Literature DB >> 22346922

1,5-Bis[(2-meth-oxy-eth-oxy)meth-yl]-1,5-naphthyridine-4,8(1H,5H)-dione.

Kunyan Wang1, Chen Chen, Peng Jiang, Lu Shi, Hong-Jun Zhu.   

Abstract

The complete mol-ecule of the title compound, C(16)H(22)N(2)O(6), is generated by crystallographic inversion symmetry. The conformation of the N-C-O-C fragment of the side chain is approximately gauche [torsion angle = -74.84 (17)°]. In the crystal, weak C-H⋯O inter-actions link the mol-ecules.

Entities:  

Year:  2012        PMID: 22346922      PMCID: PMC3274977          DOI: 10.1107/S1600536811054547

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The background to the applications of the title compound, see: Shan et al. (2005 ▶). For the synthesis, see: Toshihiro et al. (2002 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H22N2O6 M = 338.36 Monoclinic, a = 7.1610 (14) Å b = 11.497 (2) Å c = 10.734 (2) Å β = 105.45 (3)° V = 851.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.970, T max = 0.990 3261 measured reflections 1549 independent reflections 1246 reflections with I > 2σ(I) R int = 0.047 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.140 S = 1.01 1549 reflections 110 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054547/hb6550sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054547/hb6550Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054547/hb6550Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22N2O6F(000) = 360
Mr = 338.36Dx = 1.319 Mg m3
Monoclinic, P21/nMelting point: 365 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 7.1610 (14) ÅCell parameters from 25 reflections
b = 11.497 (2) Åθ = 9–13°
c = 10.734 (2) ŵ = 0.10 mm1
β = 105.45 (3)°T = 293 K
V = 851.8 (3) Å3Block, colourless
Z = 20.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1246 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.047
graphiteθmax = 25.3°, θmin = 2.7°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = −13→13
Tmin = 0.970, Tmax = 0.990l = −12→12
3261 measured reflections3 standard reflections every 200 reflections
1549 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.1P)2 + 0.026P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1549 reflectionsΔρmax = 0.24 e Å3
110 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.30 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.03696 (18)0.64646 (11)0.57178 (12)0.0421 (4)
O10.25472 (18)1.00854 (10)0.36603 (13)0.0584 (4)
C10.2858 (3)1.0712 (2)0.2607 (2)0.0781 (7)
H1A0.23891.14920.26230.117*
H1B0.21771.03410.18150.117*
H1C0.42191.07290.26650.117*
O20.06007 (17)0.80910 (9)0.43882 (11)0.0532 (4)
C50.1950 (2)0.62630 (14)0.67339 (15)0.0479 (5)
H5A0.24370.68750.72920.057*
C20.3185 (3)0.89321 (17)0.3692 (2)0.0658 (6)
H2B0.45810.89170.38360.079*
H2C0.26030.85600.28690.079*
C30.2645 (3)0.82888 (15)0.4743 (2)0.0639 (6)
H3A0.33250.75510.48900.077*
H3B0.30140.87360.55370.077*
O30.32189 (18)0.33513 (10)0.62397 (14)0.0672 (5)
C4−0.0118 (2)0.77036 (13)0.54011 (17)0.0494 (5)
H4A−0.15140.77970.51650.059*
H4B0.04190.81770.61600.059*
C60.2837 (2)0.52236 (14)0.69674 (16)0.0489 (5)
H6A0.38600.51320.77040.059*
C70.2259 (2)0.42641 (13)0.61247 (15)0.0449 (4)
C80.0437 (2)0.44520 (12)0.50952 (13)0.0380 (4)
U11U22U33U12U13U23
N10.0493 (7)0.0351 (7)0.0376 (7)−0.0011 (5)0.0041 (5)−0.0016 (5)
O10.0678 (8)0.0436 (7)0.0690 (9)0.0043 (5)0.0273 (7)0.0064 (5)
C10.0727 (13)0.0781 (15)0.0928 (16)0.0075 (11)0.0385 (12)0.0289 (12)
O20.0602 (8)0.0402 (6)0.0513 (7)−0.0052 (5)0.0012 (6)0.0059 (5)
C50.0557 (9)0.0440 (9)0.0374 (9)−0.0068 (7)0.0009 (7)−0.0030 (6)
C20.0697 (11)0.0493 (11)0.0836 (14)0.0087 (9)0.0291 (10)0.0052 (9)
C30.0577 (11)0.0523 (11)0.0756 (13)0.0029 (8)0.0071 (9)0.0127 (9)
O30.0602 (8)0.0429 (7)0.0812 (10)0.0086 (5)−0.0114 (7)0.0018 (6)
C40.0565 (9)0.0341 (8)0.0532 (10)0.0014 (7)0.0066 (7)−0.0044 (7)
C60.0490 (9)0.0464 (9)0.0413 (9)−0.0051 (7)−0.0054 (7)0.0051 (7)
C70.0459 (9)0.0396 (8)0.0446 (9)0.0003 (7)0.0040 (7)0.0083 (7)
C80.0442 (8)0.0341 (8)0.0346 (8)−0.0035 (6)0.0086 (6)0.0034 (6)
N1—C51.366 (2)C2—H2B0.9700
N1—C8i1.3919 (19)C2—H2C0.9700
N1—C41.4843 (19)C3—H3A0.9700
O1—C21.400 (2)C3—H3B0.9700
O1—C11.407 (2)O3—C71.2426 (18)
C1—H1A0.9600C4—H4A0.9700
C1—H1B0.9600C4—H4B0.9700
C1—H1C0.9600C6—C71.417 (2)
O2—C41.394 (2)C6—H6A0.9300
O2—C31.429 (2)C7—C81.484 (2)
C5—C61.345 (2)C8—N1i1.3919 (19)
C5—H5A0.9300C8—C8i1.398 (3)
C2—C31.484 (3)
C5—N1—C8i119.30 (13)O2—C3—H3A109.8
C5—N1—C4116.10 (13)C2—C3—H3A109.8
C8i—N1—C4123.37 (13)O2—C3—H3B109.8
C2—O1—C1112.60 (16)C2—C3—H3B109.8
O1—C1—H1A109.5H3A—C3—H3B108.2
O1—C1—H1B109.5O2—C4—N1111.85 (13)
H1A—C1—H1B109.5O2—C4—H4A109.2
O1—C1—H1C109.5N1—C4—H4A109.2
H1A—C1—H1C109.5O2—C4—H4B109.2
H1B—C1—H1C109.5N1—C4—H4B109.2
C4—O2—C3114.06 (14)H4A—C4—H4B107.9
C6—C5—N1123.30 (15)C5—C6—C7121.98 (14)
C6—C5—H5A118.3C5—C6—H6A119.0
N1—C5—H5A118.3C7—C6—H6A119.0
O1—C2—C3109.96 (17)O3—C7—C6122.30 (14)
O1—C2—H2B109.7O3—C7—C8123.39 (14)
C3—C2—H2B109.7C6—C7—C8114.30 (13)
O1—C2—H2C109.7N1i—C8—C8i119.73 (16)
C3—C2—H2C109.7N1i—C8—C7119.50 (13)
H2B—C2—H2C108.2C8i—C8—C7120.73 (16)
O2—C3—C2109.45 (16)
C8i—N1—C5—C62.9 (3)N1—C5—C6—C73.7 (3)
C4—N1—C5—C6−164.78 (16)C5—C6—C7—O3170.47 (16)
C1—O1—C2—C3−174.45 (17)C5—C6—C7—C8−8.8 (2)
C4—O2—C3—C2−167.81 (14)O3—C7—C8—N1i6.6 (2)
O1—C2—C3—O272.0 (2)C6—C7—C8—N1i−174.16 (14)
C3—O2—C4—N1−74.84 (17)O3—C7—C8—C8i−171.19 (18)
C5—N1—C4—O297.84 (16)C6—C7—C8—C8i8.1 (2)
C8i—N1—C4—O2−69.31 (19)
D—H···AD—HH···AD···AD—H···A
C5—H5A···O3ii0.932.453.264 (2)147
C6—H6A···O1iii0.932.583.397 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯O3i0.932.453.264 (2)147
C6—H6A⋯O1ii0.932.583.397 (2)147

Symmetry codes: (i) ; (ii) .

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