Literature DB >> 22347012

3-Fluoro-12H-benzimidazo[2,1-b][1,3]benzothia-zin-12-one.

Zhiming Wang, Bin Yu, Xiuqin Zhang, Yuan Cui, Xiaoqiang Sun.   

Abstract

In the title compound, C(14)H(7)FN(2)OS, prepared by the reaction of 2-bromo-4-fluoro-benzoyl choride with 2-mercaptobenzimidazole, the four-membered fused-ring system is essentially planar [maximum deviation from the mean plane = 0.035 (2) Å]. The crystal packing is stabilized by weak inter-molecular π-π [minimum ring centroid-centroid separation = 3.509 (7) Å], weak C-F⋯π [F⋯centroid = 3.4464 (17) Å, C-F⋯centroid = 97.72 (11)°] and C-O⋯π [O⋯centroid = 3.5230 (16) and 3.7296 (17) Å, C-O⋯centroid = 86.40 (10) and 86.25 (10)°] inter-actions and weak inter-molecular C-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22347012      PMCID: PMC3275067          DOI: 10.1107/S1600536811054948

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to spiranes, see: Dawood & Abdel-Wahab (2010 ▶); Dolbier et al. (1994 ▶); Mavrova et al. (2010 ▶); Sekar et al. (2011 ▶).

Experimental

Crystal data

C14H7FN2OS M = 270.28 Monoclinic, a = 9.5027 (12) Å b = 7.0759 (9) Å c = 16.931 (2) Å β = 94.375 (3)° V = 1135.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.944, T max = 0.958 5987 measured reflections 1989 independent reflections 1772 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.106 S = 1.00 1989 reflections 172 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054948/ds2160sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054948/ds2160Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054948/ds2160Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H7FN2OSF(000) = 552
Mr = 270.28Dx = 1.582 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3848 reflections
a = 9.5027 (12) Åθ = 2.4–29.8°
b = 7.0759 (9) ŵ = 0.29 mm1
c = 16.931 (2) ÅT = 293 K
β = 94.375 (3)°Block, colourless
V = 1135.1 (2) Å30.20 × 0.18 × 0.15 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1989 independent reflections
Radiation source: fine-focus sealed tube1772 reflections with I > 2σ(I)
graphiteRint = 0.031
phi and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→11
Tmin = 0.944, Tmax = 0.958k = −8→8
5987 measured reflectionsl = −20→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0611P)2 + 0.4006P] where P = (Fo2 + 2Fc2)/3
1989 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.14487 (5)0.16939 (8)0.36622 (3)0.0538 (2)
F1−0.43167 (13)0.1082 (2)0.59933 (8)0.0691 (4)
O10.19345 (15)0.3338 (2)0.54945 (8)0.0550 (4)
N10.08266 (18)0.2319 (2)0.28889 (9)0.0512 (4)
N20.12490 (15)0.2778 (2)0.42060 (8)0.0386 (3)
C10.4856 (2)0.4053 (3)0.36667 (13)0.0549 (5)
H10.57420.44780.38600.066*
C20.3838 (2)0.3749 (3)0.41907 (12)0.0478 (4)
H20.40240.39290.47330.057*
C30.2520 (2)0.3161 (2)0.38695 (11)0.0409 (4)
C40.2239 (2)0.2870 (3)0.30570 (11)0.0458 (4)
C50.3284 (2)0.3134 (3)0.25403 (12)0.0570 (5)
H50.31120.29140.20000.068*
C60.4596 (2)0.3741 (3)0.28586 (13)0.0600 (5)
H60.53140.39420.25250.072*
C70.0288 (2)0.2291 (2)0.35679 (10)0.0429 (4)
C80.0987 (2)0.2875 (2)0.50112 (10)0.0404 (4)
C9−0.04393 (18)0.2395 (2)0.52280 (10)0.0387 (4)
C10−0.1557 (2)0.1855 (2)0.46872 (11)0.0420 (4)
C11−0.2867 (2)0.1387 (3)0.49526 (12)0.0474 (5)
H11−0.36090.09990.45990.057*
C12−0.3033 (2)0.1512 (3)0.57463 (12)0.0496 (5)
C13−0.1972 (2)0.2037 (3)0.62965 (12)0.0517 (5)
H13−0.21210.20900.68330.062*
C14−0.0687 (2)0.2480 (3)0.60323 (11)0.0446 (4)
H140.00430.28480.63970.054*
U11U22U33U12U13U23
S10.0482 (3)0.0744 (4)0.0365 (3)−0.0045 (2)−0.0113 (2)−0.0035 (2)
F10.0542 (7)0.0824 (9)0.0723 (8)−0.0065 (6)0.0150 (6)−0.0017 (7)
O10.0544 (8)0.0695 (9)0.0387 (7)−0.0113 (7)−0.0121 (6)−0.0058 (6)
N10.0585 (10)0.0611 (10)0.0325 (8)0.0036 (8)−0.0060 (7)0.0026 (7)
N20.0429 (8)0.0397 (8)0.0319 (7)0.0020 (6)−0.0068 (6)−0.0009 (6)
C10.0490 (11)0.0546 (11)0.0610 (12)0.0014 (9)0.0031 (9)0.0037 (9)
C20.0474 (10)0.0477 (10)0.0475 (10)0.0006 (8)−0.0014 (8)−0.0001 (8)
C30.0469 (10)0.0344 (8)0.0407 (9)0.0051 (7)−0.0021 (8)0.0031 (7)
C40.0537 (11)0.0430 (9)0.0399 (10)0.0074 (8)−0.0024 (8)0.0059 (8)
C50.0690 (14)0.0596 (12)0.0425 (11)0.0118 (10)0.0046 (10)0.0067 (9)
C60.0596 (13)0.0646 (13)0.0573 (13)0.0074 (10)0.0135 (10)0.0108 (10)
C70.0491 (10)0.0412 (9)0.0362 (9)0.0041 (8)−0.0105 (7)0.0007 (7)
C80.0480 (10)0.0377 (9)0.0341 (9)0.0022 (7)−0.0070 (7)−0.0009 (7)
C90.0448 (10)0.0336 (8)0.0365 (9)0.0050 (7)−0.0052 (7)0.0002 (7)
C100.0488 (10)0.0368 (9)0.0389 (9)0.0059 (7)−0.0066 (8)0.0012 (7)
C110.0431 (10)0.0449 (10)0.0525 (11)0.0021 (8)−0.0075 (8)0.0003 (8)
C120.0473 (11)0.0447 (10)0.0572 (12)0.0039 (8)0.0069 (9)0.0030 (8)
C130.0619 (12)0.0507 (11)0.0425 (10)0.0065 (9)0.0053 (9)−0.0003 (8)
C140.0507 (10)0.0443 (9)0.0378 (9)0.0050 (8)−0.0046 (8)−0.0012 (7)
S1—C71.723 (2)C4—C51.385 (3)
S1—C101.7501 (19)C5—C61.388 (3)
F1—C121.354 (2)C5—H50.9300
O1—C81.214 (2)C6—H60.9300
N1—C71.294 (2)C8—C91.471 (3)
N1—C41.406 (3)C9—C101.402 (2)
N2—C31.401 (2)C9—C141.401 (2)
N2—C71.403 (2)C10—C111.395 (3)
N2—C81.406 (2)C11—C121.368 (3)
C1—C21.378 (3)C11—H110.9300
C1—C61.389 (3)C12—C131.371 (3)
C1—H10.9300C13—C141.369 (3)
C2—C31.390 (3)C13—H130.9300
C2—H20.9300C14—H140.9300
C3—C41.397 (3)
C7—S1—C10101.85 (9)N1—C7—S1122.20 (14)
C7—N1—C4105.11 (16)N2—C7—S1124.09 (14)
C3—N2—C7105.38 (14)O1—C8—N2119.32 (17)
C3—N2—C8127.34 (15)O1—C8—C9122.96 (16)
C7—N2—C8127.28 (15)N2—C8—C9117.72 (15)
C2—C1—C6121.9 (2)C10—C9—C14118.16 (17)
C2—C1—H1119.1C10—C9—C8124.53 (16)
C6—C1—H1119.1C14—C9—C8117.31 (16)
C1—C2—C3116.76 (19)C11—C10—C9120.31 (17)
C1—C2—H2121.6C11—C10—S1115.18 (14)
C3—C2—H2121.6C9—C10—S1124.51 (15)
C2—C3—C4121.90 (18)C12—C11—C10118.25 (18)
C2—C3—N2132.68 (17)C12—C11—H11120.9
C4—C3—N2105.41 (16)C10—C11—H11120.9
C5—C4—C3120.66 (19)F1—C12—C13118.95 (18)
C5—C4—N1128.96 (19)F1—C12—C11117.57 (18)
C3—C4—N1110.38 (17)C13—C12—C11123.47 (19)
C4—C5—C6117.5 (2)C12—C13—C14117.93 (19)
C4—C5—H5121.2C12—C13—H13121.0
C6—C5—H5121.2C14—C13—H13121.0
C5—C6—C1121.2 (2)C13—C14—C9121.85 (18)
C5—C6—H6119.4C13—C14—H14119.1
C1—C6—H6119.4C9—C14—H14119.1
N1—C7—N2113.71 (17)
C6—C1—C2—C3−1.7 (3)C10—S1—C7—N2−0.75 (17)
C1—C2—C3—C40.7 (3)C3—N2—C8—O10.0 (3)
C1—C2—C3—N2−177.85 (18)C7—N2—C8—O1−179.37 (17)
C7—N2—C3—C2178.39 (19)C3—N2—C8—C9−179.66 (15)
C8—N2—C3—C2−1.1 (3)C7—N2—C8—C90.9 (2)
C7—N2—C3—C4−0.31 (18)O1—C8—C9—C10180.00 (17)
C8—N2—C3—C4−179.83 (15)N2—C8—C9—C10−0.3 (2)
C2—C3—C4—C51.0 (3)O1—C8—C9—C14−0.2 (3)
N2—C3—C4—C5179.83 (16)N2—C8—C9—C14179.46 (15)
C2—C3—C4—N1−178.82 (16)C14—C9—C10—C11−1.1 (2)
N2—C3—C4—N10.06 (19)C8—C9—C10—C11178.63 (16)
C7—N1—C4—C5−179.51 (19)C14—C9—C10—S1179.32 (13)
C7—N1—C4—C30.2 (2)C8—C9—C10—S1−0.9 (2)
C3—C4—C5—C6−1.6 (3)C7—S1—C10—C11−178.27 (13)
N1—C4—C5—C6178.15 (19)C7—S1—C10—C91.29 (17)
C4—C5—C6—C10.6 (3)C9—C10—C11—C121.5 (3)
C2—C1—C6—C51.0 (3)S1—C10—C11—C12−178.94 (14)
C4—N1—C7—N2−0.5 (2)C10—C11—C12—F1178.98 (16)
C4—N1—C7—S1179.82 (13)C10—C11—C12—C13−1.4 (3)
C3—N2—C7—N10.5 (2)F1—C12—C13—C14−179.48 (17)
C8—N2—C7—N1−179.97 (16)C11—C12—C13—C140.9 (3)
C3—N2—C7—S1−179.78 (13)C12—C13—C14—C9−0.5 (3)
C8—N2—C7—S1−0.3 (2)C10—C9—C14—C130.6 (3)
C10—S1—C7—N1178.93 (15)C8—C9—C14—C13−179.15 (16)
D—H···AD—HH···AD···AD—H···A
C14—H14···N1i0.932.583.359 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14⋯N1i0.932.583.359 (2)141

Symmetry code: (i) .

  2 in total

1.  Synthesis, antitrichinnellosis and antiprotozoal activity of some novel thieno[2,3-d]pyrimidin-4(3H)-ones containing benzimidazole ring.

Authors:  Anelia Ts Mavrova; Dimitar Vuchev; Kameliya Anichina; Nikolay Vassilev
Journal:  Eur J Med Chem       Date:  2010-09-25       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.