Literature DB >> 22346998

2-(4-Fluoro-phen-yl)-5,6-methyl-enedi-oxy-3-phenyl-sulfinyl-1-benzofuran monohydrate.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(21)H(13)FO(4)S·H(2)O, the dihedral angles between the mean plane of the benzofuran fragment (r.m.s. deviation = 0.005 Å) and the pendant 4-fluoro-phenyl and phenyl rings are 6.24 (7) and 83.39 (6)°, respectively. In the crystal, mol-ecules are linked by O-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346998      PMCID: PMC3275053          DOI: 10.1107/S160053681105553X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al.(2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the crystal structure of related compound, see: Choi et al. (2009 ▶).

Experimental

Crystal data

C21H13FO4S·H2O M = 398.39 Monoclinic, a = 8.2485 (2) Å b = 33.5624 (9) Å c = 6.1854 (2) Å β = 93.001 (2)° V = 1710.01 (8) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 173 K 0.39 × 0.16 × 0.11 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.915, T max = 0.975 16270 measured reflections 3947 independent reflections 3235 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.120 S = 1.02 3947 reflections 261 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.94 e Å−3 Δρmin = −0.61 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681105553X/lr2043sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105553X/lr2043Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H13FO4S·H2OF(000) = 824
Mr = 398.39Dx = 1.547 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4953 reflections
a = 8.2485 (2) Åθ = 2.4–28.3°
b = 33.5624 (9) ŵ = 0.23 mm1
c = 6.1854 (2) ÅT = 173 K
β = 93.001 (2)°Block, colourless
V = 1710.01 (8) Å30.39 × 0.16 × 0.11 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3947 independent reflections
Radiation source: rotating anode3235 reflections with I > 2σ(I)
graphite multilayerRint = 0.036
Detector resolution: 10.0 pixels mm-1θmax = 27.6°, θmin = 1.2°
φ and ω scansh = −10→9
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −43→35
Tmin = 0.915, Tmax = 0.975l = −8→7
16270 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: difference Fourier map
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0512P)2 + 1.6272P] where P = (Fo2 + 2Fc2)/3
3947 reflections(Δ/σ)max < 0.001
261 parametersΔρmax = 0.94 e Å3
0 restraintsΔρmin = −0.61 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.50867 (6)0.170330 (15)0.88006 (8)0.02163 (14)
F10.92782 (18)0.04232 (4)1.5856 (2)0.0415 (4)
O10.49612 (16)0.05550 (4)0.7261 (2)0.0205 (3)
O20.14035 (19)0.12607 (5)0.0740 (3)0.0318 (4)
O30.1737 (2)0.05788 (5)0.0443 (3)0.0330 (4)
O40.36252 (17)0.19343 (4)0.8043 (3)0.0283 (3)
C10.4801 (2)0.12171 (6)0.7748 (3)0.0181 (4)
C20.3882 (2)0.11212 (6)0.5762 (3)0.0191 (4)
C30.2973 (2)0.13442 (6)0.4188 (3)0.0210 (4)
H30.28380.16250.42800.025*
C40.2305 (2)0.11216 (6)0.2522 (3)0.0222 (4)
C50.0887 (3)0.09168 (7)−0.0456 (4)0.0271 (5)
H5A0.11250.0949−0.19980.033*
H5B−0.02980.0879−0.03650.033*
C60.2492 (2)0.07098 (6)0.2341 (3)0.0230 (4)
C70.3353 (2)0.04845 (6)0.3848 (3)0.0230 (4)
H70.34750.02040.37410.028*
C80.4031 (2)0.07100 (6)0.5549 (3)0.0201 (4)
C90.5414 (2)0.08705 (6)0.8597 (3)0.0186 (4)
C100.6438 (2)0.07586 (6)1.0502 (3)0.0191 (4)
C110.6993 (3)0.03679 (6)1.0741 (3)0.0255 (5)
H110.67000.01770.96590.031*
C120.7964 (3)0.02540 (7)1.2529 (4)0.0294 (5)
H120.8349−0.00121.26810.035*
C130.8354 (3)0.05361 (7)1.4074 (3)0.0270 (5)
C140.7845 (3)0.09240 (7)1.3922 (3)0.0260 (5)
H140.81470.11121.50200.031*
C150.6878 (2)0.10357 (6)1.2123 (3)0.0228 (4)
H150.65100.13031.19870.027*
C160.6720 (2)0.18499 (6)0.7173 (3)0.0197 (4)
C170.8292 (2)0.17949 (6)0.8061 (4)0.0255 (4)
H170.84730.16850.94690.031*
C180.9588 (3)0.19039 (7)0.6845 (4)0.0329 (5)
H181.06700.18650.74110.039*
C190.9309 (3)0.20687 (7)0.4815 (4)0.0348 (5)
H191.02010.21410.39870.042*
C200.7737 (3)0.21292 (7)0.3973 (4)0.0305 (5)
H200.75590.22460.25840.037*
C210.6421 (3)0.20191 (6)0.5153 (3)0.0242 (4)
H210.53410.20590.45850.029*
O5W0.2797 (2)0.22591 (6)0.2201 (3)0.0421 (4)
H5WA0.307 (5)0.2545 (13)0.220 (6)0.084 (12)*
H5WB0.292 (4)0.2198 (12)0.069 (7)0.083 (12)*
U11U22U33U12U13U23
S10.0222 (2)0.0171 (3)0.0259 (3)0.00014 (18)0.00387 (19)−0.0036 (2)
F10.0526 (9)0.0387 (8)0.0310 (8)0.0113 (7)−0.0197 (7)−0.0006 (6)
O10.0263 (7)0.0156 (7)0.0192 (7)0.0000 (5)−0.0028 (6)−0.0017 (5)
O20.0371 (9)0.0290 (9)0.0277 (8)0.0027 (7)−0.0124 (7)0.0002 (7)
O30.0407 (9)0.0296 (9)0.0272 (8)0.0021 (7)−0.0123 (7)−0.0066 (7)
O40.0244 (7)0.0239 (8)0.0367 (9)0.0046 (6)0.0012 (6)0.0001 (7)
C10.0187 (9)0.0165 (9)0.0193 (9)−0.0003 (7)0.0024 (7)−0.0018 (8)
C20.0176 (8)0.0182 (10)0.0217 (10)−0.0013 (7)0.0021 (7)−0.0008 (8)
C30.0203 (9)0.0175 (10)0.0251 (10)0.0010 (7)0.0019 (8)0.0008 (8)
C40.0190 (9)0.0252 (11)0.0222 (10)0.0010 (8)−0.0012 (8)0.0030 (8)
C50.0244 (10)0.0320 (12)0.0245 (11)−0.0010 (9)−0.0024 (8)−0.0011 (9)
C60.0229 (9)0.0244 (11)0.0215 (10)−0.0031 (8)−0.0005 (8)−0.0029 (8)
C70.0258 (10)0.0187 (10)0.0243 (10)0.0000 (8)−0.0008 (8)−0.0032 (8)
C80.0193 (9)0.0192 (10)0.0220 (10)−0.0003 (7)0.0010 (7)0.0008 (8)
C90.0187 (9)0.0173 (10)0.0201 (9)−0.0017 (7)0.0022 (7)−0.0020 (8)
C100.0181 (9)0.0205 (10)0.0188 (9)−0.0006 (7)0.0021 (7)−0.0001 (8)
C110.0313 (11)0.0204 (11)0.0243 (11)0.0020 (8)−0.0028 (9)−0.0033 (8)
C120.0356 (11)0.0217 (11)0.0302 (12)0.0049 (9)−0.0043 (9)0.0009 (9)
C130.0275 (10)0.0314 (12)0.0215 (10)0.0036 (9)−0.0044 (8)0.0025 (9)
C140.0296 (11)0.0265 (11)0.0216 (10)0.0001 (9)−0.0025 (8)−0.0049 (9)
C150.0265 (10)0.0191 (10)0.0228 (10)0.0024 (8)0.0016 (8)−0.0015 (8)
C160.0187 (9)0.0159 (9)0.0245 (10)−0.0013 (7)0.0018 (8)−0.0034 (8)
C170.0235 (10)0.0229 (11)0.0298 (11)−0.0006 (8)−0.0021 (9)−0.0006 (9)
C180.0188 (9)0.0330 (13)0.0467 (14)−0.0010 (9)0.0008 (9)−0.0024 (11)
C190.0313 (11)0.0295 (13)0.0449 (14)−0.0048 (10)0.0140 (10)−0.0007 (11)
C200.0391 (12)0.0264 (12)0.0262 (11)−0.0021 (10)0.0044 (9)0.0013 (9)
C210.0245 (10)0.0212 (11)0.0263 (11)−0.0003 (8)−0.0032 (8)−0.0019 (8)
O5W0.0574 (12)0.0293 (10)0.0406 (11)−0.0024 (8)0.0123 (9)−0.0008 (8)
S1—O41.4883 (15)C10—C111.394 (3)
S1—C11.768 (2)C10—C151.401 (3)
S1—C161.792 (2)C11—C121.385 (3)
F1—C131.361 (2)C11—H110.9500
O1—C81.377 (2)C12—C131.372 (3)
O1—C91.382 (2)C12—H120.9500
O2—C41.379 (2)C13—C141.370 (3)
O2—C51.424 (3)C14—C151.386 (3)
O3—C61.372 (2)C14—H140.9500
O3—C51.431 (3)C15—H150.9500
C1—C91.362 (3)C16—C211.382 (3)
C1—C21.446 (3)C16—C171.394 (3)
C2—C81.392 (3)C17—C181.388 (3)
C2—C31.412 (3)C17—H170.9500
C3—C41.365 (3)C18—C191.380 (4)
C3—H30.9500C18—H180.9500
C4—C61.396 (3)C19—C201.386 (3)
C5—H5A0.9900C19—H190.9500
C5—H5B0.9900C20—C211.389 (3)
C6—C71.370 (3)C20—H200.9500
C7—C81.390 (3)C21—H210.9500
C7—H70.9500O5W—H5WA0.99 (4)
C9—C101.463 (3)O5W—H5WB0.97 (4)
O4—S1—C1105.95 (9)C11—C10—C9119.98 (18)
O4—S1—C16107.47 (9)C15—C10—C9121.54 (18)
C1—S1—C1697.82 (9)C12—C11—C10121.2 (2)
C8—O1—C9107.01 (15)C12—C11—H11119.4
C4—O2—C5105.97 (16)C10—C11—H11119.4
C6—O3—C5105.66 (16)C13—C12—C11118.1 (2)
C9—C1—C2107.74 (17)C13—C12—H12121.0
C9—C1—S1127.35 (15)C11—C12—H12121.0
C2—C1—S1124.90 (15)F1—C13—C14118.50 (19)
C8—C2—C3120.43 (18)F1—C13—C12118.2 (2)
C8—C2—C1104.83 (17)C14—C13—C12123.3 (2)
C3—C2—C1134.74 (19)C13—C14—C15118.3 (2)
C4—C3—C2114.14 (19)C13—C14—H14120.9
C4—C3—H3122.9C15—C14—H14120.9
C2—C3—H3122.9C14—C15—C10120.8 (2)
C3—C4—O2126.70 (19)C14—C15—H15119.6
C3—C4—C6124.11 (19)C10—C15—H15119.6
O2—C4—C6109.16 (17)C21—C16—C17121.89 (19)
O2—C5—O3108.26 (16)C21—C16—S1121.13 (15)
O2—C5—H5A110.0C17—C16—S1116.96 (16)
O3—C5—H5A110.0C18—C17—C16118.6 (2)
O2—C5—H5B110.0C18—C17—H17120.7
O3—C5—H5B110.0C16—C17—H17120.7
H5A—C5—H5B108.4C19—C18—C17120.1 (2)
C7—C6—O3127.0 (2)C19—C18—H18119.9
C7—C6—C4123.18 (19)C17—C18—H18119.9
O3—C6—C4109.81 (18)C18—C19—C20120.6 (2)
C6—C7—C8112.86 (19)C18—C19—H19119.7
C6—C7—H7123.6C20—C19—H19119.7
C8—C7—H7123.6C19—C20—C21120.3 (2)
O1—C8—C7124.23 (18)C19—C20—H20119.8
O1—C8—C2110.50 (17)C21—C20—H20119.8
C7—C8—C2125.26 (19)C16—C21—C20118.5 (2)
C1—C9—O1109.91 (17)C16—C21—H21120.8
C1—C9—C10135.77 (18)C20—C21—H21120.8
O1—C9—C10114.29 (16)H5WA—O5W—H5WB100 (3)
C11—C10—C15118.48 (19)
O4—S1—C1—C9−152.40 (17)C2—C1—C9—O10.7 (2)
C16—S1—C1—C996.85 (18)S1—C1—C9—O1−177.99 (13)
O4—S1—C1—C229.11 (18)C2—C1—C9—C10179.0 (2)
C16—S1—C1—C2−81.65 (17)S1—C1—C9—C100.3 (3)
C9—C1—C2—C8−0.6 (2)C8—O1—C9—C1−0.5 (2)
S1—C1—C2—C8178.14 (14)C8—O1—C9—C10−179.20 (15)
C9—C1—C2—C3179.6 (2)C1—C9—C10—C11−172.4 (2)
S1—C1—C2—C3−1.7 (3)O1—C9—C10—C115.7 (3)
C8—C2—C3—C4−0.4 (3)C1—C9—C10—C157.8 (3)
C1—C2—C3—C4179.5 (2)O1—C9—C10—C15−173.98 (17)
C2—C3—C4—O2−178.00 (18)C15—C10—C11—C12−0.3 (3)
C2—C3—C4—C6−0.4 (3)C9—C10—C11—C12180.00 (19)
C5—O2—C4—C3−176.2 (2)C10—C11—C12—C130.6 (3)
C5—O2—C4—C65.9 (2)C11—C12—C13—F1178.6 (2)
C4—O2—C5—O3−10.2 (2)C11—C12—C13—C14−0.7 (4)
C6—O3—C5—O210.6 (2)F1—C13—C14—C15−178.81 (19)
C5—O3—C6—C7174.8 (2)C12—C13—C14—C150.5 (3)
C5—O3—C6—C4−7.0 (2)C13—C14—C15—C10−0.1 (3)
C3—C4—C6—C71.0 (3)C11—C10—C15—C140.0 (3)
O2—C4—C6—C7178.98 (19)C9—C10—C15—C14179.77 (18)
C3—C4—C6—O3−177.25 (18)O4—S1—C16—C21−22.09 (19)
O2—C4—C6—O30.7 (2)C1—S1—C16—C2187.42 (18)
O3—C6—C7—C8177.22 (19)O4—S1—C16—C17156.30 (16)
C4—C6—C7—C8−0.7 (3)C1—S1—C16—C17−94.18 (17)
C9—O1—C8—C7179.68 (18)C21—C16—C17—C18−1.8 (3)
C9—O1—C8—C20.1 (2)S1—C16—C17—C18179.81 (17)
C6—C7—C8—O1−179.52 (17)C16—C17—C18—C191.0 (3)
C6—C7—C8—C20.0 (3)C17—C18—C19—C200.4 (4)
C3—C2—C8—O1−179.85 (16)C18—C19—C20—C21−0.9 (4)
C1—C2—C8—O10.3 (2)C17—C16—C21—C201.2 (3)
C3—C2—C8—C70.6 (3)S1—C16—C21—C20179.56 (16)
C1—C2—C8—C7−179.26 (18)C19—C20—C21—C160.2 (3)
D—H···AD—HH···AD···AD—H···A
C18—H18···O4i0.952.463.375 (3)162.
C19—H19···O5wi0.952.493.433 (3)171.
O5W—H5WA···O4ii0.99 (4)1.87 (4)2.834 (2)164 (3)
O5W—H5WB···O4iii0.97 (4)1.98 (4)2.908 (2)161 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18⋯O4i0.952.463.375 (3)162
C19—H19⋯O5wi0.952.493.433 (3)171
O5W—H5WA⋯O4ii0.99 (4)1.87 (4)2.834 (2)164 (3)
O5W—H5WB⋯O4iii0.97 (4)1.98 (4)2.908 (2)161 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(4-Bromo-phen-yl)-5,6-methyl-enedi-oxy-3-phenyl-sulfinyl-1-benzofuran benzene solvate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

  7 in total

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