Literature DB >> 22346964

3,12-Diaza-6,9-diazo-nia-2,13-dioxotetra-decane bis-(perchlorate).

Tilo Söhnel, Kathrin A Wichmann, Thomas Doert, Garth J S Cooper.   

Abstract

The crystal structure of the title diprotonated diacetyl-triethyl-ene-tetra-mine (DAT) perchorate salt, C(10)H(24)N(4)O(2) (2+)·2ClO(4) (-), can be described as a three-dimensional assembly of alternating layers consisting of diprotonated diacetyl-triethyl-ene-tetra-mine (H(2)DAT)(2+) strands along [100] and the anionic species ClO(4) (-). The (H(2)DAT)(2+) cations in the strands are connected via N-H⋯O hydrogen bonding between the acetyl groups and the amine groups of neighbouring (H(2)DAT)(2+) cations. Layers of (H(2)DAT)(2+) strands and perchlorate anions are connected by a network of hydrogen bonds between the NH and NH(2) groups and the O atoms of the perchlorate anion. The asymmetric unit consits of one perchlorate anion in a general position, as well as of one cation that is located on a center of inversion.

Entities:  

Year:  2012        PMID: 22346964      PMCID: PMC3275019          DOI: 10.1107/S1600536811055516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pharmaceutical chelating agents in the treatment of diabetes, see: Cooper et al. (2004 ▶); Gong et al. (2006 ▶, 2008 ▶); Jüllig et al. (2007 ▶); Lu et al. (2010 ▶). For the detection of a new group of TETA metabolites, see: Lu et al. (2007 ▶). For the preparation and characterization of DAT mono- and dihydro­chloride salts, see: Jonas et al. (2006 ▶); Wichmann et al. (2011 ▶). For related structures, see: Elaoud et al. (1999 ▶); Fu et al. (2005 ▶); Ilioudis et al. (2000 ▶, 2002 ▶); Ilioudis & Steed (2003 ▶); Wichmann et al. (2007 ▶).

Experimental

Crystal data

C10H24N4O2 2+·2ClO4 − M = 431.23 Monoclinic, a = 6.0888 (5) Å b = 10.9415 (9) Å c = 14.8160 (11) Å β = 110.846 (6)° V = 922.44 (13) Å3 Z = 2 Mo Kα radiation μ = 0.41 mm−1 T = 150 K 0.45 × 0.35 × 0.17 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical (X-RED32; Stoe & Cie, 2001 ▶) T min = 0.837, T max = 0.936 11528 measured reflections 2113 independent reflections 1624 reflections with I > 2σ(I) R int = 0.114

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.087 S = 1.03 2113 reflections 120 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.42 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: VESTA (Momma & Izumi, 2011 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055516/nc2261sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055516/nc2261Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H24N4O22+·2ClO4F(000) = 452
Mr = 431.23Dx = 1.553 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 12054 reflections
a = 6.0888 (5) Åθ = 4.7–59.0°
b = 10.9415 (9) ŵ = 0.41 mm1
c = 14.8160 (11) ÅT = 150 K
β = 110.846 (6)°Not regular, colourless
V = 922.44 (13) Å30.45 × 0.35 × 0.17 mm
Z = 2
Stoe IPDS II diffractometer2113 independent reflections
Radiation source: fine-focus sealed tube1624 reflections with I > 2σ(I)
graphiteRint = 0.114
Image plate detector scansθmax = 27.5°, θmin = 2.4°
Absorption correction: numerical (X-RED32; Stoe & Cie, 2001)h = −7→6
Tmin = 0.837, Tmax = 0.936k = −14→14
11528 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0435P)2 + 0.0412P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2113 reflectionsΔρmax = 0.38 e Å3
120 parametersΔρmin = −0.42 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0082 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7492 (2)−0.27758 (14)0.49858 (8)0.0292 (3)
N30.4849 (2)−0.35281 (14)0.55667 (8)0.0203 (3)
H30.4552−0.37830.60750.030*
N60.1286 (2)−0.15588 (13)0.49690 (8)0.0180 (3)
H6A0.0102−0.20080.50580.027*
H6B0.2493−0.14970.55560.027*
C10.8854 (3)−0.3315 (2)0.66635 (12)0.0306 (4)
H1A0.9869−0.40130.66690.046*
H1B0.8082−0.34550.71330.046*
H1C0.9805−0.25700.68350.046*
C20.7025 (3)−0.31761 (17)0.56731 (10)0.0212 (3)
C40.2944 (3)−0.35009 (17)0.46258 (10)0.0218 (4)
H4A0.1589−0.39650.46680.033*
H4B0.3476−0.39140.41450.033*
C50.2149 (3)−0.22157 (17)0.42777 (10)0.0211 (3)
H5A0.3478−0.17570.42050.032*
H5B0.0875−0.22550.36370.032*
C70.0392 (3)−0.03159 (17)0.46280 (11)0.0230 (4)
H7A−0.0947−0.03760.40080.035*
H7B0.16470.01690.45180.035*
Cl10.43802 (6)−0.55724 (4)0.77065 (2)0.02264 (14)
O20.4296 (2)−0.55967 (14)0.86654 (8)0.0337 (3)
O30.2285 (3)−0.60503 (17)0.70295 (10)0.0478 (4)
O40.4650 (3)−0.43253 (15)0.74660 (10)0.0461 (4)
O50.6382 (3)−0.62675 (18)0.77258 (10)0.0507 (5)
U11U22U33U12U13U23
O10.0253 (6)0.0377 (9)0.0282 (5)−0.0049 (6)0.0139 (5)−0.0020 (5)
N30.0192 (6)0.0211 (8)0.0200 (6)0.0012 (6)0.0062 (5)0.0024 (5)
N60.0164 (6)0.0183 (7)0.0180 (5)0.0012 (6)0.0044 (4)0.0009 (5)
C10.0222 (8)0.0346 (12)0.0290 (8)0.0027 (8)0.0020 (6)0.0014 (8)
C20.0204 (7)0.0180 (9)0.0251 (7)0.0018 (7)0.0081 (6)−0.0024 (6)
C40.0192 (7)0.0211 (9)0.0226 (7)−0.0001 (7)0.0041 (5)−0.0031 (6)
C50.0214 (7)0.0231 (9)0.0185 (6)0.0032 (7)0.0069 (5)0.0001 (6)
C70.0251 (8)0.0201 (9)0.0265 (7)0.0083 (7)0.0124 (6)0.0060 (6)
Cl10.0200 (2)0.0276 (2)0.01913 (18)0.00163 (17)0.00557 (13)0.00246 (15)
O20.0382 (7)0.0424 (9)0.0237 (6)0.0036 (7)0.0150 (5)0.0075 (5)
O30.0355 (8)0.0518 (11)0.0400 (7)−0.0072 (8)−0.0063 (6)−0.0065 (7)
O40.0564 (9)0.0378 (10)0.0441 (7)−0.0072 (8)0.0180 (7)0.0166 (7)
O50.0381 (8)0.0661 (13)0.0463 (8)0.0256 (8)0.0130 (6)−0.0092 (8)
O1—C21.231 (2)C4—C51.517 (2)
N3—C21.334 (2)C4—H4A0.9900
N3—C41.4622 (17)C4—H4B0.9900
N3—H30.8800C5—H5A0.9900
N6—C71.485 (2)C5—H5B0.9900
N6—C51.492 (2)C7—C7i1.515 (3)
N6—H6A0.9200C7—H7A0.9900
N6—H6B0.9200C7—H7B0.9900
C1—C21.501 (2)Cl1—O31.4129 (13)
C1—H1A0.9800Cl1—O51.4284 (15)
C1—H1B0.9800Cl1—O41.4344 (16)
C1—H1C0.9800Cl1—O21.4401 (12)
C2—N3—C4121.60 (13)N3—C4—H4B109.0
C2—N3—H3119.2C5—C4—H4B109.0
C4—N3—H3119.2H4A—C4—H4B107.8
C7—N6—C5112.56 (12)N6—C5—C4111.17 (13)
C7—N6—H6A109.1N6—C5—H5A109.4
C5—N6—H6A109.1C4—C5—H5A109.4
C7—N6—H6B109.1N6—C5—H5B109.4
C5—N6—H6B109.1C4—C5—H5B109.4
H6A—N6—H6B107.8H5A—C5—H5B108.0
C2—C1—H1A109.5N6—C7—C7i110.03 (16)
C2—C1—H1B109.5N6—C7—H7A109.7
H1A—C1—H1B109.5C7i—C7—H7A109.7
C2—C1—H1C109.5N6—C7—H7B109.7
H1A—C1—H1C109.5C7i—C7—H7B109.7
H1B—C1—H1C109.5H7A—C7—H7B108.2
O1—C2—N3121.11 (13)O3—Cl1—O5111.45 (11)
O1—C2—C1122.39 (15)O3—Cl1—O4109.27 (10)
N3—C2—C1116.49 (14)O5—Cl1—O4109.82 (11)
N3—C4—C5113.08 (13)O3—Cl1—O2110.69 (9)
N3—C4—H4A109.0O5—Cl1—O2107.47 (8)
C5—C4—H4A109.0O4—Cl1—O2108.06 (10)
D—H···AD—HH···AD···AD—H···A
N3—H3···O40.882.122.989 (2)167
N6—H6A···O1ii0.921.772.6745 (19)168
N6—H6B···O2iii0.922.132.9265 (17)145
N6—H6B···O5iii0.922.403.2141 (19)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O40.882.122.989 (2)167
N6—H6A⋯O1i0.921.772.6745 (19)168
N6—H6B⋯O2ii0.922.132.9265 (17)145
N6—H6B⋯O5ii0.922.403.2141 (19)147

Symmetry codes: (i) ; (ii) .

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