Literature DB >> 22347024

(3R,4R,4aS,7aR,12bS)-3-Cyclo-propyl-methyl-4a,9-dihy-droxy-3-methyl-7-oxo-2,3,4,4a,5,6,7,7a-octa-hydro-1H-4,12-methano-benzofuro[3,2-e]isoquinolin-3-ium bromide.

Xiangfeng Chen, Zaiwei Zong, Youguo Du, Jianguo Li, Min Sun.   

Abstract

The title compound, C(21)H(26)NO(4) (+)·Br(-), also known as R-methyl-naltrexone (MNTX) bromide, is a selective peripher-ally acting μ-opioid receptor antagonist with a oroxymorphone skeleton, synthesized by hydroxyl protection, N-methyl-ation, deprotection and anion exchange of naltrexone. It comprises a five-ring system A/B/C/D/E. Rings C and E adopt distorted chair conformations, whereas ring D is in half-chair conformation. The C/E ring junctions are trans fused. The dihedral angle between rings D and E is 82.3 (1)°, while the dihedral angles between the planes of rings C and A, and rings D and E are respectively 81.7 (1), 75.9 (1) and 12.2 (1)°. In the crystal, mol-ecules are linked by O-H⋯Br hydrogen bonds.

Entities:  

Year:  2012        PMID: 22347024      PMCID: PMC3275079          DOI: 10.1107/S1600536812000645

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to methyl­naltrexone (MNTX) bromide, see: Garnock-Jones & McKeage (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For synthesis of methyl­naltrexone bromide via hydroxyl protection, N-methyl­ation, deprotection and anion exchange, see: Doshan et al. (2010 ▶).

Experimental

Crystal data

C21H26NO4Br M = 436.34 Monoclinic, a = 7.708 (3) Å b = 13.187 (5) Å c = 9.501 (3) Å β = 97.679 (6)° V = 957.1 (6) Å3 Z = 2 Mo Kα radiation μ = 2.18 mm−1 T = 291 K 0.28 × 0.24 × 0.22 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.581, T max = 0.646 6955 measured reflections 4179 independent reflections 3259 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.073 S = 1.04 4179 reflections 245 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.44 e Å−3 Absolute structure: Flack (1983 ▶), 1636 Friedel pairs Flack parameter: −0.006 (7) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000645/bg2437sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000645/bg2437Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H26NO4+·BrF(000) = 452
Mr = 436.34Dx = 1.514 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2706 reflections
a = 7.708 (3) Åθ = 2.3–24.6°
b = 13.187 (5) ŵ = 2.18 mm1
c = 9.501 (3) ÅT = 291 K
β = 97.679 (6)°Block, colourless
V = 957.1 (6) Å30.28 × 0.24 × 0.22 mm
Z = 2
Bruker SMART APEX CCD diffractometer4179 independent reflections
Radiation source: sealed tube3259 reflections with I > 2σ(I)
graphiteRint = 0.048
phi and ω scansθmax = 28.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→10
Tmin = 0.581, Tmax = 0.646k = −12→17
6955 measured reflectionsl = −12→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.073w = 1/[σ2(Fo2) + (0.020P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4179 reflectionsΔρmax = 0.39 e Å3
245 parametersΔρmin = −0.44 e Å3
2 restraintsAbsolute structure: Flack (1983), 1636 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.006 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.27040 (4)0.31792 (5)0.03917 (3)0.05094 (11)
C10.5410 (4)0.4248 (3)0.5393 (4)0.0436 (9)
C20.5975 (4)0.4559 (3)0.6764 (4)0.0506 (10)
C30.4825 (5)0.5137 (3)0.7423 (4)0.0519 (10)
H30.51920.53750.83360.062*
C40.3139 (5)0.5383 (3)0.6787 (3)0.0464 (9)
H40.23890.57480.72870.056*
C50.2590 (4)0.5076 (3)0.5394 (3)0.0392 (8)
C60.3776 (4)0.4540 (3)0.4748 (3)0.0372 (8)
C70.3529 (4)0.4120 (3)0.3254 (3)0.0358 (8)
C80.1586 (4)0.3871 (3)0.2814 (3)0.0330 (7)
C90.0565 (4)0.4882 (3)0.3026 (3)0.0320 (7)
H9−0.06760.47450.27100.038*
C100.0725 (4)0.5145 (2)0.4634 (3)0.0405 (8)
H10A0.02920.58280.47370.049*
H10B−0.00130.46870.50880.049*
C110.4099 (4)0.4890 (3)0.2210 (3)0.0425 (9)
H11A0.53420.50210.24440.051*
H11B0.39010.46110.12570.051*
C120.3096 (4)0.5877 (3)0.2249 (3)0.0398 (8)
H12A0.33970.63160.14990.048*
H12B0.34680.62130.31470.048*
C130.0381 (4)0.67932 (19)0.2407 (3)0.0406 (8)
H13A0.09290.70080.33380.049*
H13B0.06940.72800.17190.049*
C14−0.1571 (4)0.6804 (3)0.2385 (3)0.0432 (8)
H14−0.20580.63470.30450.052*
C15−0.2726 (5)0.7068 (3)0.1044 (4)0.0565 (11)
H15A−0.21760.71620.01920.068*
H15B−0.38810.67640.08870.068*
C16−0.2390 (5)0.7841 (3)0.2174 (4)0.058
H16A−0.33380.80060.27100.070*
H16B−0.16320.84050.20150.070*
C170.0470 (4)0.5559 (3)0.0514 (3)0.0395 (8)
H17A0.06180.6163−0.00200.059*
H17B−0.07470.53770.04040.059*
H17C0.11320.50160.01730.059*
C180.4825 (3)0.3216 (4)0.3524 (3)0.0451 (7)
H180.52660.30140.26450.054*
C190.3966 (5)0.2325 (3)0.4176 (4)0.0465 (9)
C200.2143 (5)0.2074 (3)0.3494 (4)0.0488 (9)
H20A0.17080.14840.39460.059*
H20B0.21410.19270.24940.059*
C210.0982 (4)0.2997 (3)0.3677 (3)0.0398 (9)
H21A−0.02320.28360.33470.048*
H21B0.10780.31840.46710.048*
N10.1112 (3)0.5747 (2)0.2073 (3)0.0335 (6)
O10.7622 (3)0.4286 (3)0.7404 (3)0.0719 (10)
H1X0.762 (6)0.403 (4)0.817 (5)0.086*
O20.6235 (3)0.3609 (2)0.4553 (2)0.0548 (8)
O30.4644 (4)0.1902 (2)0.5242 (3)0.0638 (9)
O40.1381 (3)0.35700 (17)0.1374 (2)0.0393 (6)
H4X0.037 (4)0.344 (3)0.108 (3)0.047*
U11U22U33U12U13U23
Br10.04321 (15)0.0671 (2)0.04230 (17)−0.0020 (2)0.00507 (11)−0.0091 (2)
C10.0374 (18)0.051 (3)0.040 (2)0.0021 (17)−0.0021 (15)0.0060 (17)
C20.0402 (18)0.064 (3)0.044 (2)−0.0095 (18)−0.0098 (15)0.0156 (18)
C30.061 (2)0.061 (3)0.0297 (18)−0.021 (2)−0.0071 (16)0.0019 (17)
C40.061 (2)0.046 (2)0.0322 (18)−0.0040 (18)0.0057 (15)0.0002 (16)
C50.0437 (18)0.044 (2)0.0299 (16)−0.0031 (16)0.0036 (13)0.0046 (15)
C60.0340 (17)0.048 (2)0.0286 (17)−0.0016 (16)0.0022 (13)0.0085 (16)
C70.0337 (16)0.046 (2)0.0284 (16)0.0083 (14)0.0059 (12)0.0059 (15)
C80.0318 (15)0.041 (2)0.0260 (15)0.0057 (14)0.0041 (12)0.0001 (14)
C90.0282 (14)0.040 (2)0.0283 (15)0.0008 (13)0.0045 (12)0.0048 (14)
C100.0440 (18)0.048 (2)0.0305 (16)0.0079 (16)0.0079 (13)−0.0009 (15)
C110.0295 (15)0.058 (3)0.0409 (18)0.0000 (16)0.0082 (13)0.0117 (17)
C120.0274 (15)0.050 (2)0.0413 (18)−0.0081 (15)0.0020 (13)0.0094 (16)
C130.0469 (18)0.033 (2)0.0417 (17)0.0000 (16)0.0036 (14)−0.0012 (15)
C140.0475 (19)0.042 (2)0.0420 (18)0.0075 (16)0.0127 (15)0.0091 (16)
C150.050 (2)0.072 (3)0.047 (2)0.011 (2)0.0065 (16)0.022 (2)
C160.0620.0520.0660.0290.0310.019
C170.0460 (19)0.045 (2)0.0257 (16)0.0010 (16)−0.0012 (13)0.0055 (15)
C180.0359 (14)0.064 (2)0.0348 (14)0.016 (2)0.0037 (11)0.008 (2)
C190.056 (2)0.048 (3)0.0360 (19)0.0243 (19)0.0088 (16)0.0002 (18)
C200.062 (2)0.039 (2)0.047 (2)0.0038 (19)0.0162 (18)0.0040 (17)
C210.0403 (15)0.042 (3)0.0380 (15)0.0039 (16)0.0074 (12)0.0049 (16)
N10.0306 (12)0.0356 (17)0.0337 (14)−0.0007 (12)0.0020 (10)0.0028 (12)
O10.0516 (15)0.105 (3)0.0531 (16)−0.0082 (16)−0.0165 (13)0.0250 (17)
O20.0337 (11)0.083 (2)0.0459 (13)0.0126 (12)−0.0002 (10)0.0088 (12)
O30.081 (2)0.059 (2)0.0489 (16)0.0221 (18)−0.0009 (15)0.0115 (15)
O40.0431 (11)0.0443 (17)0.0300 (11)0.0049 (10)0.0029 (9)−0.0029 (9)
C1—O21.374 (4)C13—C141.502 (5)
C1—C21.379 (5)C13—N11.539 (4)
C1—C61.380 (4)C13—H13A0.9700
C2—O11.380 (4)C13—H13B0.9700
C2—C31.381 (5)C14—C151.495 (4)
C3—C41.396 (5)C14—C161.508 (5)
C3—H30.9300C14—H140.9800
C4—C51.395 (4)C15—C161.478 (6)
C4—H40.9300C15—H15A0.9700
C5—C61.364 (5)C15—H15B0.9700
C5—C101.524 (4)C16—H16A0.9700
C6—C71.512 (4)C16—H16B0.9700
C7—C111.524 (5)C17—N11.518 (4)
C7—C81.536 (4)C17—H17A0.9600
C7—C181.555 (5)C17—H17B0.9600
C8—O41.413 (3)C17—H17C0.9600
C8—C211.523 (5)C18—O21.457 (4)
C8—C91.575 (4)C18—C191.520 (6)
C9—N11.549 (4)C18—H180.9800
C9—C101.555 (4)C19—O31.212 (4)
C9—H90.9800C19—C201.504 (5)
C10—H10A0.9700C20—C211.534 (5)
C10—H10B0.9700C20—H20A0.9700
C11—C121.517 (5)C20—H20B0.9700
C11—H11A0.9700C21—H21A0.9700
C11—H11B0.9700C21—H21B0.9700
C12—N11.526 (4)O1—H1X0.80 (5)
C12—H12A0.9700O4—H4X0.82 (3)
C12—H12B0.9700
O2—C1—C2128.2 (3)C14—C13—H13B108.9
O2—C1—C6112.3 (3)N1—C13—H13B108.9
C2—C1—C6119.4 (4)H13A—C13—H13B107.7
C1—C2—O1119.6 (4)C15—C14—C13119.7 (3)
C1—C2—C3116.8 (3)C15—C14—C1659.0 (2)
O1—C2—C3123.6 (3)C13—C14—C16114.3 (3)
C2—C3—C4123.3 (3)C15—C14—H14117.0
C2—C3—H3118.4C13—C14—H14117.0
C4—C3—H3118.4C16—C14—H14117.0
C5—C4—C3119.3 (3)C16—C15—C1461.0 (2)
C5—C4—H4120.3C16—C15—H15A117.7
C3—C4—H4120.3C14—C15—H15A117.7
C6—C5—C4116.2 (3)C16—C15—H15B117.7
C6—C5—C10117.7 (3)C14—C15—H15B117.7
C4—C5—C10125.4 (3)H15A—C15—H15B114.8
C5—C6—C1124.8 (3)C15—C16—C1460.1 (2)
C5—C6—C7127.2 (3)C15—C16—H16A117.8
C1—C6—C7107.9 (3)C14—C16—H16A117.8
C6—C7—C11110.9 (3)C15—C16—H16B117.8
C6—C7—C8109.2 (2)C14—C16—H16B117.8
C11—C7—C8108.7 (2)H16A—C16—H16B114.9
C6—C7—C1897.4 (2)N1—C17—H17A109.5
C11—C7—C18112.5 (3)N1—C17—H17B109.5
C8—C7—C18117.5 (3)H17A—C17—H17B109.5
O4—C8—C21107.8 (3)N1—C17—H17C109.5
O4—C8—C7107.6 (2)H17A—C17—H17C109.5
C21—C8—C7111.9 (2)H17B—C17—H17C109.5
O4—C8—C9111.6 (2)O2—C18—C19109.1 (2)
C21—C8—C9112.2 (2)O2—C18—C7104.1 (4)
C7—C8—C9105.6 (3)C19—C18—C7110.8 (2)
N1—C9—C10114.7 (3)O2—C18—H18110.9
N1—C9—C8111.7 (2)C19—C18—H18110.9
C10—C9—C8109.8 (2)C7—C18—H18110.9
N1—C9—H9106.7O3—C19—C20122.1 (4)
C10—C9—H9106.7O3—C19—C18122.3 (3)
C8—C9—H9106.7C20—C19—C18115.3 (3)
C5—C10—C9113.5 (2)C19—C20—C21107.6 (3)
C5—C10—H10A108.9C19—C20—H20A110.2
C9—C10—H10A108.9C21—C20—H20A110.2
C5—C10—H10B108.9C19—C20—H20B110.2
C9—C10—H10B108.9C21—C20—H20B110.2
H10A—C10—H10B107.7H20A—C20—H20B108.5
C12—C11—C7111.3 (3)C8—C21—C20108.3 (3)
C12—C11—H11A109.4C8—C21—H21A110.0
C7—C11—H11A109.4C20—C21—H21A110.0
C12—C11—H11B109.4C8—C21—H21B110.0
C7—C11—H11B109.4C20—C21—H21B110.0
H11A—C11—H11B108.0H21A—C21—H21B108.4
C11—C12—N1114.0 (3)C17—N1—C12108.4 (2)
C11—C12—H12A108.7C17—N1—C13105.5 (2)
N1—C12—H12A108.7C12—N1—C13105.4 (2)
C11—C12—H12B108.7C17—N1—C9111.8 (2)
N1—C12—H12B108.7C12—N1—C9111.5 (2)
H12A—C12—H12B107.6C13—N1—C9113.8 (2)
C14—C13—N1113.5 (3)C2—O1—H1X114 (3)
C14—C13—H13A108.9C1—O2—C18104.3 (2)
N1—C13—H13A108.9C8—O4—H4X112 (2)
O2—C1—C2—O15.5 (6)C8—C9—C10—C547.6 (3)
C6—C1—C2—O1−178.7 (4)C6—C7—C11—C12−57.6 (3)
O2—C1—C2—C3−174.4 (4)C8—C7—C11—C1262.5 (3)
C6—C1—C2—C31.3 (6)C18—C7—C11—C12−165.5 (3)
C1—C2—C3—C42.1 (6)C7—C11—C12—N1−52.0 (4)
O1—C2—C3—C4−177.8 (4)N1—C13—C14—C15−92.0 (4)
C2—C3—C4—C5−3.0 (6)N1—C13—C14—C16−158.8 (2)
C3—C4—C5—C60.3 (5)C13—C14—C15—C16−102.1 (4)
C3—C4—C5—C10170.4 (3)C13—C14—C16—C15111.3 (3)
C4—C5—C6—C13.3 (6)C6—C7—C18—O2−35.8 (3)
C10—C5—C6—C1−167.6 (4)C11—C7—C18—O280.5 (3)
C4—C5—C6—C7−179.8 (3)C8—C7—C18—O2−152.0 (2)
C10—C5—C6—C79.3 (5)C6—C7—C18—C1981.4 (3)
O2—C1—C6—C5172.2 (4)C11—C7—C18—C19−162.3 (3)
C2—C1—C6—C5−4.2 (6)C8—C7—C18—C19−34.8 (4)
O2—C1—C6—C7−5.2 (4)O2—C18—C19—O3−14.9 (5)
C2—C1—C6—C7178.4 (3)C7—C18—C19—O3−129.0 (3)
C5—C6—C7—C1190.1 (4)O2—C18—C19—C20159.1 (3)
C1—C6—C7—C11−92.6 (4)C7—C18—C19—C2045.1 (4)
C5—C6—C7—C8−29.7 (5)O3—C19—C20—C21112.0 (4)
C1—C6—C7—C8147.6 (3)C18—C19—C20—C21−62.0 (4)
C5—C6—C7—C18−152.3 (4)O4—C8—C21—C2061.1 (3)
C1—C6—C7—C1825.1 (4)C7—C8—C21—C20−57.1 (3)
C6—C7—C8—O4174.7 (3)C9—C8—C21—C20−175.6 (2)
C11—C7—C8—O453.6 (4)C19—C20—C21—C866.2 (3)
C18—C7—C8—O4−75.7 (3)C11—C12—N1—C17−77.1 (3)
C6—C7—C8—C21−67.0 (4)C11—C12—N1—C13170.2 (2)
C11—C7—C8—C21171.8 (3)C11—C12—N1—C946.3 (3)
C18—C7—C8—C2142.6 (3)C14—C13—N1—C1769.2 (3)
C6—C7—C8—C955.4 (3)C14—C13—N1—C12−176.2 (2)
C11—C7—C8—C9−65.7 (3)C14—C13—N1—C9−53.7 (3)
C18—C7—C8—C9165.0 (2)C10—C9—N1—C17−164.4 (2)
O4—C8—C9—N1−55.3 (3)C8—C9—N1—C1769.9 (3)
C21—C8—C9—N1−176.5 (2)C10—C9—N1—C1274.1 (3)
C7—C8—C9—N161.3 (3)C8—C9—N1—C12−51.7 (3)
O4—C8—C9—C10176.3 (2)C10—C9—N1—C13−45.0 (3)
C21—C8—C9—C1055.1 (3)C8—C9—N1—C13−170.7 (2)
C7—C8—C9—C10−67.1 (3)C2—C1—O2—C18156.9 (4)
C6—C5—C10—C9−18.0 (4)C6—C1—O2—C18−19.2 (4)
C4—C5—C10—C9172.1 (3)C19—C18—O2—C1−83.5 (3)
N1—C9—C10—C5−79.1 (3)C7—C18—O2—C134.8 (3)
D—H···A
—···
—···
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1X⋯Br1i0.80 (5)2.43 (5)3.231 (3)174 (5)
O4—H4X⋯Br10.81 (3)2.40 (3)3.204 (3)174 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Methylnaltrexone.

Authors:  Karly P Garnock-Jones; Kate McKeage
Journal:  Drugs       Date:  2010-05-07       Impact factor: 9.546

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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