Literature DB >> 22346957

2,4-Dibromo-6-[(E)-({3-[(E)-(3,5-dibromo-2-oxidobenzyl-idene)aza-nium-yl]-2,2-dimethyl-prop-yl}iminium-yl)meth-yl]phenolate.

Hadi Kargar, Reza Kia, Mahbubeh Haghshenas, Muhammad Nawaz Tahir.   

Abstract

In the title mol-ecule, C(19)H(18)Br(4)N(2)O(2), the dihedral angle between the benzene rings is 73.9 (2)°. Two intra-molecular N-H⋯O hydrogen bonds make S(6) ring motifs. In the crystal, mol-ecules are linked via C-H⋯O inter-actions, forming chains propagating along the a-axis directon. A short C⋯Br [3.401 (5) Å] contact is present in the crystal structure, which is further stabilized by a π-π inter-action [centroid-centroid distance = 3.739 (3) Å].

Entities:  

Year:  2012        PMID: 22346957      PMCID: PMC3275012          DOI: 10.1107/S1600536811055899

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond lengths, see: Allen et al. (1987 ▶). For hydrogen bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Kargar et al. (2011 ▶); Kia et al. (2010 ▶).

Experimental

Crystal data

C19H18Br4N2O M = 625.99 Orthorhombic, a = 11.6861 (3) Å b = 11.4616 (3) Å c = 31.3782 (9) Å V = 4202.8 (2) Å3 Z = 8 Mo Kα radiation μ = 7.68 mm−1 T = 291 K 0.25 × 0.16 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.250, T max = 0.459 38547 measured reflections 5242 independent reflections 2756 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.138 S = 1.04 5242 reflections 246 parameters H-atom parameters constrained Δρmax = 0.73 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055899/su2354sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055899/su2354Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18Br4N2OF(000) = 2416
Mr = 625.99Dx = 1.979 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2370 reflections
a = 11.6861 (3) Åθ = 2.5–27.5°
b = 11.4616 (3) ŵ = 7.68 mm1
c = 31.3782 (9) ÅT = 291 K
V = 4202.8 (2) Å3Block, yellow
Z = 80.25 × 0.16 × 0.12 mm
Bruker SMART APEXII CCD area-detector diffractometer5242 independent reflections
Radiation source: fine-focus sealed tube2756 reflections with I > 2σ(I)
graphiteRint = 0.090
φ and ω scansθmax = 28.4°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −15→15
Tmin = 0.250, Tmax = 0.459k = −15→15
38547 measured reflectionsl = −41→41
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0616P)2] where P = (Fo2 + 2Fc2)/3
5242 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.73 e Å3
0 restraintsΔρmin = −0.64 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.34182 (5)−0.30064 (6)0.37158 (2)0.0653 (2)
Br20.17302 (6)0.00225 (6)0.49759 (2)0.0695 (2)
Br30.32582 (5)0.27233 (8)0.11028 (2)0.0748 (3)
Br4−0.02936 (5)0.17726 (6)−0.006978 (18)0.0531 (2)
O10.1272 (3)−0.2212 (3)0.32548 (12)0.0456 (9)
O20.1731 (3)0.1290 (3)0.16822 (12)0.0493 (10)
N1−0.0616 (3)−0.1131 (4)0.31559 (14)0.0399 (11)
H1−0.0092−0.16010.30810.048*
N20.0054 (3)−0.0002 (3)0.18846 (14)0.0401 (11)
H20.06810.03640.19300.048*
C10.0493 (4)−0.0982 (4)0.37894 (16)0.0339 (11)
C20.1341 (4)−0.1743 (4)0.36298 (16)0.0348 (12)
C30.2273 (4)−0.1966 (4)0.39035 (17)0.0399 (13)
C40.2376 (4)−0.1472 (5)0.42992 (17)0.0430 (13)
H40.3002−0.16450.44710.052*
C50.1525 (4)−0.0701 (5)0.44416 (17)0.0417 (13)
C60.0597 (4)−0.0475 (4)0.41923 (17)0.0398 (13)
H60.00260.00220.42910.048*
C7−0.0502 (4)−0.0723 (5)0.35284 (17)0.0396 (13)
H7−0.1072−0.02430.36380.047*
C8−0.1584 (4)−0.0846 (5)0.28844 (17)0.0422 (13)
H8A−0.2174−0.04780.30550.051*
H8B−0.1899−0.15600.27670.051*
C9−0.1256 (4)−0.0031 (4)0.25192 (16)0.0351 (12)
C10−0.0651 (4)0.1058 (4)0.26898 (17)0.0438 (13)
H10A−0.10970.13920.29160.066*
H10B−0.05680.16180.24640.066*
H10C0.00900.08480.27960.066*
C11−0.2360 (4)0.0326 (5)0.22920 (19)0.0528 (16)
H11A−0.2745−0.03590.21890.079*
H11B−0.21800.08270.20560.079*
H11C−0.28490.07320.24880.079*
C12−0.0487 (4)−0.0721 (5)0.22116 (17)0.0444 (13)
H12A0.0105−0.11110.23750.053*
H12B−0.0943−0.13180.20730.053*
C13−0.0332 (4)0.0110 (4)0.15044 (17)0.0379 (12)
H13−0.1005−0.02710.14290.045*
C140.0254 (4)0.0815 (4)0.11903 (15)0.0338 (11)
C150.1304 (4)0.1368 (4)0.13050 (17)0.0365 (12)
C160.1851 (4)0.2010 (5)0.09768 (18)0.0407 (13)
C170.1389 (4)0.2107 (4)0.05729 (17)0.0412 (13)
H170.17760.25220.03630.049*
C180.0336 (4)0.1579 (4)0.04800 (15)0.0354 (11)
C19−0.0218 (4)0.0939 (4)0.07783 (16)0.0365 (12)
H19−0.09090.05800.07120.044*
U11U22U33U12U13U23
Br10.0620 (4)0.0651 (4)0.0688 (5)0.0276 (3)−0.0133 (3)−0.0081 (4)
Br20.0780 (5)0.0835 (5)0.0470 (4)−0.0080 (4)−0.0106 (3)−0.0238 (3)
Br30.0533 (4)0.1174 (6)0.0537 (4)−0.0359 (4)0.0020 (3)0.0015 (4)
Br40.0591 (4)0.0723 (4)0.0279 (3)0.0027 (3)−0.0031 (3)0.0027 (3)
O10.056 (2)0.048 (2)0.033 (2)0.0070 (18)−0.0035 (18)−0.0054 (18)
O20.043 (2)0.071 (3)0.034 (2)−0.0015 (18)−0.0082 (18)0.008 (2)
N10.037 (2)0.051 (3)0.032 (3)0.0050 (19)0.001 (2)0.005 (2)
N20.040 (2)0.046 (3)0.035 (3)0.0020 (19)0.007 (2)0.008 (2)
C10.039 (3)0.034 (3)0.029 (3)−0.001 (2)0.002 (2)0.007 (2)
C20.044 (3)0.030 (3)0.031 (3)−0.004 (2)−0.002 (2)0.008 (2)
C30.042 (3)0.033 (3)0.044 (4)−0.001 (2)−0.005 (3)0.007 (3)
C40.043 (3)0.048 (3)0.038 (3)−0.004 (3)−0.008 (3)0.002 (3)
C50.053 (3)0.043 (3)0.029 (3)−0.010 (3)−0.004 (3)−0.001 (2)
C60.046 (3)0.040 (3)0.033 (3)−0.001 (2)0.004 (3)0.001 (3)
C70.046 (3)0.040 (3)0.033 (3)0.003 (2)0.008 (3)0.007 (2)
C80.035 (3)0.060 (4)0.032 (3)−0.003 (3)−0.005 (2)0.010 (3)
C90.030 (2)0.048 (3)0.028 (3)0.002 (2)0.003 (2)0.010 (2)
C100.046 (3)0.049 (3)0.037 (3)−0.001 (3)0.003 (3)0.006 (3)
C110.036 (3)0.077 (4)0.045 (4)−0.001 (3)−0.005 (3)0.021 (3)
C120.052 (3)0.048 (3)0.033 (3)0.001 (3)0.004 (3)0.011 (3)
C130.041 (3)0.037 (3)0.036 (3)−0.005 (2)0.000 (3)−0.001 (2)
C140.040 (3)0.037 (3)0.024 (3)0.005 (2)0.003 (2)−0.005 (2)
C150.033 (3)0.038 (3)0.039 (3)0.002 (2)0.001 (2)−0.004 (3)
C160.036 (3)0.050 (3)0.036 (3)−0.006 (2)0.005 (2)−0.002 (3)
C170.046 (3)0.044 (3)0.033 (3)0.003 (3)0.012 (3)0.005 (3)
C180.046 (3)0.039 (3)0.022 (3)0.005 (2)0.000 (2)−0.005 (2)
C190.035 (3)0.043 (3)0.031 (3)−0.001 (2)0.000 (2)−0.006 (2)
Br1—C31.887 (5)C8—H8A0.9700
Br2—C51.886 (5)C8—H8B0.9700
Br3—C161.879 (5)C9—C111.530 (7)
Br4—C181.889 (5)C9—C101.531 (7)
O1—C21.296 (6)C9—C121.538 (7)
O2—C151.287 (6)C10—H10A0.9600
N1—C71.266 (6)C10—H10B0.9600
N1—C81.453 (6)C10—H10C0.9600
N1—H10.8479C11—H11A0.9600
N2—C131.282 (6)C11—H11B0.9600
N2—C121.460 (6)C11—H11C0.9600
N2—H20.8557C12—H12A0.9700
C1—C61.397 (7)C12—H12B0.9700
C1—C21.412 (7)C13—C141.447 (7)
C1—C71.454 (7)C13—H130.9300
C2—C31.410 (7)C14—C191.412 (7)
C3—C41.370 (7)C14—C151.427 (7)
C4—C51.403 (7)C15—C161.418 (7)
C4—H40.9300C16—C171.382 (7)
C5—C61.363 (7)C17—C181.402 (7)
C6—H60.9300C17—H170.9300
C7—H70.9300C18—C191.354 (7)
C8—C91.527 (7)C19—H190.9300
C7—N1—C8122.6 (5)C9—C10—H10A109.5
C7—N1—H1114.5C9—C10—H10B109.5
C8—N1—H1122.9H10A—C10—H10B109.5
C13—N2—C12123.9 (5)C9—C10—H10C109.5
C13—N2—H2114.0H10A—C10—H10C109.5
C12—N2—H2122.1H10B—C10—H10C109.5
C6—C1—C2121.2 (5)C9—C11—H11A109.5
C6—C1—C7119.6 (5)C9—C11—H11B109.5
C2—C1—C7119.2 (5)H11A—C11—H11B109.5
O1—C2—C3121.8 (5)C9—C11—H11C109.5
O1—C2—C1122.3 (5)H11A—C11—H11C109.5
C3—C2—C1115.9 (5)H11B—C11—H11C109.5
C4—C3—C2123.1 (5)N2—C12—C9113.8 (4)
C4—C3—Br1118.8 (4)N2—C12—H12A108.8
C2—C3—Br1118.1 (4)C9—C12—H12A108.8
C3—C4—C5119.1 (5)N2—C12—H12B108.8
C3—C4—H4120.4C9—C12—H12B108.8
C5—C4—H4120.4H12A—C12—H12B107.7
C6—C5—C4120.1 (5)N2—C13—C14121.5 (5)
C6—C5—Br2121.9 (4)N2—C13—H13119.2
C4—C5—Br2118.0 (4)C14—C13—H13119.2
C5—C6—C1120.6 (5)C19—C14—C15121.5 (5)
C5—C6—H6119.7C19—C14—C13119.6 (5)
C1—C6—H6119.7C15—C14—C13118.9 (5)
N1—C7—C1121.9 (5)O2—C15—C16121.9 (5)
N1—C7—H7119.1O2—C15—C14122.3 (5)
C1—C7—H7119.1C16—C15—C14115.8 (5)
N1—C8—C9112.5 (4)C17—C16—C15122.1 (5)
N1—C8—H8A109.1C17—C16—Br3120.0 (4)
C9—C8—H8A109.1C15—C16—Br3117.9 (4)
N1—C8—H8B109.1C16—C17—C18119.9 (5)
C9—C8—H8B109.1C16—C17—H17120.0
H8A—C8—H8B107.8C18—C17—H17120.0
C8—C9—C11107.5 (4)C19—C18—C17120.7 (5)
C8—C9—C10110.6 (4)C19—C18—Br4120.6 (4)
C11—C9—C10109.6 (4)C17—C18—Br4118.8 (4)
C8—C9—C12107.6 (4)C18—C19—C14120.0 (5)
C11—C9—C12109.7 (4)C18—C19—H19120.0
C10—C9—C12111.7 (4)C14—C19—H19120.0
C6—C1—C2—O1−179.0 (4)C13—N2—C12—C9−97.7 (6)
C7—C1—C2—O10.9 (7)C8—C9—C12—N2−170.1 (4)
C6—C1—C2—C31.0 (7)C11—C9—C12—N273.2 (5)
C7—C1—C2—C3−179.1 (4)C10—C9—C12—N2−48.5 (6)
O1—C2—C3—C4179.1 (5)C12—N2—C13—C14−178.6 (4)
C1—C2—C3—C4−0.9 (7)N2—C13—C14—C19−178.4 (5)
O1—C2—C3—Br1−1.6 (6)N2—C13—C14—C151.9 (7)
C1—C2—C3—Br1178.4 (3)C19—C14—C15—O2178.1 (5)
C2—C3—C4—C5−0.4 (8)C13—C14—C15—O2−2.2 (7)
Br1—C3—C4—C5−179.7 (4)C19—C14—C15—C16−1.9 (7)
C3—C4—C5—C61.7 (8)C13—C14—C15—C16177.8 (4)
C3—C4—C5—Br2−177.0 (4)O2—C15—C16—C17−179.2 (5)
C4—C5—C6—C1−1.5 (8)C14—C15—C16—C170.8 (7)
Br2—C5—C6—C1177.0 (4)O2—C15—C16—Br31.7 (7)
C2—C1—C6—C50.2 (8)C14—C15—C16—Br3−178.3 (3)
C7—C1—C6—C5−179.7 (5)C15—C16—C17—C181.2 (8)
C8—N1—C7—C1−177.6 (4)Br3—C16—C17—C18−179.7 (4)
C6—C1—C7—N1177.6 (5)C16—C17—C18—C19−2.3 (8)
C2—C1—C7—N1−2.2 (7)C16—C17—C18—Br4177.9 (4)
C7—N1—C8—C9107.5 (6)C17—C18—C19—C141.2 (7)
N1—C8—C9—C11−173.0 (5)Br4—C18—C19—C14−179.0 (4)
N1—C8—C9—C10−53.4 (6)C15—C14—C19—C181.0 (7)
N1—C8—C9—C1268.8 (6)C13—C14—C19—C18−178.7 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.851.822.549 (5)142
N2—H2···O20.861.802.537 (5)143
C8—H8A···O2i0.972.533.424 (7)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.851.822.549 (5)142
N2—H2⋯O20.861.802.537 (5)143
C8—H8A⋯O2i0.972.533.424 (7)152

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5,5'-Bis(diethyl-amino)-2,2'-[2,2-di-methyl-propane-1,3-diylbis-(nitrilo-methylidyne)]diphenol.

Authors:  Reza Kia; Hadi Kargar; Muhammad Nawaz Tahir; Fatemeh Kianoosh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  4,4'-Dimeth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methanylyl-idene)]diphenol.

Authors:  Hadi Kargar; Reza Kia; Elham Pahlavani; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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