Literature DB >> 22347009

Methyl 2-(1a,4a-dimethyl-2,8-dioxo-2,3,4,4a,5,6,7,8-octa-hydro-1aH-1-oxacyclo-propa[d]naphthalen-7-yl)acrylate.

Mohamed Tebbaa, Ahmed Benharref, Jean Claude Daran, Fouad Mellouki, Moha Berraho.   

Abstract

The title compound, C(16)H(20)O(5), was synthesized from ilicic acid [2-(8-hy-droxy-4a,8-dimethyl-deca-hydro-naphthalen-2-yl)acrylic acid], which was isolated from the chloro-form extract of the aerial part of Inula viscose (L) Aiton [or Dittrichia viscosa- (L) Greuter]. The molecule is built up from two fused six-membered rings, the epoxidized six-membered ring adopts a half-chair conformation while the other ring displays a perfect chair conformation. The crystal structure features C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22347009      PMCID: PMC3275064          DOI: 10.1107/S1600536812000086

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal background to Inula Viscosa­ (L) Aiton [or Dittrichia Viscosa­ (L) Greuter], see: Shtacher & Kasshman (1970 ▶); Chiappini et al. (1982 ▶); Azoulay et al. (1986 ▶); Bohlman et al. (1977 ▶); Ceccherelli et al. (1988 ▶); Geissman & Toribio (1967 ▶) For the synthesis, see: Barrero et al. (2009 ▶); Tebbaa et al. (2011 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H20O5 M = 292.32 Orthorhombic, a = 8.8626 (3) Å b = 9.4552 (3) Å c = 17.4080 (5) Å V = 1458.75 (8) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 180 K 0.45 × 0.33 × 0.12 mm

Data collection

Oxford Diffraction Xcalibur Sapphire1 long nozzle diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.650, T max = 1.000 33985 measured reflections 1716 independent reflections 1638 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.075 S = 1.06 1716 reflections 193 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000086/bt5772sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000086/bt5772Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000086/bt5772Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20O5F(000) = 624
Mr = 292.32Dx = 1.331 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 33985 reflections
a = 8.8626 (3) Åθ = 3.2–26.4°
b = 9.4552 (3) ŵ = 0.10 mm1
c = 17.4080 (5) ÅT = 180 K
V = 1458.75 (8) Å3Prism, colourless
Z = 40.45 × 0.33 × 0.12 mm
Oxford Diffraction Xcalibur Sapphire1 long nozzle diffractometer1716 independent reflections
Radiation source: fine-focus sealed tube1638 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 8.2632 pixels mm-1θmax = 26.4°, θmin = 3.2°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.650, Tmax = 1.000l = −21→21
33985 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0462P)2 + 0.2444P] where P = (Fo2 + 2Fc2)/3
1716 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.15 e Å3
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Oxford Diffraction, 2010)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.13339 (18)0.03809 (16)0.70987 (9)0.0207 (3)
C1A−0.05450 (19)0.08964 (18)0.64052 (9)0.0239 (3)
C2−0.1449 (2)0.1740 (2)0.58274 (10)0.0299 (4)
C3−0.2984 (2)0.2227 (2)0.60642 (10)0.0330 (4)
H3A−0.35780.24170.56070.040*
H3B−0.28890.31060.63470.040*
C4−0.3818 (2)0.1157 (2)0.65598 (10)0.0304 (4)
H4A−0.40020.03130.62570.036*
H4B−0.47900.15490.67020.036*
C4A−0.29707 (17)0.07384 (17)0.72924 (9)0.0220 (3)
C5−0.29623 (18)0.19549 (17)0.78766 (9)0.0233 (3)
H5A−0.25650.27970.76310.028*
H5B−0.39920.21540.80310.028*
C6−0.20299 (18)0.16391 (19)0.85886 (9)0.0244 (4)
H6A−0.24940.08680.88700.029*
H6B−0.20250.24650.89190.029*
C7−0.03943 (17)0.12379 (16)0.83876 (8)0.0194 (3)
H70.00670.20640.81420.023*
C8−0.04044 (17)0.00594 (16)0.78003 (9)0.0204 (3)
C90.05601 (18)0.08709 (18)0.90730 (9)0.0224 (3)
C100.22089 (18)0.10826 (18)0.89680 (9)0.0221 (3)
C110.0043 (2)0.0305 (3)0.97121 (11)0.0409 (5)
H11A0.07090.00371.00980.049*
H11B−0.09890.01730.97770.049*
C120.1137 (2)0.1040 (2)0.63642 (10)0.0322 (4)
H12A0.14790.07660.58630.048*
H12B0.15940.04420.67440.048*
H12C0.14150.20060.64600.048*
C13−0.3722 (2)−0.05753 (19)0.76273 (11)0.0314 (4)
H13A−0.3246−0.08170.81050.047*
H13B−0.3620−0.13480.72730.047*
H13C−0.4773−0.03880.77150.047*
C140.4577 (2)0.1183 (3)0.95628 (11)0.0376 (5)
H14A0.48320.20480.93050.056*
H14B0.49520.03950.92720.056*
H14C0.50250.11781.00650.056*
O10.29605 (13)0.10753 (16)0.96328 (7)0.0318 (3)
O20.28032 (14)0.12332 (15)0.83537 (7)0.0307 (3)
O3−0.11162 (14)−0.05477 (12)0.64566 (6)0.0263 (3)
O40.02356 (14)−0.10571 (13)0.78860 (7)0.0298 (3)
O5−0.09164 (19)0.19766 (18)0.52039 (8)0.0492 (4)
U11U22U33U12U13U23
C10.0221 (8)0.0195 (7)0.0205 (7)0.0005 (6)0.0014 (6)−0.0044 (6)
C1A0.0274 (8)0.0231 (8)0.0211 (7)0.0002 (7)0.0024 (6)−0.0017 (6)
C20.0388 (10)0.0275 (8)0.0235 (8)0.0001 (8)−0.0015 (7)0.0006 (7)
C30.0358 (10)0.0372 (10)0.0261 (8)0.0086 (9)−0.0073 (8)0.0024 (8)
C40.0239 (8)0.0380 (10)0.0293 (8)0.0020 (8)−0.0073 (7)−0.0046 (8)
C4A0.0181 (7)0.0245 (8)0.0234 (7)0.0004 (6)−0.0007 (6)−0.0025 (7)
C50.0192 (7)0.0251 (8)0.0255 (7)0.0042 (6)0.0000 (6)−0.0029 (7)
C60.0205 (8)0.0291 (9)0.0235 (8)0.0042 (7)0.0015 (7)−0.0052 (7)
C70.0184 (7)0.0201 (7)0.0198 (7)0.0001 (6)0.0003 (6)0.0001 (6)
C80.0161 (7)0.0225 (7)0.0226 (7)−0.0004 (6)0.0049 (6)0.0004 (6)
C90.0212 (8)0.0242 (8)0.0218 (7)0.0006 (7)0.0005 (6)−0.0003 (6)
C100.0215 (8)0.0232 (8)0.0215 (7)0.0022 (7)−0.0012 (6)0.0009 (7)
C110.0256 (9)0.0678 (14)0.0294 (9)−0.0027 (9)−0.0007 (8)0.0167 (10)
C120.0284 (9)0.0370 (10)0.0314 (8)−0.0018 (9)0.0083 (7)−0.0012 (8)
C130.0262 (9)0.0300 (9)0.0379 (9)−0.0058 (8)0.0026 (8)−0.0030 (8)
C140.0194 (8)0.0599 (12)0.0336 (9)−0.0015 (9)−0.0043 (7)0.0025 (10)
O10.0201 (6)0.0533 (8)0.0221 (6)−0.0018 (6)−0.0024 (5)0.0008 (6)
O20.0256 (6)0.0437 (8)0.0226 (6)0.0003 (6)0.0034 (5)0.0049 (6)
O30.0327 (6)0.0227 (6)0.0235 (6)0.0004 (5)0.0021 (5)−0.0059 (5)
O40.0329 (6)0.0234 (6)0.0331 (6)0.0086 (5)−0.0033 (5)−0.0013 (5)
O50.0603 (9)0.0587 (10)0.0286 (7)0.0110 (8)0.0104 (7)0.0139 (7)
C1—O31.4344 (19)C6—H6B0.9700
C1—C1A1.478 (2)C7—C91.503 (2)
C1—C81.504 (2)C7—C81.512 (2)
C1—C4A1.527 (2)C7—H70.9800
C1A—O31.459 (2)C8—O41.208 (2)
C1A—C121.499 (2)C9—C111.317 (2)
C1A—C21.513 (2)C9—C101.486 (2)
C2—O51.204 (2)C10—O21.2005 (19)
C2—C31.495 (3)C10—O11.3354 (19)
C3—C41.521 (3)C11—H11A0.9300
C3—H3A0.9700C11—H11B0.9300
C3—H3B0.9700C12—H12A0.9600
C4—C4A1.532 (2)C12—H12B0.9600
C4—H4A0.9700C12—H12C0.9600
C4—H4B0.9700C13—H13A0.9600
C4A—C131.525 (2)C13—H13B0.9600
C4A—C51.535 (2)C13—H13C0.9600
C5—C61.519 (2)C14—O11.442 (2)
C5—H5A0.9700C14—H14A0.9600
C5—H5B0.9700C14—H14B0.9600
C6—C71.539 (2)C14—H14C0.9600
C6—H6A0.9700
O3—C1—C1A60.11 (10)C5—C6—H6B109.2
O3—C1—C8115.80 (13)C7—C6—H6B109.2
C1A—C1—C8118.09 (13)H6A—C6—H6B107.9
O3—C1—C4A115.81 (12)C9—C7—C8111.71 (13)
C1A—C1—C4A123.84 (14)C9—C7—C6113.99 (13)
C8—C1—C4A112.69 (13)C8—C7—C6109.26 (12)
O3—C1A—C158.47 (10)C9—C7—H7107.2
O3—C1A—C12115.66 (14)C8—C7—H7107.2
C1—C1A—C12122.65 (15)C6—C7—H7107.2
O3—C1A—C2110.53 (14)O4—C8—C1122.29 (15)
C1—C1A—C2117.81 (15)O4—C8—C7123.90 (15)
C12—C1A—C2116.54 (16)C1—C8—C7113.78 (13)
O5—C2—C3123.23 (18)C11—C9—C10120.07 (15)
O5—C2—C1A119.32 (18)C11—C9—C7124.64 (15)
C3—C2—C1A117.45 (15)C10—C9—C7115.12 (14)
C2—C3—C4113.19 (16)O2—C10—O1123.63 (15)
C2—C3—H3A108.9O2—C10—C9123.85 (15)
C4—C3—H3A108.9O1—C10—C9112.52 (14)
C2—C3—H3B108.9C9—C11—H11A120.0
C4—C3—H3B108.9C9—C11—H11B120.0
H3A—C3—H3B107.8H11A—C11—H11B120.0
C3—C4—C4A113.97 (14)C1A—C12—H12A109.5
C3—C4—H4A108.8C1A—C12—H12B109.5
C4A—C4—H4A108.8H12A—C12—H12B109.5
C3—C4—H4B108.8C1A—C12—H12C109.5
C4A—C4—H4B108.8H12A—C12—H12C109.5
H4A—C4—H4B107.7H12B—C12—H12C109.5
C13—C4A—C1108.59 (14)C4A—C13—H13A109.5
C13—C4A—C4108.35 (14)C4A—C13—H13B109.5
C1—C4A—C4109.80 (13)H13A—C13—H13B109.5
C13—C4A—C5111.05 (13)C4A—C13—H13C109.5
C1—C4A—C5107.90 (12)H13A—C13—H13C109.5
C4—C4A—C5111.11 (13)H13B—C13—H13C109.5
C6—C5—C4A113.32 (13)O1—C14—H14A109.5
C6—C5—H5A108.9O1—C14—H14B109.5
C4A—C5—H5A108.9H14A—C14—H14B109.5
C6—C5—H5B108.9O1—C14—H14C109.5
C4A—C5—H5B108.9H14A—C14—H14C109.5
H5A—C5—H5B107.7H14B—C14—H14C109.5
C5—C6—C7112.04 (13)C10—O1—C14114.97 (13)
C5—C6—H6A109.2C1—O3—C1A61.42 (10)
C7—C6—H6A109.2
D—H···AD—HH···AD···AD—H···A
C3—H3A···O5i0.972.573.492 (2)158
C5—H5A···O4ii0.972.503.337 (2)145
C7—H7···O3ii0.982.543.3321 (19)138
C7—H7···O4ii0.982.543.3877 (19)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O5i0.972.573.492 (2)158
C5—H5A⋯O4ii0.972.503.337 (2)145
C7—H7⋯O3ii0.982.543.3321 (19)138
C7—H7⋯O4ii0.982.543.3877 (19)145

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure of Cyperanic Acid, a New Sesquiterpene from Dittrichia viscosa.

Authors:  P Ceccherelli; M Curini; M C Marcotullio; A Menghini
Journal:  J Nat Prod       Date:  1988-09       Impact factor: 4.050

3.  [Helenine and santonine, the 12-carboxy-eudesma-3,11(13) diene].

Authors:  P Azoulay; J P Reynier; G Balansard; M Gasquet; P Timon-David
Journal:  Pharm Acta Helv       Date:  1986

4.  Flavonoids from Dittrichia viscosa.

Authors:  I Chiappini; G Fardella; A Menghini; C Rossi
Journal:  Planta Med       Date:  1982-03       Impact factor: 3.352

5.  12-carboxyeudesma-3,11(13)-diene. A novel sesquiterpenic acid with a narrow antifungal spectrum.

Authors:  G Shtacher; Y Kashman
Journal:  J Med Chem       Date:  1970-11       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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