| Literature DB >> 22346986 |
Xuehui Hou1, Zigang Li, Quanjian Lv.
Abstract
In the crystal structure of the title amino alcohol derivitive, C(12)H(19)NO(2), mol-ecules are linked by N-H⋯O hydrogen bonds. The mol-ecular structure exhibits an intra-molecular O-H⋯N hydrogen bond.Entities:
Year: 2012 PMID: 22346986 PMCID: PMC3275041 DOI: 10.1107/S1600536812000566
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H19NO2 | |
| Mo | |
| Tetragonal, | Cell parameters from 2006 reflections |
| Hall symbol: P -4 2n | θ = 2.3–19.8° |
| µ = 0.08 mm−1 | |
| Block, colourless | |
| 0.45 × 0.38 × 0.37 mm | |
| Bruker SMART CCD diffractometer | 1252 independent reflections |
| Radiation source: fine-focus sealed tube | 676 reflections with |
| graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 25.0°, θmin = 1.9° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 9624 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 1252 reflections | (Δ/σ)max < 0.001 |
| 138 parameters | Δρmax = 0.24 e Å−3 |
| 16 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.5032 (3) | 0.6282 (4) | 0.7225 (4) | 0.0824 (15) | |
| O2 | 0.3665 (3) | 0.6526 (3) | 0.5499 (4) | 0.0750 (14) | |
| H2 | 0.3250 | 0.6451 | 0.5027 | 0.090* | |
| N1 | 0.2523 (3) | 0.5115 (4) | 0.5235 (5) | 0.0700 (17) | |
| H1 | 0.2831 | 0.4635 | 0.4999 | 0.084* | |
| C1 | 0.4135 (5) | 0.6047 (5) | 0.7440 (7) | 0.074 (2) | |
| H1C | 0.3813 | 0.6547 | 0.7774 | 0.089* | |
| H1D | 0.4101 | 0.5561 | 0.8016 | 0.089* | |
| C2 | 0.3755 (5) | 0.5783 (5) | 0.6253 (7) | 0.0639 (17) | |
| H2A | 0.4151 | 0.5357 | 0.5858 | 0.077* | |
| C3 | 0.2859 (4) | 0.5375 (5) | 0.6394 (7) | 0.0650 (19) | |
| H3A | 0.2898 | 0.4863 | 0.6925 | 0.078* | |
| H3B | 0.2459 | 0.5798 | 0.6768 | 0.078* | |
| C4 | 0.1582 (5) | 0.4884 (6) | 0.5218 (7) | 0.099 (3) | |
| H4 | 0.1242 | 0.5369 | 0.5583 | 0.119* | |
| C5 | 0.1313 (6) | 0.4781 (9) | 0.3916 (9) | 0.145 (5) | |
| H5A | 0.1431 | 0.5319 | 0.3481 | 0.218* | |
| H5B | 0.0692 | 0.4650 | 0.3874 | 0.218* | |
| H5C | 0.1642 | 0.4305 | 0.3553 | 0.218* | |
| C6 | 0.1420 (7) | 0.4060 (7) | 0.5930 (11) | 0.152 (5) | |
| H6A | 0.1765 | 0.3586 | 0.5592 | 0.228* | |
| H6B | 0.0804 | 0.3909 | 0.5890 | 0.228* | |
| H6C | 0.1588 | 0.4152 | 0.6766 | 0.228* | |
| C7 | 0.5482 (4) | 0.6682 (5) | 0.8129 (7) | 0.072 (2) | |
| C8 | 0.5118 (5) | 0.6915 (5) | 0.9248 (6) | 0.083 (2) | |
| H8 | 0.4530 | 0.6790 | 0.9430 | 0.100* | |
| C9 | 0.5660 (6) | 0.7339 (5) | 1.0086 (8) | 0.099 (3) | |
| H9 | 0.5437 | 0.7495 | 1.0848 | 0.119* | |
| C10 | 0.6534 (6) | 0.7533 (6) | 0.9800 (11) | 0.111 (4) | |
| H10 | 0.6886 | 0.7831 | 1.0362 | 0.133* | |
| C11 | 0.6867 (7) | 0.7298 (5) | 0.8730 (10) | 0.103 (3) | |
| H11 | 0.7458 | 0.7418 | 0.8563 | 0.124* | |
| C12 | 0.6357 (4) | 0.6876 (5) | 0.7852 (8) | 0.086 (2) | |
| H12 | 0.6596 | 0.6727 | 0.7096 | 0.103* |
| O1 | 0.056 (3) | 0.109 (4) | 0.082 (3) | −0.016 (3) | −0.003 (3) | −0.020 (3) |
| O2 | 0.067 (3) | 0.077 (3) | 0.081 (3) | 0.001 (3) | −0.007 (3) | 0.005 (3) |
| N1 | 0.048 (3) | 0.070 (4) | 0.092 (4) | −0.002 (3) | −0.002 (3) | −0.025 (4) |
| C1 | 0.056 (4) | 0.088 (5) | 0.078 (5) | −0.013 (4) | 0.005 (4) | −0.009 (4) |
| C2 | 0.056 (4) | 0.064 (4) | 0.072 (4) | 0.001 (3) | −0.005 (4) | −0.003 (4) |
| C3 | 0.057 (4) | 0.062 (4) | 0.076 (5) | −0.008 (3) | 0.001 (4) | −0.009 (4) |
| C4 | 0.048 (4) | 0.110 (7) | 0.139 (8) | −0.012 (4) | −0.004 (5) | −0.040 (7) |
| C5 | 0.075 (6) | 0.211 (13) | 0.150 (9) | −0.007 (8) | −0.041 (7) | −0.060 (9) |
| C6 | 0.102 (8) | 0.157 (10) | 0.196 (13) | −0.066 (7) | 0.020 (8) | −0.001 (10) |
| C7 | 0.067 (5) | 0.066 (5) | 0.082 (5) | −0.004 (4) | −0.011 (4) | −0.002 (4) |
| C8 | 0.089 (6) | 0.080 (5) | 0.080 (5) | −0.011 (5) | −0.015 (5) | 0.012 (5) |
| C9 | 0.125 (8) | 0.079 (6) | 0.093 (6) | −0.005 (6) | −0.030 (6) | −0.001 (5) |
| C10 | 0.129 (10) | 0.077 (6) | 0.127 (9) | −0.017 (6) | −0.051 (8) | −0.007 (6) |
| C11 | 0.091 (7) | 0.078 (6) | 0.141 (9) | −0.024 (5) | −0.042 (7) | −0.001 (7) |
| C12 | 0.065 (5) | 0.081 (5) | 0.113 (6) | −0.011 (4) | −0.011 (5) | 0.003 (5) |
| O1—C7 | 1.344 (8) | C5—H5A | 0.9600 |
| O1—C1 | 1.422 (8) | C5—H5B | 0.9600 |
| O2—C2 | 1.400 (8) | C5—H5C | 0.9600 |
| O2—H2 | 0.8200 | C6—H6A | 0.9600 |
| N1—C3 | 1.422 (9) | C6—H6B | 0.9600 |
| N1—C4 | 1.464 (9) | C6—H6C | 0.9600 |
| N1—H1 | 0.9000 | C7—C8 | 1.388 (2) |
| C1—C2 | 1.475 (9) | C7—C12 | 1.388 (2) |
| C1—H1C | 0.9700 | C8—C9 | 1.388 (2) |
| C1—H1D | 0.9700 | C8—H8 | 0.9300 |
| C2—C3 | 1.497 (9) | C9—C10 | 1.388 (2) |
| C2—H2A | 0.9800 | C9—H9 | 0.9300 |
| C3—H3A | 0.9700 | C10—C11 | 1.323 (13) |
| C3—H3B | 0.9700 | C10—H10 | 0.9300 |
| C4—C5 | 1.490 (8) | C11—C12 | 1.388 (2) |
| C4—C6 | 1.490 (8) | C11—H11 | 0.9300 |
| C4—H4 | 0.9800 | C12—H12 | 0.9300 |
| C7—O1—C1 | 118.3 (6) | C4—C5—H5B | 109.5 |
| C2—O2—H2 | 109.5 | H5A—C5—H5B | 109.5 |
| C3—N1—C4 | 115.1 (6) | C4—C5—H5C | 109.5 |
| C3—N1—H1 | 107.1 | H5A—C5—H5C | 109.5 |
| C4—N1—H1 | 107.9 | H5B—C5—H5C | 109.5 |
| O1—C1—C2 | 107.1 (6) | C4—C6—H6A | 109.5 |
| O1—C1—H1C | 110.3 | C4—C6—H6B | 109.5 |
| C2—C1—H1C | 110.3 | H6A—C6—H6B | 109.5 |
| O1—C1—H1D | 110.3 | C4—C6—H6C | 109.5 |
| C2—C1—H1D | 110.3 | H6A—C6—H6C | 109.5 |
| H1C—C1—H1D | 108.6 | H6B—C6—H6C | 109.5 |
| O2—C2—C1 | 109.9 (6) | O1—C7—C8 | 124.3 (6) |
| O2—C2—C3 | 107.7 (6) | O1—C7—C12 | 114.6 (6) |
| C1—C2—C3 | 111.9 (6) | C8—C7—C12 | 121.1 (7) |
| O2—C2—H2A | 109.1 | C7—C8—C9 | 117.8 (7) |
| C1—C2—H2A | 109.1 | C7—C8—H8 | 121.1 |
| C3—C2—H2A | 109.1 | C9—C8—H8 | 121.1 |
| N1—C3—C2 | 110.2 (6) | C10—C9—C8 | 120.6 (8) |
| N1—C3—H3A | 109.6 | C10—C9—H9 | 119.7 |
| C2—C3—H3A | 109.6 | C8—C9—H9 | 119.7 |
| N1—C3—H3B | 109.6 | C11—C10—C9 | 120.4 (10) |
| C2—C3—H3B | 109.6 | C11—C10—H10 | 119.8 |
| H3A—C3—H3B | 108.1 | C9—C10—H10 | 119.8 |
| N1—C4—C5 | 107.6 (7) | C10—C11—C12 | 121.7 (10) |
| N1—C4—C6 | 110.6 (7) | C10—C11—H11 | 119.2 |
| C5—C4—C6 | 111.5 (10) | C12—C11—H11 | 119.2 |
| N1—C4—H4 | 109.0 | C11—C12—C7 | 118.4 (8) |
| C5—C4—H4 | 109.0 | C11—C12—H12 | 120.8 |
| C6—C4—H4 | 109.0 | C7—C12—H12 | 120.8 |
| C4—C5—H5A | 109.5 | ||
| C7—O1—C1—C2 | 169.4 (6) | C1—O1—C7—C12 | 179.0 (7) |
| O1—C1—C2—O2 | −70.2 (8) | O1—C7—C8—C9 | −178.9 (7) |
| O1—C1—C2—C3 | 170.2 (6) | C12—C7—C8—C9 | −0.6 (12) |
| C4—N1—C3—C2 | −167.4 (6) | C7—C8—C9—C10 | 0.9 (13) |
| O2—C2—C3—N1 | 60.3 (7) | C8—C9—C10—C11 | −1.5 (15) |
| C1—C2—C3—N1 | −178.9 (7) | C9—C10—C11—C12 | 1.9 (16) |
| C3—N1—C4—C5 | 170.6 (8) | C10—C11—C12—C7 | −1.6 (14) |
| C3—N1—C4—C6 | −67.4 (10) | O1—C7—C12—C11 | 179.4 (7) |
| C1—O1—C7—C8 | −2.6 (11) | C8—C7—C12—C11 | 0.9 (12) |
| H··· | ||||
| O2—H2···N1 | 0.82 | 2.31 | 2.760 (7) | 115 |
| N1—H1···O2i | 0.90 | 1.84 | 2.742 (7) | 179 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N1 | 0.82 | 2.31 | 2.760 (7) | 115 |
| N1—H1⋯O2i | 0.90 | 1.84 | 2.742 (7) | 179 |
Symmetry code: (i) .