Literature DB >> 22347019

2-(5-Cyclo-hexyl-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Hong Dae Choi, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C(19)H(24)O(3)S, the cylohexyl ring adopts a chair conformation. In the crystal, molecules are linked via pairs of O-H⋯O hydrogen bonds, forming inversion dimers. These dimers are further stabilized by weak inter-molecular C-H⋯π inter-actions, and by slipped π-π inter-actions between the furan rings of adjacent mol-ecules [centroid-centroid distance = 3.557 (2) Å, inter-planar distance = 3.301 (2) Å and slippage = 1.325 (2) Å].

Entities:  

Year:  2012        PMID: 22347019      PMCID: PMC3275074          DOI: 10.1107/S1600536811055152

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the crystal structure of related compound, see: Seo et al. (2011 ▶).

Experimental

Crystal data

C19H24O3S M = 332.44 Triclinic, a = 9.1261 (2) Å b = 9.5308 (2) Å c = 10.5577 (2) Å α = 72.228 (1)° β = 79.702 (1)° γ = 85.724 (1)° V = 860.19 (3) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 173 K 0.36 × 0.27 × 0.23 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.931, T max = 0.955 16313 measured reflections 4297 independent reflections 3683 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.05 4297 reflections 214 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055152/ff2049sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055152/ff2049Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055152/ff2049Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24O3SZ = 2
Mr = 332.44F(000) = 356
Triclinic, P1Dx = 1.284 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.1261 (2) ÅCell parameters from 6099 reflections
b = 9.5308 (2) Åθ = 2.6–28.4°
c = 10.5577 (2) ŵ = 0.20 mm1
α = 72.228 (1)°T = 173 K
β = 79.702 (1)°Block, colourless
γ = 85.724 (1)°0.36 × 0.27 × 0.23 mm
V = 860.19 (3) Å3
Bruker SMART APEXII CCD diffractometer4297 independent reflections
Radiation source: rotating anode3683 reflections with I > 2σ(I)
graphite multilayerRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.1°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −12→12
Tmin = 0.931, Tmax = 0.955l = −14→14
16313 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: difference Fourier map
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0473P)2 + 0.2514P] where P = (Fo2 + 2Fc2)/3
4297 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.77443 (3)0.08125 (4)0.20862 (3)0.02569 (10)
O10.41530 (10)−0.09376 (9)0.16072 (9)0.02482 (19)
O20.49565 (11)−0.32309 (10)0.42671 (10)0.0303 (2)
O30.62246 (13)−0.48943 (11)0.33781 (12)0.0398 (3)
H3O0.583 (2)−0.549 (2)0.414 (2)0.063 (6)*
C30.43798 (13)0.27862 (13)0.16349 (12)0.0225 (2)
H30.51250.33950.16970.027*
C10.60123 (13)0.03588 (13)0.18486 (12)0.0219 (2)
C20.47208 (13)0.13333 (13)0.16428 (12)0.0211 (2)
C40.29330 (13)0.33348 (13)0.15341 (12)0.0226 (2)
C50.18669 (14)0.24291 (14)0.13832 (13)0.0252 (3)
H50.08910.28210.12880.030*
C60.21845 (14)0.09865 (14)0.13680 (13)0.0253 (3)
H60.14580.03870.12600.030*
C70.36164 (14)0.04727 (13)0.15196 (12)0.0219 (2)
C80.55972 (13)−0.09689 (14)0.18353 (12)0.0236 (3)
C90.24973 (13)0.48216 (13)0.17527 (13)0.0230 (2)
H90.34080.54370.14510.028*
C100.20154 (14)0.45933 (14)0.32704 (13)0.0262 (3)
H10A0.11630.39200.36070.031*
H10B0.28470.41190.37470.031*
C110.15678 (15)0.60348 (15)0.35951 (14)0.0289 (3)
H11A0.11910.58210.45730.035*
H11B0.24540.66570.33740.035*
C120.03734 (15)0.68695 (15)0.28067 (15)0.0316 (3)
H12A0.01540.78280.29920.038*
H12B−0.05530.62970.31000.038*
C130.08862 (16)0.71312 (14)0.13001 (14)0.0303 (3)
H13A0.17670.77690.09950.036*
H13B0.00830.76490.08040.036*
C140.12848 (16)0.56783 (14)0.09797 (14)0.0289 (3)
H14A0.16370.5882−0.00010.035*
H14B0.03840.50720.12230.035*
C150.63734 (15)−0.24245 (14)0.20305 (14)0.0274 (3)
H15A0.7446−0.22990.20070.033*
H15B0.6281−0.28040.12740.033*
C160.57635 (14)−0.35434 (13)0.33429 (13)0.0247 (3)
C170.73084 (15)0.08854 (16)0.38308 (14)0.0292 (3)
H170.63580.14630.39370.035*
C180.7115 (2)−0.06369 (19)0.48197 (15)0.0445 (4)
H18A0.8041−0.12150.47270.067*
H18B0.6303−0.11240.46350.067*
H18C0.6876−0.05620.57400.067*
C190.85552 (19)0.1697 (2)0.40621 (18)0.0453 (4)
H19A0.83770.17200.49990.068*
H19B0.85880.27070.34530.068*
H19C0.95070.11880.38840.068*
U11U22U33U12U13U23
S10.02160 (15)0.02993 (17)0.02262 (16)−0.00101 (11)−0.00132 (11)−0.00472 (13)
O10.0289 (4)0.0194 (4)0.0266 (5)0.0012 (3)−0.0066 (4)−0.0067 (4)
O20.0376 (5)0.0218 (4)0.0271 (5)0.0013 (4)0.0008 (4)−0.0046 (4)
O30.0553 (7)0.0199 (5)0.0346 (6)0.0067 (4)0.0054 (5)−0.0031 (4)
C30.0246 (6)0.0209 (6)0.0220 (6)−0.0014 (4)−0.0042 (5)−0.0061 (5)
C10.0229 (5)0.0227 (6)0.0177 (5)0.0006 (4)−0.0021 (4)−0.0034 (5)
C20.0234 (5)0.0223 (6)0.0164 (5)−0.0001 (4)−0.0029 (4)−0.0043 (5)
C40.0263 (6)0.0207 (5)0.0201 (6)0.0006 (4)−0.0032 (5)−0.0057 (5)
C50.0236 (6)0.0256 (6)0.0275 (6)0.0021 (4)−0.0060 (5)−0.0092 (5)
C60.0269 (6)0.0241 (6)0.0266 (6)−0.0018 (5)−0.0069 (5)−0.0084 (5)
C70.0277 (6)0.0190 (5)0.0188 (5)0.0007 (4)−0.0041 (5)−0.0053 (5)
C80.0256 (6)0.0235 (6)0.0188 (6)0.0020 (4)−0.0023 (5)−0.0034 (5)
C90.0249 (6)0.0198 (5)0.0253 (6)0.0008 (4)−0.0051 (5)−0.0078 (5)
C100.0309 (6)0.0239 (6)0.0252 (6)0.0040 (5)−0.0092 (5)−0.0077 (5)
C110.0343 (7)0.0277 (6)0.0271 (7)0.0024 (5)−0.0063 (5)−0.0116 (6)
C120.0324 (7)0.0275 (6)0.0345 (7)0.0068 (5)−0.0042 (6)−0.0111 (6)
C130.0365 (7)0.0225 (6)0.0313 (7)0.0070 (5)−0.0105 (6)−0.0060 (5)
C140.0375 (7)0.0241 (6)0.0267 (6)0.0049 (5)−0.0120 (5)−0.0072 (5)
C150.0307 (6)0.0216 (6)0.0260 (6)0.0036 (5)−0.0015 (5)−0.0040 (5)
C160.0255 (6)0.0206 (6)0.0273 (6)0.0018 (4)−0.0071 (5)−0.0049 (5)
C170.0280 (6)0.0347 (7)0.0277 (7)−0.0011 (5)−0.0017 (5)−0.0148 (6)
C180.0580 (10)0.0496 (9)0.0229 (7)−0.0175 (8)−0.0037 (7)−0.0045 (7)
C190.0461 (9)0.0517 (10)0.0461 (9)−0.0131 (7)−0.0070 (7)−0.0239 (8)
S1—C11.7488 (12)C10—H10B0.9900
S1—C171.8351 (14)C11—C121.5182 (18)
O1—C71.3774 (14)C11—H11A0.9900
O1—C81.3781 (14)C11—H11B0.9900
O2—C161.2128 (16)C12—C131.523 (2)
O3—C161.3160 (15)C12—H12A0.9900
O3—H3O0.87 (2)C12—H12B0.9900
C3—C41.3934 (16)C13—C141.5268 (18)
C3—C21.3942 (17)C13—H13A0.9900
C3—H30.9500C13—H13B0.9900
C1—C81.3525 (17)C14—H14A0.9900
C1—C21.4505 (16)C14—H14B0.9900
C2—C71.3932 (17)C15—C161.5092 (18)
C4—C51.4077 (17)C15—H15A0.9900
C4—C91.5173 (16)C15—H15B0.9900
C5—C61.3882 (17)C17—C181.508 (2)
C5—H50.9500C17—C191.5160 (19)
C6—C71.3800 (17)C17—H171.0000
C6—H60.9500C18—H18A0.9800
C8—C151.4832 (17)C18—H18B0.9800
C9—C141.5292 (17)C18—H18C0.9800
C9—C101.5355 (18)C19—H19A0.9800
C9—H91.0000C19—H19B0.9800
C10—C111.5250 (18)C19—H19C0.9800
C10—H10A0.9900
C1—S1—C17100.95 (6)C11—C12—C13110.51 (11)
C7—O1—C8105.84 (9)C11—C12—H12A109.5
C16—O3—H3O108.6 (14)C13—C12—H12A109.5
C4—C3—C2119.24 (11)C11—C12—H12B109.5
C4—C3—H3120.4C13—C12—H12B109.5
C2—C3—H3120.4H12A—C12—H12B108.1
C8—C1—C2106.07 (11)C12—C13—C14111.07 (11)
C8—C1—S1127.22 (10)C12—C13—H13A109.4
C2—C1—S1126.70 (9)C14—C13—H13A109.4
C7—C2—C3119.29 (11)C12—C13—H13B109.4
C7—C2—C1105.52 (11)C14—C13—H13B109.4
C3—C2—C1135.04 (11)H13A—C13—H13B108.0
C3—C4—C5119.17 (11)C13—C14—C9111.25 (11)
C3—C4—C9119.17 (11)C13—C14—H14A109.4
C5—C4—C9121.27 (11)C9—C14—H14A109.4
C6—C5—C4122.64 (11)C13—C14—H14B109.4
C6—C5—H5118.7C9—C14—H14B109.4
C4—C5—H5118.7H14A—C14—H14B108.0
C7—C6—C5116.17 (11)C8—C15—C16112.95 (11)
C7—C6—H6121.9C8—C15—H15A109.0
C5—C6—H6121.9C16—C15—H15A109.0
O1—C7—C6126.11 (11)C8—C15—H15B109.0
O1—C7—C2110.44 (10)C16—C15—H15B109.0
C6—C7—C2123.43 (11)H15A—C15—H15B107.8
C1—C8—O1112.09 (11)O2—C16—O3123.83 (12)
C1—C8—C15132.97 (12)O2—C16—C15123.84 (11)
O1—C8—C15114.94 (11)O3—C16—C15112.32 (11)
C4—C9—C14115.11 (10)C18—C17—C19112.04 (13)
C4—C9—C10108.57 (10)C18—C17—S1111.38 (10)
C14—C9—C10110.10 (10)C19—C17—S1107.38 (10)
C4—C9—H9107.6C18—C17—H17108.6
C14—C9—H9107.6C19—C17—H17108.6
C10—C9—H9107.6S1—C17—H17108.6
C11—C10—C9112.52 (10)C17—C18—H18A109.5
C11—C10—H10A109.1C17—C18—H18B109.5
C9—C10—H10A109.1H18A—C18—H18B109.5
C11—C10—H10B109.1C17—C18—H18C109.5
C9—C10—H10B109.1H18A—C18—H18C109.5
H10A—C10—H10B107.8H18B—C18—H18C109.5
C12—C11—C10111.41 (11)C17—C19—H19A109.5
C12—C11—H11A109.3C17—C19—H19B109.5
C10—C11—H11A109.3H19A—C19—H19B109.5
C12—C11—H11B109.3C17—C19—H19C109.5
C10—C11—H11B109.3H19A—C19—H19C109.5
H11A—C11—H11B108.0H19B—C19—H19C109.5
C17—S1—C1—C8−104.25 (12)C2—C1—C8—C15−177.78 (13)
C17—S1—C1—C274.88 (12)S1—C1—C8—C151.5 (2)
C4—C3—C2—C71.42 (18)C7—O1—C8—C1−2.16 (14)
C4—C3—C2—C1−173.37 (13)C7—O1—C8—C15177.18 (10)
C8—C1—C2—C7−0.07 (14)C3—C4—C9—C14150.58 (12)
S1—C1—C2—C7−179.35 (9)C5—C4—C9—C14−36.65 (16)
C8—C1—C2—C3175.22 (13)C3—C4—C9—C10−85.52 (13)
S1—C1—C2—C3−4.1 (2)C5—C4—C9—C1087.25 (14)
C2—C3—C4—C5−2.77 (18)C4—C9—C10—C11179.46 (10)
C2—C3—C4—C9170.16 (11)C14—C9—C10—C11−53.70 (14)
C3—C4—C5—C61.88 (19)C9—C10—C11—C1254.49 (14)
C9—C4—C5—C6−170.89 (12)C10—C11—C12—C13−55.52 (15)
C4—C5—C6—C70.42 (19)C11—C12—C13—C1457.35 (15)
C8—O1—C7—C6−176.30 (12)C12—C13—C14—C9−57.68 (15)
C8—O1—C7—C22.07 (13)C4—C9—C14—C13178.08 (11)
C5—C6—C7—O1176.30 (11)C10—C9—C14—C1354.99 (14)
C5—C6—C7—C2−1.87 (19)C1—C8—C15—C16109.45 (16)
C3—C2—C7—O1−177.44 (10)O1—C8—C15—C16−69.71 (14)
C1—C2—C7—O1−1.26 (14)C8—C15—C16—O2−14.72 (18)
C3—C2—C7—C60.98 (19)C8—C15—C16—O3166.22 (11)
C1—C2—C7—C6177.17 (12)C1—S1—C17—C1873.38 (11)
C2—C1—C8—O11.39 (14)C1—S1—C17—C19−163.61 (11)
S1—C1—C8—O1−179.34 (9)
Cg1 is the centroid of the C2–C7 benzene ring.
D—H···AD—HH···AD···AD—H···A
O3—H3O···O2i0.87 (2)1.81 (2)2.6745 (14)179 (2)
C15—H15B···Cg1ii0.992.773.578 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O2i0.87 (2)1.81 (2)2.6745 (14)179 (2)
C15—H15BCg1ii0.992.773.578 (2)140

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

7.  2-(5-Cyclo-hexyl-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09
  7 in total

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