Literature DB >> 22347008

9β-Hy-droxy-6,9-dimethyl-3-methyl-ene-3a,4,8,9,9a,9b-hexa-hydro-azuleno[4,5-b]furan-2(3H)-one.

Mohamed Moumou, Ahmed Benharref, Jean Claude Daran, Fouad Mellouki, Moha Berraho.   

Abstract

The title compound, C(15)H(18)O(3), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxa-tricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The seven-membered ring of the title compound shows a chair conformation, while the five-membered rings exibit different conformations, viz a twisted one for the lactone ring and an envelope conformation for the other five-membered ring with the C atom closest to the hydroxy group forming the flap. In the crystal, O-H⋯O hydrogen bonds connect mol-ecules into dimers that are inter-connected by C-H⋯O inter-actions, producing supramolecular chains along the b axis.

Entities:  

Year:  2012        PMID: 22347008      PMCID: PMC3275063          DOI: 10.1107/S1600536812000165

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); Bellakhdar (1997 ▶); El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this sesquiterpene, see: El Haib et al. (2011 ▶) For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H18O3 M = 246.29 Monoclinic, a = 15.6732 (9) Å b = 7.4208 (4) Å c = 11.0544 (6) Å β = 103.169 (6)° V = 1251.90 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 180 K 0.42 × 0.19 × 0.12 mm

Data collection

Agilent Xcalibur Eos Gemini Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.631, T max = 1.000 13492 measured reflections 1378 independent reflections 1313 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.080 S = 1.05 1378 reflections 166 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000165/im2349sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000165/im2349Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000165/im2349Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H18O3F(000) = 528
Mr = 246.29Dx = 1.307 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 9785 reflections
a = 15.6732 (9) Åθ = 3–26.4°
b = 7.4208 (4) ŵ = 0.09 mm1
c = 11.0544 (6) ÅT = 180 K
β = 103.169 (6)°Box, pale yellow
V = 1251.90 (12) Å30.42 × 0.19 × 0.12 mm
Z = 4
Agilent Xcalibur Eos Gemini Ultra diffractometer1378 independent reflections
Radiation source: fine-focus sealed tube1313 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 8.2632 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −19→19
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −9→9
Tmin = 0.631, Tmax = 1.000l = −13→13
13492 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0581P)2 + 0.1945P] where P = (Fo2 + 2Fc2)/3
1378 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = −0.15 e Å3
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies, 2010)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.80721 (11)0.4633 (2)0.61618 (14)0.0267 (3)
C20.87339 (12)0.4573 (3)0.55907 (15)0.0380 (4)
H20.86660.47460.47410.046*
C30.95947 (12)0.4201 (4)0.64549 (17)0.0455 (5)
H3A1.00490.49760.62780.055*
H3B0.97660.29530.63990.055*
C40.94229 (10)0.4614 (3)0.77340 (14)0.0322 (4)
C50.84280 (10)0.4259 (2)0.75363 (14)0.0246 (3)
H50.83530.29680.76660.030*
C60.79591 (9)0.5247 (2)0.83742 (14)0.0233 (3)
H60.79500.65400.81920.028*
C70.70300 (10)0.4572 (2)0.82786 (14)0.0265 (3)
H70.70160.32760.81060.032*
C80.63569 (11)0.5483 (3)0.72710 (16)0.0338 (4)
H8A0.57820.50470.73190.041*
H8B0.63720.67660.74430.041*
C90.64585 (11)0.5222 (3)0.59733 (16)0.0323 (4)
H90.59350.53050.53780.039*
C100.71551 (11)0.4891 (2)0.54969 (14)0.0287 (4)
C110.69280 (10)0.4841 (2)0.95746 (15)0.0283 (3)
C120.78211 (11)0.4836 (2)1.03860 (15)0.0290 (3)
C130.62238 (13)0.5135 (3)1.00137 (19)0.0401 (5)
H13A0.62800.53491.08570.048*
H13B0.56720.51290.94790.048*
C140.70133 (13)0.4837 (3)0.41040 (15)0.0402 (4)
H14A0.64030.50110.37340.060*
H14B0.71980.36900.38550.060*
H14C0.73480.57770.38350.060*
C150.96829 (12)0.6516 (3)0.81170 (19)0.0416 (5)
H15A0.95420.67670.89010.062*
H15B0.93710.73350.75010.062*
H15C1.03020.66600.81940.062*
O10.80505 (9)0.4767 (2)1.14968 (11)0.0415 (3)
O20.84070 (7)0.49325 (18)0.96669 (9)0.0290 (3)
O30.98840 (8)0.3361 (2)0.86299 (13)0.0437 (4)
H31.03460.38130.90050.065*
U11U22U33U12U13U23
C10.0301 (8)0.0277 (8)0.0211 (7)0.0032 (7)0.0037 (6)−0.0003 (7)
C20.0369 (9)0.0543 (12)0.0231 (7)0.0066 (10)0.0078 (7)0.0013 (9)
C30.0317 (9)0.0765 (16)0.0308 (9)0.0111 (10)0.0126 (7)0.0002 (9)
C40.0201 (7)0.0513 (11)0.0253 (7)0.0084 (8)0.0054 (6)0.0037 (8)
C50.0222 (7)0.0281 (8)0.0230 (7)0.0048 (6)0.0039 (5)0.0012 (6)
C60.0211 (7)0.0267 (8)0.0215 (7)0.0020 (6)0.0038 (5)0.0009 (6)
C70.0219 (7)0.0281 (8)0.0299 (8)0.0012 (6)0.0066 (6)0.0011 (7)
C80.0204 (7)0.0410 (10)0.0386 (10)0.0043 (7)0.0037 (7)0.0056 (8)
C90.0241 (8)0.0351 (10)0.0325 (8)−0.0005 (7)−0.0044 (6)0.0052 (7)
C100.0316 (8)0.0247 (8)0.0258 (7)0.0001 (7)−0.0018 (6)0.0015 (7)
C110.0298 (8)0.0238 (8)0.0337 (8)0.0013 (7)0.0122 (6)0.0021 (7)
C120.0336 (8)0.0276 (8)0.0282 (8)0.0031 (8)0.0122 (6)−0.0002 (7)
C130.0361 (9)0.0428 (11)0.0471 (10)0.0010 (8)0.0218 (8)0.0011 (9)
C140.0467 (10)0.0422 (11)0.0261 (8)0.0043 (10)−0.0030 (7)0.0002 (8)
C150.0245 (8)0.0556 (12)0.0437 (10)−0.0066 (8)0.0054 (7)0.0022 (10)
O10.0481 (7)0.0523 (8)0.0255 (6)0.0011 (7)0.0114 (5)−0.0005 (6)
O20.0244 (5)0.0407 (7)0.0218 (5)0.0026 (5)0.0049 (4)−0.0002 (5)
O30.0232 (6)0.0660 (10)0.0394 (7)0.0125 (6)0.0021 (5)0.0152 (7)
C1—C21.332 (2)C8—C91.492 (3)
C1—C101.470 (2)C8—H8A0.9700
C1—C51.520 (2)C8—H8B0.9700
C2—C31.491 (2)C9—C101.339 (3)
C2—H20.9300C9—H90.9300
C3—C41.530 (2)C10—C141.505 (2)
C3—H3A0.9700C11—C131.321 (2)
C3—H3B0.9700C11—C121.481 (2)
C4—O31.429 (2)C12—O11.199 (2)
C4—C151.503 (3)C12—O21.3464 (19)
C4—C51.547 (2)C13—H13A0.9300
C5—C61.498 (2)C13—H13B0.9300
C5—H50.9800C14—H14A0.9600
C6—O21.4602 (18)C14—H14B0.9600
C6—C71.520 (2)C14—H14C0.9600
C6—H60.9800C15—H15A0.9600
C7—C111.491 (2)C15—H15B0.9600
C7—C81.508 (2)C15—H15C0.9600
C7—H70.9800O3—H30.8200
C2—C1—C10123.05 (14)C9—C8—C7116.23 (15)
C2—C1—C5108.64 (14)C9—C8—H8A108.2
C10—C1—C5128.16 (14)C7—C8—H8A108.2
C1—C2—C3113.02 (14)C9—C8—H8B108.2
C1—C2—H2123.5C7—C8—H8B108.2
C3—C2—H2123.5H8A—C8—H8B107.4
C2—C3—C4103.37 (14)C10—C9—C8132.66 (15)
C2—C3—H3A111.1C10—C9—H9113.7
C4—C3—H3A111.1C8—C9—H9113.7
C2—C3—H3B111.1C9—C10—C1128.26 (14)
C4—C3—H3B111.1C9—C10—C14117.63 (15)
H3A—C3—H3B109.1C1—C10—C14114.06 (15)
O3—C4—C15110.74 (15)C13—C11—C12122.10 (16)
O3—C4—C3110.03 (16)C13—C11—C7131.05 (16)
C15—C4—C3110.80 (17)C12—C11—C7106.76 (13)
O3—C4—C5108.76 (15)O1—C12—O2121.41 (15)
C15—C4—C5113.55 (15)O1—C12—C11129.93 (15)
C3—C4—C5102.67 (13)O2—C12—C11108.66 (13)
C6—C5—C1114.13 (13)C11—C13—H13A120.0
C6—C5—C4116.75 (13)C11—C13—H13B120.0
C1—C5—C4103.81 (12)H13A—C13—H13B120.0
C6—C5—H5107.2C10—C14—H14A109.5
C1—C5—H5107.2C10—C14—H14B109.5
C4—C5—H5107.2H14A—C14—H14B109.5
O2—C6—C5109.43 (12)C10—C14—H14C109.5
O2—C6—C7104.76 (11)H14A—C14—H14C109.5
C5—C6—C7113.14 (13)H14B—C14—H14C109.5
O2—C6—H6109.8C4—C15—H15A109.5
C5—C6—H6109.8C4—C15—H15B109.5
C7—C6—H6109.8H15A—C15—H15B109.5
C11—C7—C8116.08 (14)C4—C15—H15C109.5
C11—C7—C6101.53 (12)H15A—C15—H15C109.5
C8—C7—C6113.67 (14)H15B—C15—H15C109.5
C11—C7—H7108.4C12—O2—C6110.23 (12)
C8—C7—H7108.4C4—O3—H3109.5
C6—C7—H7108.4
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.822.313.128 (2)171
C8—H8B···O1ii0.972.583.500 (2)158
C7—H7···O1iii0.982.653.579 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.822.313.128 (2)171
C8—H8B⋯O1ii0.972.583.500 (2)158
C7—H7⋯O1iii0.982.653.579 (2)159

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

4.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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