Literature DB >> 22346937

Morpholin-4-ium hydrogen l-tartrate monohydrate.

T Kishore Kumar, D Prem Anand, S Selvakumar, S Pandi, M Nizammohideen.   

Abstract

In the title compound, C(4)H(10)NO(+)·C(4)H(5)O(6) (-)·H(2)O, the morpholine ring adopts a chair conformation. In the crystal, the tartrate anions are linked via O-H⋯O hydrogen bonds, forming chains propagating along [101]. These chains are linked via N-H⋯O and O-H⋯O hydrogen bonds, involving the morpholinium cation and the water molecule, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22346937      PMCID: PMC3274992          DOI: 10.1107/S1600536811055620

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of morpholine derivatives, see: Lan et al. (2010 ▶); Raparti et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For related studies on co-crystals of amino derivatives, see: Fu et al. (2010 ▶); Aminabhavi et al. (1986 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶) and for asymmetry parameters, see: Nardelli (1983 ▶).

Experimental

Crystal data

C4H10NO+·C4H5O6 −·H2O M = 255.23 Triclinic, a = 7.6260 (3) Å b = 8.2408 (3) Å c = 10.1674 (4) Å α = 98.462 (1)° β = 106.282 (1)° γ = 104.807 (1)° V = 576.25 (4) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.968, T max = 0.974 15849 measured reflections 3977 independent reflections 3218 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.113 S = 1.05 3977 reflections 182 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055620/lx2207sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055620/lx2207Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO+·C4H5O6·H2OZ = 2
Mr = 255.23F(000) = 272
Triclinic, P1Dx = 1.471 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6260 (3) ÅCell parameters from 6973 reflections
b = 8.2408 (3) Åθ = 2.6–31.9°
c = 10.1674 (4) ŵ = 0.13 mm1
α = 98.462 (1)°T = 293 K
β = 106.282 (1)°Block, colourless
γ = 104.807 (1)°0.25 × 0.20 × 0.20 mm
V = 576.25 (4) Å3
Bruker Kappa APEXII CCD diffractometer3977 independent reflections
Radiation source: fine-focus sealed tube3218 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 10.0 pixels mm-1θmax = 32.0°, θmin = 2.2°
ω and φ scanh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −12→12
Tmin = 0.968, Tmax = 0.974l = −15→15
15849 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: difference Fourier map
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0609P)2 + 0.0699P] where P = (Fo2 + 2Fc2)/3
3977 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.94402 (12)0.37187 (11)0.27498 (9)0.04274 (19)
O20.97405 (10)0.21983 (10)0.43867 (8)0.03730 (17)
H2A1.078 (3)0.201 (2)0.4093 (18)0.070 (5)*
O30.64815 (10)0.44948 (8)0.32017 (7)0.02986 (15)
H3A0.614 (2)0.529 (2)0.3718 (16)0.055 (4)*
O40.49940 (9)0.07745 (8)0.24744 (7)0.02624 (14)
H4A0.435 (2)0.1291 (19)0.1931 (16)0.046 (4)*
O50.46940 (10)0.30910 (9)0.56376 (7)0.03325 (16)
O60.24385 (10)0.16066 (12)0.35901 (9)0.0434 (2)
O70.27079 (16)0.18179 (14)0.03248 (8)0.0589 (3)
N10.13637 (14)0.33402 (11)−0.18924 (9)0.03416 (18)
H1A0.009 (3)0.299 (2)−0.2159 (17)0.058 (4)*
H1B0.171 (2)0.406 (2)−0.2372 (17)0.054 (4)*
C10.89145 (11)0.31305 (11)0.36407 (9)0.02589 (17)
C20.72471 (11)0.34681 (10)0.40548 (9)0.02281 (15)
H20.77310.41030.50440.027*
C30.56984 (11)0.17709 (10)0.38751 (8)0.02054 (15)
H30.62950.11050.44830.025*
C40.41269 (11)0.21858 (11)0.44055 (9)0.02372 (16)
C50.18699 (19)0.08025 (15)−0.10810 (11)0.0423 (2)
H5A0.05030.0270−0.12830.051*
H5B0.2445−0.0110−0.11890.051*
C60.21726 (18)0.18979 (14)−0.20995 (11)0.0403 (2)
H6A0.35360.2358−0.19490.048*
H6B0.15440.1202−0.30580.048*
C70.21262 (16)0.43291 (14)−0.04050 (12)0.0405 (2)
H7A0.14710.5177−0.02850.049*
H7B0.34870.4936−0.01520.049*
C80.1826 (2)0.31178 (19)0.05380 (12)0.0536 (3)
H8A0.23770.37590.15150.064*
H8B0.04600.25820.03350.064*
O1W−0.25124 (12)0.25085 (11)−0.22673 (10)0.0442 (2)
H1W−0.305 (3)0.152 (3)−0.2239 (19)0.066 (5)*
H2W−0.323 (3)0.282 (2)−0.2912 (19)0.061 (5)*
U11U22U33U12U13U23
O10.0447 (4)0.0499 (4)0.0573 (5)0.0244 (4)0.0374 (4)0.0259 (4)
O20.0257 (3)0.0513 (4)0.0468 (4)0.0201 (3)0.0188 (3)0.0194 (3)
O30.0370 (3)0.0253 (3)0.0389 (3)0.0157 (3)0.0226 (3)0.0119 (3)
O40.0260 (3)0.0244 (3)0.0279 (3)0.0086 (2)0.0094 (2)0.0027 (2)
O50.0347 (3)0.0436 (4)0.0309 (3)0.0223 (3)0.0166 (3)0.0079 (3)
O60.0206 (3)0.0625 (5)0.0465 (4)0.0161 (3)0.0121 (3)0.0031 (4)
O70.0882 (7)0.0764 (6)0.0274 (4)0.0622 (6)0.0101 (4)0.0106 (4)
N10.0375 (4)0.0333 (4)0.0352 (4)0.0091 (3)0.0161 (3)0.0145 (3)
C10.0193 (3)0.0254 (4)0.0323 (4)0.0047 (3)0.0118 (3)0.0026 (3)
C20.0206 (3)0.0224 (3)0.0268 (4)0.0063 (3)0.0115 (3)0.0035 (3)
C30.0182 (3)0.0220 (3)0.0251 (4)0.0085 (3)0.0104 (3)0.0067 (3)
C40.0216 (3)0.0270 (4)0.0307 (4)0.0122 (3)0.0143 (3)0.0118 (3)
C50.0605 (7)0.0408 (5)0.0332 (5)0.0254 (5)0.0166 (5)0.0122 (4)
C60.0553 (6)0.0387 (5)0.0340 (5)0.0172 (5)0.0235 (5)0.0083 (4)
C70.0359 (5)0.0382 (5)0.0445 (6)0.0134 (4)0.0125 (4)−0.0005 (4)
C80.0798 (9)0.0697 (8)0.0315 (5)0.0532 (7)0.0212 (5)0.0137 (5)
O1W0.0343 (4)0.0367 (4)0.0501 (5)0.0037 (3)0.0014 (3)0.0144 (4)
O1—C11.2041 (11)C2—C31.5310 (11)
O2—C11.3089 (11)C2—H20.9800
O2—H2A0.958 (19)C3—C41.5367 (11)
O3—C21.4119 (10)C3—H30.9800
O3—H3A0.911 (17)C5—C61.4976 (15)
O4—C31.4115 (10)C5—H5A0.9700
O4—H4A0.868 (16)C5—H5B0.9700
O5—C41.2526 (11)C6—H6A0.9700
O6—C41.2425 (11)C6—H6B0.9700
O7—C51.4192 (14)C7—C81.5019 (18)
O7—C81.4239 (14)C7—H7A0.9700
N1—C71.4803 (14)C7—H7B0.9700
N1—C61.4872 (14)C8—H8A0.9700
N1—H1A0.888 (18)C8—H8B0.9700
N1—H1B0.856 (17)O1W—H1W0.825 (19)
C1—C21.5224 (11)O1W—H2W0.848 (19)
C1—O2—H2A110.4 (11)O5—C4—C3115.75 (7)
C2—O3—H3A110.2 (10)O7—C5—C6110.47 (10)
C3—O4—H4A109.1 (10)O7—C5—H5A109.6
C5—O7—C8110.99 (9)C6—C5—H5A109.6
C7—N1—C6111.80 (8)O7—C5—H5B109.6
C7—N1—H1A108.3 (11)C6—C5—H5B109.6
C6—N1—H1A113.0 (11)H5A—C5—H5B108.1
C7—N1—H1B106.1 (10)N1—C6—C5109.55 (8)
C6—N1—H1B109.1 (11)N1—C6—H6A109.8
H1A—N1—H1B108.3 (15)C5—C6—H6A109.8
O1—C1—O2124.30 (8)N1—C6—H6B109.8
O1—C1—C2122.71 (8)C5—C6—H6B109.8
O2—C1—C2112.95 (7)H6A—C6—H6B108.2
O3—C2—C1108.22 (7)N1—C7—C8109.64 (9)
O3—C2—C3110.63 (6)N1—C7—H7A109.7
C1—C2—C3110.96 (6)C8—C7—H7A109.7
O3—C2—H2109.0N1—C7—H7B109.7
C1—C2—H2109.0C8—C7—H7B109.7
C3—C2—H2109.0H7A—C7—H7B108.2
O4—C3—C2111.41 (6)O7—C8—C7110.28 (10)
O4—C3—C4113.65 (6)O7—C8—H8A109.6
C2—C3—C4108.61 (6)C7—C8—H8A109.6
O4—C3—H3107.6O7—C8—H8B109.6
C2—C3—H3107.6C7—C8—H8B109.6
C4—C3—H3107.6H8A—C8—H8B108.1
O6—C4—O5126.30 (8)H1W—O1W—H2W110.3 (17)
O6—C4—C3117.95 (8)
O1—C1—C2—O31.65 (12)C2—C3—C4—O6125.59 (9)
O2—C1—C2—O3179.30 (7)O4—C3—C4—O5−178.95 (7)
O1—C1—C2—C3123.19 (9)C2—C3—C4—O5−54.34 (9)
O2—C1—C2—C3−59.15 (10)C8—O7—C5—C662.14 (15)
O3—C2—C3—O462.09 (8)C7—N1—C6—C553.29 (13)
C1—C2—C3—O4−58.03 (8)O7—C5—C6—N1−56.83 (13)
O3—C2—C3—C4−63.83 (8)C6—N1—C7—C8−53.28 (12)
C1—C2—C3—C4176.05 (7)C5—O7—C8—C7−61.96 (16)
O4—C3—C4—O60.98 (11)N1—C7—C8—O756.73 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O3i0.856 (17)2.036 (17)2.8430 (11)156.6 (15)
N1—H1A···O1W0.888 (18)1.888 (18)2.7583 (13)166.1 (16)
O1W—H1W···O4ii0.825 (19)2.013 (19)2.8173 (11)164.6 (18)
O1W—H2W···O5iii0.848 (19)1.921 (19)2.7542 (11)167.2 (17)
O2—H2A···O6iv0.958 (19)1.584 (19)2.5412 (10)177.3 (17)
O3—H3A···O5v0.911 (17)1.742 (17)2.6398 (9)167.9 (15)
O4—H4A···O70.868 (16)1.939 (16)2.7818 (10)163.4 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O3i0.856 (17)2.036 (17)2.8430 (11)156.6 (15)
N1—H1A⋯O1W0.888 (18)1.888 (18)2.7583 (13)166.1 (16)
O1W—H1W⋯O4ii0.825 (19)2.013 (19)2.8173 (11)164.6 (18)
O1W—H2W⋯O5iii0.848 (19)1.921 (19)2.7542 (11)167.2 (17)
O2—H2A⋯O6iv0.958 (19)1.584 (19)2.5412 (10)177.3 (17)
O3—H3A⋯O5v0.911 (17)1.742 (17)2.6398 (9)167.9 (15)
O4—H4A⋯O70.868 (16)1.939 (16)2.7818 (10)163.4 (14)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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