bis-(1-phenyl-eth-yl)-1,4-dihydro-1,2,4,5-tetra-zine-1,4-dicarboxamide.

Guo-Wu Rao1, Qi Li, Xiao-Jing Lu.   

Abstract

In the title mol-ecule, C(22)H(26)N(6)O(2), the central tetra-zine ring exhibits a boat conformation, and the two phenyl rings form a dihedral angle of 88.39 (6)°. In the crystal, weak N-H⋯O and C-H⋯O hydrogen bonds link mol-ecules into layers parallel to the ab plane.

Entities:  

Year:  2012        PMID: 22347041      PMCID: PMC3275185          DOI: 10.1107/S160053681200133X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structure–activity relationships in 1,2,4,5-tetra­zine derivatives, see: Hu et al. (2002 ▶, 2004 ▶); Rao & Hu (2005 ▶, 2006 ▶). For standard bond lengths in organic compounds, see: Allen et al. (1987 ▶). For details of the synthesis, see: Hu et al. (2004 ▶); Skorianetz & Kovats (1970 ▶, 1971 ▶); Sun et al. (2003 ▶).

Experimental

Crystal data

C22H26N6O2 M = 406.49 Monoclinic, a = 10.4653 (15) Å b = 8.0606 (12) Å c = 13.711 (2) Å β = 108.702 (1)° V = 1095.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.37 × 0.31 × 0.26 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.970, T max = 0.979 8343 measured reflections 4014 independent reflections 3809 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.072 S = 1.06 4014 reflections 276 parameters 1 restraint H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.09 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200133X/cv5230sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200133X/cv5230Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200133X/cv5230Isup3.cdx Supplementary material file. DOI: 10.1107/S160053681200133X/cv5230Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H26N6O2F(000) = 432
Mr = 406.49Dx = 1.232 Mg m3
Monoclinic, P21Melting point = 414–416 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 10.4653 (15) ÅCell parameters from 5504 reflections
b = 8.0606 (12) Åθ = 3.0–28.2°
c = 13.711 (2) ŵ = 0.08 mm1
β = 108.702 (1)°T = 298 K
V = 1095.5 (3) Å3Block, colourless
Z = 20.37 × 0.31 × 0.26 mm
Bruker SMART CCD area-detector diffractometer4014 independent reflections
Radiation source: fine-focus sealed tube3809 reflections with I > 2σ(I)
graphiteRint = 0.016
phi and ω scansθmax = 25.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −12→12
Tmin = 0.970, Tmax = 0.979k = −9→9
8343 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.0351P)2 + 0.1082P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4014 reflectionsΔρmax = 0.12 e Å3
276 parametersΔρmin = −0.09 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.079 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C60.61215 (13)0.43115 (19)0.45138 (10)0.0457 (3)
C20.46716 (15)0.3828 (3)0.42427 (14)0.0711 (5)
H2A0.45900.28920.46520.107*
H2B0.43300.35400.35260.107*
H2C0.41630.47420.43760.107*
C30.87224 (13)0.45508 (17)0.46277 (10)0.0426 (3)
C41.00874 (16)0.4220 (3)0.45547 (13)0.0663 (5)
H4A1.07460.48530.50690.099*
H4B1.01070.45330.38840.099*
H4C1.02900.30590.46640.099*
C50.57571 (13)0.67504 (18)0.33409 (9)0.0415 (3)
C10.57492 (15)0.9210 (2)0.23003 (11)0.0541 (4)
H10.47980.91980.22630.065*
C70.6404 (2)1.0771 (3)0.28855 (15)0.0829 (6)
H7A0.73521.07660.29740.124*
H7B0.62741.07900.35480.124*
H7C0.59951.17370.25010.124*
C80.58090 (13)0.92220 (18)0.12079 (10)0.0443 (3)
C90.46735 (16)0.9574 (3)0.03815 (13)0.0680 (5)
H90.38530.97600.04920.082*
C100.47455 (17)0.9652 (3)−0.06069 (14)0.0762 (6)
H100.39740.9893−0.11550.091*
C110.59346 (17)0.9381 (3)−0.07856 (12)0.0671 (5)
H110.59770.9432−0.14520.080*
C120.70692 (17)0.9031 (3)0.00266 (13)0.0667 (5)
H120.78850.8839−0.00890.080*
C130.70020 (14)0.8965 (2)0.10129 (11)0.0565 (4)
H130.77810.87410.15580.068*
C140.91963 (12)0.34611 (17)0.64199 (9)0.0372 (3)
C150.92829 (13)0.22812 (17)0.80845 (9)0.0400 (3)
H151.01550.28530.83140.048*
C160.85082 (18)0.2769 (2)0.88085 (12)0.0582 (4)
H16A0.76330.22590.85840.087*
H16B0.84080.39530.88050.087*
H16C0.89940.24030.94940.087*
C170.95569 (12)0.04323 (17)0.81019 (9)0.0381 (3)
C181.08568 (15)−0.0187 (2)0.84585 (12)0.0520 (4)
H181.15790.05420.87000.062*
C191.11002 (18)−0.1875 (2)0.84623 (14)0.0625 (4)
H191.1980−0.22730.87050.075*
C201.00479 (19)−0.2956 (2)0.81091 (13)0.0660 (4)
H201.0208−0.40910.81110.079*
C210.87547 (19)−0.2360 (2)0.77518 (16)0.0734 (5)
H210.8038−0.30950.75060.088*
C220.85099 (15)−0.0688 (2)0.77539 (13)0.0582 (4)
H220.7626−0.03030.75180.070*
N10.65789 (11)0.55475 (16)0.39939 (8)0.0449 (3)
N20.78681 (11)0.52904 (15)0.38757 (8)0.0461 (3)
N40.83276 (10)0.39916 (16)0.54557 (8)0.0433 (3)
N50.69652 (11)0.34775 (17)0.52228 (9)0.0489 (3)
N30.64017 (12)0.77317 (17)0.28704 (9)0.0520 (3)
H30.72150.74950.29010.062*
N60.85493 (10)0.28577 (15)0.70385 (8)0.0426 (3)
H60.76830.28050.68190.051*
O10.45662 (10)0.68726 (15)0.32671 (8)0.0580 (3)
O21.04136 (9)0.36545 (14)0.66573 (7)0.0497 (3)
U11U22U33U12U13U23
C60.0430 (7)0.0569 (8)0.0349 (6)−0.0023 (6)0.0093 (5)0.0085 (6)
C20.0442 (8)0.0935 (14)0.0659 (10)−0.0094 (9)0.0040 (7)0.0340 (10)
C30.0460 (7)0.0469 (8)0.0368 (6)0.0050 (6)0.0157 (6)0.0089 (6)
C40.0557 (9)0.0945 (13)0.0574 (9)0.0236 (9)0.0304 (7)0.0280 (9)
C50.0440 (7)0.0486 (8)0.0320 (6)0.0077 (6)0.0122 (5)0.0025 (6)
C10.0555 (8)0.0560 (9)0.0537 (8)0.0184 (7)0.0216 (7)0.0170 (7)
C70.1244 (17)0.0603 (11)0.0657 (12)0.0200 (12)0.0330 (12)0.0012 (9)
C80.0419 (7)0.0415 (7)0.0478 (7)0.0038 (6)0.0119 (6)0.0127 (6)
C90.0425 (8)0.0951 (14)0.0638 (10)0.0123 (8)0.0133 (7)0.0306 (10)
C100.0515 (9)0.1116 (17)0.0542 (10)0.0021 (10)0.0010 (7)0.0309 (10)
C110.0693 (10)0.0853 (13)0.0443 (8)−0.0056 (10)0.0148 (7)0.0120 (9)
C120.0543 (9)0.0927 (13)0.0554 (9)0.0067 (9)0.0209 (7)0.0111 (9)
C130.0400 (7)0.0769 (11)0.0476 (8)0.0076 (7)0.0071 (6)0.0097 (8)
C140.0391 (7)0.0386 (6)0.0332 (6)0.0035 (5)0.0104 (5)0.0027 (5)
C150.0402 (7)0.0460 (8)0.0304 (6)−0.0022 (5)0.0068 (5)0.0044 (5)
C160.0776 (11)0.0564 (9)0.0449 (8)0.0074 (8)0.0254 (7)−0.0005 (7)
C170.0414 (7)0.0457 (7)0.0261 (6)−0.0016 (6)0.0093 (5)0.0034 (5)
C180.0437 (8)0.0514 (8)0.0556 (9)−0.0002 (6)0.0087 (6)0.0029 (7)
C190.0574 (9)0.0585 (10)0.0672 (10)0.0145 (8)0.0139 (8)0.0049 (8)
C200.0843 (12)0.0439 (9)0.0656 (11)0.0055 (8)0.0182 (9)−0.0025 (8)
C210.0668 (11)0.0516 (10)0.0899 (14)−0.0146 (9)0.0084 (9)−0.0079 (9)
C220.0436 (8)0.0546 (10)0.0683 (9)−0.0037 (7)0.0064 (7)−0.0005 (8)
N10.0406 (6)0.0557 (7)0.0404 (6)0.0081 (5)0.0156 (5)0.0130 (5)
N20.0447 (6)0.0567 (7)0.0412 (6)0.0093 (5)0.0198 (5)0.0124 (5)
N40.0366 (5)0.0573 (7)0.0352 (5)−0.0019 (5)0.0103 (4)0.0103 (5)
N50.0384 (6)0.0635 (7)0.0407 (6)−0.0066 (5)0.0069 (5)0.0153 (6)
N30.0487 (7)0.0588 (8)0.0535 (7)0.0166 (6)0.0232 (6)0.0212 (6)
N60.0352 (6)0.0533 (7)0.0366 (6)0.0004 (5)0.0078 (4)0.0116 (5)
O10.0446 (6)0.0702 (7)0.0606 (7)0.0120 (5)0.0189 (5)0.0167 (6)
O20.0371 (5)0.0695 (7)0.0409 (5)0.0005 (5)0.0104 (4)0.0072 (5)
C6—N51.2752 (18)C11—H110.9300
C6—N11.3959 (18)C12—C131.377 (2)
C6—C21.4935 (19)C12—H120.9300
C2—H2A0.9600C13—H130.9300
C2—H2B0.9600C14—O21.2195 (15)
C2—H2C0.9600C14—N61.3351 (17)
C3—N21.2753 (17)C14—N41.4094 (16)
C3—N41.4013 (16)C15—N61.4684 (16)
C3—C41.4879 (19)C15—C171.516 (2)
C4—H4A0.9600C15—C161.5210 (19)
C4—H4B0.9600C15—H150.9800
C4—H4C0.9600C16—H16A0.9600
C5—O11.2217 (16)C16—H16B0.9600
C5—N31.3326 (18)C16—H16C0.9600
C5—N11.4098 (17)C17—C221.382 (2)
C1—N31.4678 (19)C17—C181.383 (2)
C1—C81.519 (2)C18—C191.384 (2)
C1—C71.531 (3)C18—H180.9300
C1—H10.9800C19—C201.366 (3)
C7—H7A0.9600C19—H190.9300
C7—H7B0.9600C20—C211.370 (3)
C7—H7C0.9600C20—H200.9300
C8—C131.3738 (19)C21—C221.372 (3)
C8—C91.383 (2)C21—H210.9300
C9—C101.383 (2)C22—H220.9300
C9—H90.9300N1—N21.4247 (15)
C10—C111.361 (2)N4—N51.4194 (15)
C10—H100.9300N3—H30.8600
C11—C121.372 (2)N6—H60.8600
N5—C6—N1119.91 (12)C8—C13—H13119.3
N5—C6—C2116.88 (13)C12—C13—H13119.3
N1—C6—C2123.12 (12)O2—C14—N6125.18 (11)
C6—C2—H2A109.5O2—C14—N4121.06 (11)
C6—C2—H2B109.5N6—C14—N4113.60 (11)
H2A—C2—H2B109.5N6—C15—C17111.31 (11)
C6—C2—H2C109.5N6—C15—C16109.54 (12)
H2A—C2—H2C109.5C17—C15—C16112.43 (12)
H2B—C2—H2C109.5N6—C15—H15107.8
N2—C3—N4119.54 (12)C17—C15—H15107.8
N2—C3—C4117.96 (12)C16—C15—H15107.8
N4—C3—C4122.39 (12)C15—C16—H16A109.5
C3—C4—H4A109.5C15—C16—H16B109.5
C3—C4—H4B109.5H16A—C16—H16B109.5
H4A—C4—H4B109.5C15—C16—H16C109.5
C3—C4—H4C109.5H16A—C16—H16C109.5
H4A—C4—H4C109.5H16B—C16—H16C109.5
H4B—C4—H4C109.5C22—C17—C18117.87 (14)
O1—C5—N3124.99 (12)C22—C17—C15120.80 (12)
O1—C5—N1120.43 (12)C18—C17—C15121.32 (12)
N3—C5—N1114.53 (11)C17—C18—C19121.00 (15)
N3—C1—C8111.78 (12)C17—C18—H18119.5
N3—C1—C7109.55 (13)C19—C18—H18119.5
C8—C1—C7111.00 (14)C20—C19—C18119.98 (16)
N3—C1—H1108.1C20—C19—H19120.0
C8—C1—H1108.1C18—C19—H19120.0
C7—C1—H1108.1C19—C20—C21119.65 (16)
C1—C7—H7A109.5C19—C20—H20120.2
C1—C7—H7B109.5C21—C20—H20120.2
H7A—C7—H7B109.5C20—C21—C22120.49 (16)
C1—C7—H7C109.5C20—C21—H21119.8
H7A—C7—H7C109.5C22—C21—H21119.8
H7B—C7—H7C109.5C21—C22—C17121.00 (15)
C13—C8—C9117.85 (14)C21—C22—H22119.5
C13—C8—C1121.22 (12)C17—C22—H22119.5
C9—C8—C1120.85 (13)C6—N1—C5125.16 (11)
C10—C9—C8120.65 (15)C6—N1—N2116.52 (11)
C10—C9—H9119.7C5—N1—N2115.78 (10)
C8—C9—H9119.7C3—N2—N1114.83 (10)
C11—C10—C9120.62 (15)C3—N4—C14126.05 (11)
C11—C10—H10119.7C3—N4—N5116.58 (10)
C9—C10—H10119.7C14—N4—N5114.94 (10)
C10—C11—C12119.37 (16)C6—N5—N4114.68 (11)
C10—C11—H11120.3C5—N3—C1121.22 (12)
C12—C11—H11120.3C5—N3—H3119.4
C11—C12—C13120.10 (15)C1—N3—H3119.4
C11—C12—H12119.9C14—N6—C15121.52 (11)
C13—C12—H12119.9C14—N6—H6119.2
C8—C13—C12121.39 (14)C15—N6—H6119.2
N3—C1—C8—C13−50.2 (2)O1—C5—N1—C67.0 (2)
C7—C1—C8—C1372.40 (19)N3—C5—N1—C6−175.44 (14)
N3—C1—C8—C9132.96 (16)O1—C5—N1—N2168.28 (13)
C7—C1—C8—C9−104.41 (19)N3—C5—N1—N2−14.20 (18)
C13—C8—C9—C100.4 (3)N4—C3—N2—N13.17 (19)
C1—C8—C9—C10177.27 (18)C4—C3—N2—N1179.28 (15)
C8—C9—C10—C110.2 (3)C6—N1—N2—C3−34.68 (18)
C9—C10—C11—C12−0.2 (3)C5—N1—N2—C3162.40 (13)
C10—C11—C12—C13−0.3 (3)N2—C3—N4—C14−166.55 (13)
C9—C8—C13—C12−0.8 (3)C4—C3—N4—C1417.5 (2)
C1—C8—C13—C12−177.74 (17)N2—C3—N4—N532.1 (2)
C11—C12—C13—C80.8 (3)C4—C3—N4—N5−143.84 (16)
N6—C15—C17—C22−57.93 (17)O2—C14—N4—C39.7 (2)
C16—C15—C17—C2265.39 (16)N6—C14—N4—C3−174.56 (14)
N6—C15—C17—C18121.65 (14)O2—C14—N4—N5171.31 (13)
C16—C15—C17—C18−115.02 (15)N6—C14—N4—N5−12.93 (17)
C22—C17—C18—C190.3 (2)N1—C6—N5—N43.8 (2)
C15—C17—C18—C19−179.33 (15)C2—C6—N5—N4−179.63 (15)
C17—C18—C19—C200.1 (3)C3—N4—N5—C6−35.42 (19)
C18—C19—C20—C210.0 (3)C14—N4—N5—C6161.14 (13)
C19—C20—C21—C22−0.5 (3)O1—C5—N3—C17.4 (2)
C20—C21—C22—C170.9 (3)N1—C5—N3—C1−169.98 (13)
C18—C17—C22—C21−0.7 (2)C8—C1—N3—C5−126.84 (15)
C15—C17—C22—C21178.87 (16)C7—C1—N3—C5109.70 (17)
N5—C6—N1—C5−167.49 (14)O2—C14—N6—C15−2.9 (2)
C2—C6—N1—C516.2 (2)N4—C14—N6—C15−178.49 (12)
N5—C6—N1—N231.4 (2)C17—C15—N6—C14−93.33 (15)
C2—C6—N1—N2−144.94 (16)C16—C15—N6—C14141.71 (14)
D—H···AD—HH···AD···AD—H···A
N6—H6···O1i0.862.443.2497 (15)158
N3—H3···O2ii0.862.543.2706 (16)144
C13—H13···O2ii0.932.573.4701 (17)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6⋯O1i0.862.443.2497 (15)158
N3—H3⋯O2ii0.862.543.2706 (16)144
C13—H13⋯O2ii0.932.573.4701 (17)163

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, X-ray crystallographic analysis, and antitumor activity of 1-acyl-3,6-disubstituted phenyl-1,4-dihydro-1,2,4,5-tetrazines.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2005-06-15       Impact factor: 2.823

3.  Synthesis, structure analysis, and antitumor activity of 3,6-disubstituted-1,4-dihydro-1,2,4,5-tetrazine derivatives.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-05-18       Impact factor: 2.823

4.  Synthesis and antitumor activity of s-tetrazine derivatives.

Authors:  Wei-Xiao Hu; Guo-Wu Rao; Ya-Quan Sun
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

  4 in total

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