Literature DB >> 22346967

2-[(2-Hy-droxy-eth-yl)aza-nium-yl]ethanaminium oxalate monohydrate.

Yu Jin1.   

Abstract

In the title hydrated mol-ecular salt, C(4)H(14)N(2)O(2+)·C(2)O(4) (2-)·H(2)O, the oxalate dianion is almost planar (r.m.s. deviation = 0.020 Å). In the crystal, the components are linked by N-H⋯O(water), N-H⋯O(oxalate) O-H(ammonium)⋯O(oxalate), O-H(water)⋯O(oxalate) and O-H(water)⋯O(ammonium) hydrogen bonds, thereby forming a complex three-dimensional packing motif.

Entities:  

Year:  2012        PMID: 22346967      PMCID: PMC3275022          DOI: 10.1107/S1600536811056157

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Sakai et al. (2003 ▶); Kolitsch (2004 ▶); Cotton et al. (1996 ▶); Barnes (2003 ▶).

Experimental

Crystal data

C4H14N2O2+·C2O4 2−·H2O M = 212.21 Monoclinic, a = 5.7311 (11) Å b = 13.136 (3) Å c = 6.7373 (13) Å β = 102.52 (3)° V = 495.16 (17) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.3 × 0.3 × 0.2 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.489, T max = 1.000 5068 measured reflections 2261 independent reflections 1853 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.086 S = 0.97 2261 reflections 135 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811056157/hb6584sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056157/hb6584Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811056157/hb6584Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H14N2O2+·C2O42·H2OF(000) = 228
Mr = 212.21Dx = 1.423 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3450 reflections
a = 5.7311 (11) Åθ = 6.2–55.3°
b = 13.136 (3) ŵ = 0.13 mm1
c = 6.7373 (13) ÅT = 293 K
β = 102.52 (3)°Block, colorless
V = 495.16 (17) Å30.3 × 0.3 × 0.2 mm
Z = 2
Rigaku Mercury CCD diffractometer2261 independent reflections
Radiation source: fine-focus sealed tube1853 reflections with I > 2σ(I)
graphiteRint = 0.046
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −7→7
Tmin = 0.489, Tmax = 1.000k = −16→16
5068 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 0.97w = 1/[σ2(Fo2) + (0.0314P)2] where P = (Fo2 + 2Fc2)/3
2261 reflections(Δ/σ)max < 0.001
135 parametersΔρmax = 0.22 e Å3
3 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.1138 (4)0.63105 (16)0.1821 (3)0.0342 (5)
H1D1.15200.59760.06480.041*
H1E1.07640.70170.14670.041*
C20.9023 (4)0.58091 (12)0.2350 (3)0.0290 (4)
H2B0.88080.60710.36440.035*
H2C0.76070.59800.13280.035*
C30.6935 (4)0.41905 (13)0.2318 (3)0.0256 (4)
H3A0.59150.43470.10070.031*
H3B0.61710.44520.33650.031*
C40.7217 (4)0.30554 (15)0.2545 (3)0.0284 (5)
H4A0.80620.27910.15550.034*
H4B0.81270.28880.38950.034*
C50.2891 (3)0.33640 (13)0.6829 (2)0.0213 (4)
C60.1213 (3)0.39951 (13)0.7871 (3)0.0234 (4)
H1W0.472 (5)0.541 (3)0.636 (3)0.117 (14)*
H2W0.702 (3)0.522 (2)0.723 (3)0.057 (9)*
N10.4808 (3)0.26039 (11)0.2219 (2)0.0244 (4)
H1A0.49310.19310.23510.037*
H1B0.39920.27580.09750.037*
H1F0.40480.28510.31340.037*
N20.9269 (3)0.46896 (11)0.2484 (2)0.0210 (3)
H2A0.99480.44650.14800.025*
H2D1.02350.45210.36780.025*
O11.3118 (3)0.62633 (11)0.3457 (2)0.0453 (4)
H1C1.41240.66790.32850.068*
O20.2737 (3)0.35255 (12)0.49926 (18)0.0391 (4)
O30.4216 (3)0.27372 (10)0.78762 (18)0.0320 (3)
O40.1307 (3)0.38042 (10)0.96855 (18)0.0333 (3)
O5−0.0084 (3)0.46250 (12)0.6815 (2)0.0429 (4)
O1W0.5752 (3)0.54801 (12)0.7448 (2)0.0425 (4)
U11U22U33U12U13U23
C10.0382 (13)0.0278 (9)0.0369 (10)−0.0049 (9)0.0084 (9)0.0046 (8)
C20.0263 (11)0.0223 (9)0.0374 (10)0.0008 (8)0.0044 (8)0.0020 (8)
C30.0216 (11)0.0251 (9)0.0314 (10)−0.0002 (8)0.0081 (8)−0.0009 (7)
C40.0241 (11)0.0250 (9)0.0375 (11)0.0007 (9)0.0102 (9)−0.0023 (8)
C50.0188 (10)0.0222 (8)0.0227 (8)−0.0017 (7)0.0045 (7)0.0004 (7)
C60.0231 (11)0.0248 (9)0.0220 (8)−0.0004 (8)0.0039 (8)−0.0028 (7)
N10.0279 (10)0.0218 (7)0.0242 (7)−0.0011 (7)0.0071 (7)0.0015 (6)
N20.0213 (9)0.0226 (7)0.0192 (7)0.0018 (7)0.0047 (6)0.0004 (6)
O10.0344 (9)0.0474 (9)0.0505 (9)−0.0138 (8)0.0015 (7)0.0129 (7)
O20.0393 (10)0.0576 (10)0.0234 (7)0.0198 (8)0.0138 (6)0.0067 (6)
O30.0358 (9)0.0320 (7)0.0290 (7)0.0148 (7)0.0086 (6)0.0043 (5)
O40.0371 (9)0.0424 (8)0.0234 (6)0.0127 (7)0.0128 (6)0.0031 (6)
O50.0495 (11)0.0490 (8)0.0305 (7)0.0281 (8)0.0091 (7)0.0080 (7)
O1W0.0448 (11)0.0345 (8)0.0478 (10)0.0076 (8)0.0091 (8)−0.0079 (7)
C1—O11.402 (2)C5—O31.233 (2)
C1—C21.489 (3)C5—O21.239 (2)
C1—H1D0.9700C5—C61.548 (3)
C1—H1E0.9700C6—O51.230 (2)
C2—N21.478 (2)C6—O41.238 (2)
C2—H2B0.9700N1—H1A0.8900
C2—H2C0.9700N1—H1B0.8900
C3—N21.472 (2)N1—H1F0.8900
C3—C41.504 (3)N2—H2A0.9000
C3—H3A0.9700N2—H2D0.9000
C3—H3B0.9700O1—H1C0.8200
C4—N11.475 (3)O1W—H1W0.838 (10)
C4—H4A0.9700O1W—H2W0.841 (10)
C4—H4B0.9700
O1—C1—C2110.75 (16)C3—C4—H4B110.1
O1—C1—H1D109.5H4A—C4—H4B108.4
C2—C1—H1D109.5O3—C5—O2125.95 (17)
O1—C1—H1E109.5O3—C5—C6117.66 (14)
C2—C1—H1E109.5O2—C5—C6116.37 (15)
H1D—C1—H1E108.1O5—C6—O4126.77 (19)
N2—C2—C1112.53 (17)O5—C6—C5117.06 (15)
N2—C2—H2B109.1O4—C6—C5116.18 (14)
C1—C2—H2B109.1C4—N1—H1A109.5
N2—C2—H2C109.1C4—N1—H1B109.5
C1—C2—H2C109.1H1A—N1—H1B109.5
H2B—C2—H2C107.8C4—N1—H1F109.5
N2—C3—C4110.98 (15)H1A—N1—H1F109.5
N2—C3—H3A109.4H1B—N1—H1F109.5
C4—C3—H3A109.4C3—N2—C2111.45 (14)
N2—C3—H3B109.4C3—N2—H2A109.3
C4—C3—H3B109.4C2—N2—H2A109.3
H3A—C3—H3B108.0C3—N2—H2D109.3
N1—C4—C3107.88 (16)C2—N2—H2D109.3
N1—C4—H4A110.1H2A—N2—H2D108.0
C3—C4—H4A110.1C1—O1—H1C109.5
N1—C4—H4B110.1H1W—O1W—H2W106 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1Wi0.891.962.823 (2)164
N1—H1B···O3ii0.892.122.8769 (19)143
N1—H1B···O4ii0.892.112.818 (2)136
N1—H1F···O20.891.822.707 (2)172
N2—H2A···O4iii0.901.802.688 (2)170
N2—H2D···O5iv0.902.162.862 (2)134
N2—H2D···O2iv0.902.002.773 (2)143
O1—H1C···O3v0.821.942.736 (2)163
O1W—H2W···O5iv0.84 (1)1.91 (1)2.753 (2)178 (2)
O1W—H1W···O1vi0.84 (1)2.27 (3)2.968 (2)141 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1Wi0.891.962.823 (2)164
N1—H1B⋯O3ii0.892.122.8769 (19)143
N1—H1B⋯O4ii0.892.112.818 (2)136
N1—H1F⋯O20.891.822.707 (2)172
N2—H2A⋯O4iii0.901.802.688 (2)170
N2—H2D⋯O5iv0.902.162.862 (2)134
N2—H2D⋯O2iv0.902.002.773 (2)143
O1—H1C⋯O3v0.821.942.736 (2)163
O1W—H2W⋯O5iv0.84 (1)1.91 (1)2.753 (2)178 (2)
O1W—H1W⋯O1vi0.84 (1)2.27 (3)2.968 (2)141 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  RbCr(III)(C2O4)2.2H2O, Cs2Mg(C2O4)(2).(-)4H2O and Rb2Cu(II)(C2O4)2.2H2O: three new complex oxalate hydrates.

Authors:  Uwe Kolitsch
Journal:  Acta Crystallogr C       Date:  2004-02-19       Impact factor: 1.172

  2 in total

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