Literature DB >> 22346919

2'-Hy-droxy-methyl-1'-(4-methyl-phen-yl)-2'-nitro-1',2',5',6',7',7a'-hexa-hydro-spiro-[indoline-3,3'-pyrrolizin]-2-one.

S Sathya, Sundari Bhaskaran, G Usha, N Sivakumar, M Bakthadoss.   

Abstract

In the title compound, C(22)H(23)N(3)O(4), the tolyl ring is almost perpendicular [83.86 (7)°] to the best plane through the eight atoms of the pyrrolizidine ring system. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯O hydrogen bond. The crystal packing features inversion dimers with R(2) (2)(8) motifs linked by pairs of N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346919      PMCID: PMC3274974          DOI: 10.1107/S1600536811055449

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For indole derivatives, see: Ali et al. (1989 ▶); Nigović et al. (2000 ▶); Okabe & Adachi (1998 ▶); Oxford (1995 ▶); Schollmeyer et al. (1995 ▶); Taylor et al. (1999 ▶). For a related structure, see: Usha et al. (2005 ▶). For ring conformations, see Nardelli (1983 ▶).

Experimental

Crystal data

C22H23N3O4 M = 393.43 Triclinic, a = 8.9172 (4) Å b = 9.9953 (4) Å c = 11.5931 (6) Å α = 81.257 (3)° β = 76.638 (3)° γ = 83.805 (2)° V = 990.79 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.18 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 18094 measured reflections 4912 independent reflections 3737 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.175 S = 1.25 4912 reflections 264 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811055449/bt5744sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055449/bt5744Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H23N3O4Z = 2
Mr = 393.43F(000) = 416
Triclinic, P1Dx = 1.319 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9172 (4) ÅCell parameters from 4951 reflections
b = 9.9953 (4) Åθ = 1.8–28.3°
c = 11.5931 (6) ŵ = 0.09 mm1
α = 81.257 (3)°T = 293 K
β = 76.638 (3)°Block, colorless
γ = 83.805 (2)°0.20 × 0.18 × 0.18 mm
V = 990.79 (8) Å3
Bruker Kappa APEXII CCD diffractometer3737 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 28.4°, θmin = 1.8°
ω and φ scanh = −11→11
18094 measured reflectionsk = −13→13
4912 independent reflectionsl = −15→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.25w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
4912 reflections(Δ/σ)max = 0.007
264 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.21898 (19)0.62617 (16)0.42758 (14)0.0478 (4)
H10.19480.70870.45790.057*
C20.1894 (2)0.50533 (18)0.50230 (16)0.0597 (5)
H20.14680.50680.58330.072*
C30.2229 (2)0.38237 (18)0.45695 (18)0.0665 (5)
H30.20100.30230.50800.080*
C40.2878 (2)0.37652 (16)0.33808 (17)0.0606 (5)
H40.31030.29400.30760.073*
C50.31830 (18)0.49813 (14)0.26526 (14)0.0431 (3)
C60.28473 (16)0.62292 (13)0.30774 (13)0.0371 (3)
C70.40581 (16)0.64665 (13)0.10119 (13)0.0378 (3)
C80.33024 (15)0.73416 (12)0.20230 (12)0.0329 (3)
C90.19143 (14)0.83335 (12)0.17272 (12)0.0323 (3)
C100.20643 (18)0.88938 (15)0.03935 (13)0.0426 (3)
H10A0.21250.8142−0.00590.051*
H10B0.11430.94720.02990.051*
C110.56071 (19)0.78765 (17)0.27409 (19)0.0574 (5)
H11A0.65830.77130.21860.069*
H11B0.53770.70540.32900.069*
C120.5667 (2)0.9037 (2)0.3407 (2)0.0771 (7)
H12A0.64050.96620.29350.093*
H12B0.59660.87090.41590.093*
C130.40563 (19)0.97253 (16)0.36233 (15)0.0511 (4)
H13A0.40661.06720.37180.061*
H13B0.33920.92720.43250.061*
C140.35435 (15)0.95803 (13)0.24826 (13)0.0360 (3)
H140.38821.03410.18700.043*
C150.18254 (15)0.94197 (12)0.25671 (12)0.0328 (3)
H150.14070.89950.33820.039*
C160.08246 (15)1.07192 (13)0.23587 (12)0.0365 (3)
C17−0.06238 (17)1.08928 (15)0.31073 (15)0.0471 (4)
H17−0.09471.02210.37390.056*
C18−0.15936 (19)1.20451 (16)0.29307 (16)0.0521 (4)
H18−0.25601.21280.34420.063*
C19−0.11602 (18)1.30755 (15)0.20124 (15)0.0473 (4)
C200.0293 (2)1.29239 (15)0.12843 (15)0.0497 (4)
H200.06241.36140.06720.060*
C210.12749 (18)1.17662 (14)0.14433 (14)0.0443 (3)
H210.22431.16900.09330.053*
C22−0.2232 (2)1.42970 (17)0.17871 (19)0.0633 (5)
H22A−0.31571.42620.24060.095*
H22B−0.24901.43100.10260.095*
H22C−0.17351.51040.17850.095*
N10.38738 (15)0.51498 (12)0.14359 (12)0.0456 (3)
H1A0.41480.44950.10100.055*
N20.04800 (14)0.75474 (12)0.20397 (12)0.0422 (3)
N30.43621 (12)0.83081 (11)0.20981 (11)0.0381 (3)
O1−0.06118 (13)0.78766 (13)0.28004 (13)0.0675 (4)
O20.05119 (15)0.65971 (13)0.14818 (13)0.0665 (4)
O30.33650 (13)0.96383 (11)−0.00794 (10)0.0511 (3)
H3A0.41520.9135−0.00650.077*
O40.47420 (14)0.69055 (10)0.00021 (10)0.0502 (3)
U11U22U33U12U13U23
C10.0539 (9)0.0497 (8)0.0399 (9)0.0035 (7)−0.0110 (7)−0.0100 (6)
C20.0661 (11)0.0658 (11)0.0403 (9)0.0023 (9)−0.0074 (8)0.0034 (8)
C30.0788 (13)0.0494 (9)0.0619 (12)0.0034 (8)−0.0128 (10)0.0120 (8)
C40.0760 (13)0.0385 (8)0.0622 (12)0.0062 (8)−0.0124 (10)−0.0019 (7)
C50.0454 (8)0.0383 (7)0.0451 (9)0.0042 (6)−0.0102 (7)−0.0086 (6)
C60.0384 (7)0.0374 (6)0.0366 (7)0.0021 (5)−0.0115 (6)−0.0066 (5)
C70.0365 (7)0.0376 (7)0.0417 (8)−0.0003 (5)−0.0070 (6)−0.0164 (6)
C80.0322 (7)0.0335 (6)0.0348 (7)−0.0006 (5)−0.0067 (5)−0.0127 (5)
C90.0279 (6)0.0335 (6)0.0367 (7)−0.0031 (5)−0.0075 (5)−0.0077 (5)
C100.0473 (8)0.0464 (8)0.0363 (8)−0.0036 (6)−0.0115 (6)−0.0086 (6)
C110.0405 (8)0.0548 (9)0.0891 (13)0.0092 (7)−0.0314 (9)−0.0296 (9)
C120.0755 (13)0.0767 (12)0.1030 (17)0.0189 (10)−0.0583 (13)−0.0437 (12)
C130.0588 (10)0.0488 (8)0.0568 (10)0.0035 (7)−0.0270 (8)−0.0244 (7)
C140.0352 (7)0.0335 (6)0.0431 (8)0.0002 (5)−0.0114 (6)−0.0143 (5)
C150.0317 (7)0.0334 (6)0.0328 (7)0.0009 (5)−0.0051 (5)−0.0083 (5)
C160.0352 (7)0.0366 (6)0.0387 (8)0.0021 (5)−0.0083 (6)−0.0114 (5)
C170.0423 (8)0.0444 (8)0.0492 (9)0.0032 (6)−0.0003 (7)−0.0094 (6)
C180.0387 (8)0.0524 (9)0.0638 (11)0.0091 (7)−0.0055 (7)−0.0207 (8)
C190.0476 (9)0.0398 (7)0.0627 (10)0.0066 (6)−0.0251 (8)−0.0186 (7)
C200.0558 (10)0.0395 (7)0.0556 (10)−0.0003 (7)−0.0198 (8)−0.0029 (7)
C210.0405 (8)0.0410 (7)0.0489 (9)0.0015 (6)−0.0066 (7)−0.0062 (6)
C220.0604 (11)0.0472 (9)0.0901 (14)0.0132 (8)−0.0346 (10)−0.0176 (9)
N10.0561 (8)0.0340 (6)0.0454 (7)0.0031 (5)−0.0045 (6)−0.0154 (5)
N20.0355 (6)0.0417 (6)0.0514 (8)−0.0069 (5)−0.0139 (6)−0.0031 (5)
N30.0280 (6)0.0383 (6)0.0525 (7)0.0012 (4)−0.0111 (5)−0.0192 (5)
O10.0370 (6)0.0687 (8)0.0894 (10)−0.0126 (6)0.0076 (6)−0.0141 (7)
O20.0668 (8)0.0596 (7)0.0847 (10)−0.0225 (6)−0.0224 (7)−0.0237 (7)
O30.0543 (7)0.0523 (6)0.0417 (6)−0.0083 (5)−0.0003 (5)−0.0035 (5)
O40.0595 (7)0.0436 (6)0.0429 (6)−0.0035 (5)0.0053 (5)−0.0169 (5)
C1—C61.381 (2)C12—H12A0.9700
C1—C21.387 (2)C12—H12B0.9700
C1—H10.9300C13—C141.527 (2)
C2—C31.386 (3)C13—H13A0.9700
C2—H20.9300C13—H13B0.9700
C3—C41.373 (3)C14—N31.4732 (16)
C3—H30.9300C14—C151.5367 (18)
C4—C51.385 (2)C14—H140.9800
C4—H40.9300C15—C161.5153 (17)
C5—C61.3878 (19)C15—H150.9800
C5—N11.3950 (19)C16—C171.390 (2)
C6—C81.5331 (19)C16—C211.392 (2)
C7—O41.2274 (18)C17—C181.383 (2)
C7—N11.3465 (18)C17—H170.9300
C7—C81.5532 (18)C18—C191.381 (2)
C8—N31.4472 (16)C18—H180.9300
C8—C91.5686 (18)C19—C201.381 (2)
C9—N21.5167 (16)C19—C221.496 (2)
C9—C101.543 (2)C20—C211.389 (2)
C9—C151.5493 (17)C20—H200.9300
C10—O31.4028 (18)C21—H210.9300
C10—H10A0.9700C22—H22A0.9600
C10—H10B0.9700C22—H22B0.9600
C11—N31.4680 (19)C22—H22C0.9600
C11—C121.499 (2)N1—H1A0.8600
C11—H11A0.9700N2—O11.2067 (18)
C11—H11B0.9700N2—O21.2223 (17)
C12—C131.507 (2)O3—H3A0.8200
C6—C1—C2119.44 (15)C12—C13—H13A111.4
C6—C1—H1120.3C14—C13—H13A111.4
C2—C1—H1120.3C12—C13—H13B111.4
C1—C2—C3120.40 (17)C14—C13—H13B111.4
C1—C2—H2119.8H13A—C13—H13B109.2
C3—C2—H2119.8N3—C14—C13104.96 (11)
C4—C3—C2121.25 (16)N3—C14—C15105.21 (10)
C4—C3—H3119.4C13—C14—C15118.35 (12)
C2—C3—H3119.4N3—C14—H14109.3
C3—C4—C5117.47 (16)C13—C14—H14109.3
C3—C4—H4121.3C15—C14—H14109.3
C5—C4—H4121.3C16—C15—C14116.15 (11)
C4—C5—C6122.65 (15)C16—C15—C9117.55 (11)
C4—C5—N1126.82 (14)C14—C15—C9101.87 (10)
C6—C5—N1110.52 (12)C16—C15—H15106.8
C1—C6—C5118.79 (14)C14—C15—H15106.8
C1—C6—C8133.01 (12)C9—C15—H15106.8
C5—C6—C8108.19 (12)C17—C16—C21117.36 (13)
O4—C7—N1125.80 (13)C17—C16—C15119.24 (13)
O4—C7—C8125.37 (12)C21—C16—C15123.40 (12)
N1—C7—C8108.81 (12)C18—C17—C16121.25 (15)
N3—C8—C6119.23 (11)C18—C17—H17119.4
N3—C8—C7109.64 (10)C16—C17—H17119.4
C6—C8—C7100.66 (10)C17—C18—C19121.52 (15)
N3—C8—C9100.32 (9)C17—C18—H18119.2
C6—C8—C9114.29 (11)C19—C18—H18119.2
C7—C8—C9113.20 (10)C18—C19—C20117.47 (13)
N2—C9—C10104.26 (11)C18—C19—C22121.66 (15)
N2—C9—C15112.33 (11)C20—C19—C22120.85 (16)
C10—C9—C15115.03 (11)C19—C20—C21121.66 (15)
N2—C9—C8108.15 (10)C19—C20—H20119.2
C10—C9—C8115.16 (11)C21—C20—H20119.2
C15—C9—C8101.99 (10)C20—C21—C16120.71 (14)
O3—C10—C9113.06 (12)C20—C21—H21119.6
O3—C10—H10A109.0C16—C21—H21119.6
C9—C10—H10A109.0C19—C22—H22A109.5
O3—C10—H10B109.0C19—C22—H22B109.5
C9—C10—H10B109.0H22A—C22—H22B109.5
H10A—C10—H10B107.8C19—C22—H22C109.5
N3—C11—C12104.69 (13)H22A—C22—H22C109.5
N3—C11—H11A110.8H22B—C22—H22C109.5
C12—C11—H11A110.8C7—N1—C5111.50 (12)
N3—C11—H11B110.8C7—N1—H1A124.3
C12—C11—H11B110.8C5—N1—H1A124.2
H11A—C11—H11B108.9O1—N2—O2123.69 (13)
C11—C12—C13105.71 (14)O1—N2—C9119.96 (12)
C11—C12—H12A110.6O2—N2—C9116.35 (12)
C13—C12—H12A110.6C8—N3—C11119.86 (12)
C11—C12—H12B110.6C8—N3—C14111.92 (10)
C13—C12—H12B110.6C11—N3—C14109.93 (11)
H12A—C12—H12B108.7C10—O3—H3A109.5
C12—C13—C14102.09 (13)
C6—C1—C2—C3−1.1 (3)N2—C9—C15—C16−76.79 (15)
C1—C2—C3—C40.9 (3)C10—C9—C15—C1642.26 (16)
C2—C3—C4—C5−0.1 (3)C8—C9—C15—C16167.64 (11)
C3—C4—C5—C6−0.6 (3)N2—C9—C15—C14155.06 (11)
C3—C4—C5—N1178.06 (17)C10—C9—C15—C14−85.88 (13)
C2—C1—C6—C50.5 (2)C8—C9—C15—C1439.49 (13)
C2—C1—C6—C8179.21 (15)C14—C15—C16—C17−136.58 (14)
C4—C5—C6—C10.4 (2)C9—C15—C16—C17102.44 (15)
N1—C5—C6—C1−178.47 (13)C14—C15—C16—C2143.66 (18)
C4—C5—C6—C8−178.65 (15)C9—C15—C16—C21−77.31 (17)
N1—C5—C6—C82.51 (17)C21—C16—C17—C181.6 (2)
C1—C6—C8—N356.6 (2)C15—C16—C17—C18−178.20 (13)
C5—C6—C8—N3−124.58 (13)C16—C17—C18—C19−0.6 (2)
C1—C6—C8—C7176.41 (15)C17—C18—C19—C20−1.0 (2)
C5—C6—C8—C7−4.77 (14)C17—C18—C19—C22177.39 (15)
C1—C6—C8—C9−61.95 (19)C18—C19—C20—C211.7 (2)
C5—C6—C8—C9116.88 (12)C22—C19—C20—C21−176.77 (14)
O4—C7—C8—N3−46.30 (18)C19—C20—C21—C16−0.7 (2)
N1—C7—C8—N3132.12 (12)C17—C16—C21—C20−0.9 (2)
O4—C7—C8—C6−172.79 (14)C15—C16—C21—C20178.82 (13)
N1—C7—C8—C65.63 (14)O4—C7—N1—C5173.80 (14)
O4—C7—C8—C964.80 (18)C8—C7—N1—C5−4.61 (17)
N1—C7—C8—C9−116.79 (13)C4—C5—N1—C7−177.40 (16)
N3—C8—C9—N2−160.20 (10)C6—C5—N1—C71.38 (19)
C6—C8—C9—N2−31.39 (14)C10—C9—N2—O1−119.17 (15)
C7—C8—C9—N283.07 (13)C15—C9—N2—O16.03 (18)
N3—C8—C9—C1083.67 (12)C8—C9—N2—O1117.81 (14)
C6—C8—C9—C10−147.53 (11)C10—C9—N2—O260.59 (15)
C7—C8—C9—C10−33.06 (15)C15—C9—N2—O2−174.22 (12)
N3—C8—C9—C15−41.62 (12)C8—C9—N2—O2−62.43 (16)
C6—C8—C9—C1587.19 (12)C6—C8—N3—C1134.10 (18)
C7—C8—C9—C15−158.34 (10)C7—C8—N3—C11−81.02 (16)
N2—C9—C10—O3−178.62 (11)C9—C8—N3—C11159.63 (13)
C15—C9—C10—O357.92 (16)C6—C8—N3—C14−96.79 (14)
C8—C9—C10—O3−60.29 (15)C7—C8—N3—C14148.08 (11)
N3—C11—C12—C1327.5 (2)C9—C8—N3—C1428.74 (14)
C11—C12—C13—C14−35.8 (2)C12—C11—N3—C8−139.59 (16)
C12—C13—C14—N330.41 (17)C12—C11—N3—C14−7.8 (2)
C12—C13—C14—C15147.33 (15)C13—C14—N3—C8121.37 (13)
N3—C14—C15—C16−151.72 (11)C15—C14—N3—C8−4.22 (15)
C13—C14—C15—C1691.49 (15)C13—C14—N3—C11−14.42 (16)
N3—C14—C15—C9−22.68 (13)C15—C14—N3—C11−140.01 (13)
C13—C14—C15—C9−139.47 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.862.002.8401 (15)167.
O3—H3A···O40.822.232.8686 (15)135.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.862.002.8401 (15)167
O3—H3A⋯O40.822.232.8686 (15)135

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Correlation of structural and physico-chemical parameters with the bioactivity of alkylated derivatives of indole-3-acetic acid, a phytohormone (auxin).

Authors:  B Nigović; S Antolić; B Kojić-Prodić; R Kiralj; V Magnus; B Salopek-Sondi
Journal:  Acta Crystallogr B       Date:  2000-02

3.  Pyrido [1,2a] indole derivatives identified as novel non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1.

Authors:  D L Taylor; P S Ahmed; P Chambers; A S Tyms; J Bedard; J Duchaine; G Falardeau; J F Lavallée; W Brown; R F Rando; T Bowlin
Journal:  Antivir Chem Chemother       Date:  1999-03

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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