Literature DB >> 22346911

2-Eth-oxy-ethyl (Z)-2-cyano-3-[(N-phenyl-carbamo-yl)amino]-prop-2-enoate.

Shihua Zhong1, Dongmei Wei, Jianbing Liu, Bingyu Liu.   

Abstract

The crystal structure of the title compound, C(15)H(17)N(3)O(4), is stabilized by inter-molecular N-H⋯N hydrogen bonds. An intra-molecular N-H⋯O hydrogen bond also occurs.

Entities:  

Year:  2012        PMID: 22346911      PMCID: PMC3274966          DOI: 10.1107/S1600536811055000

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesized as a possible novel herbicide. For details of the synthesis, see: Wang et al. (2004 ▶); Senda et al. (1972 ▶). For reviews of cyano­acrylate derivatives as bioactive agents, see: Zhang et al. (2008 ▶); Liu et al. (1998 ▶).

Experimental

Crystal data

C15H17N3O4 M = 303.32 Monoclinic, a = 25.102 (7) Å b = 12.013 (3) Å c = 10.436 (3) Å β = 96.248 (4)° V = 3128.4 (16) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 153 K 0.48 × 0.44 × 0.09 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.956, T max = 0.992 16240 measured reflections 4149 independent reflections 2994 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.116 S = 1.00 4149 reflections 208 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811055000/hg5148sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055000/hg5148Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055000/hg5148Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17N3O4F(000) = 1280
Mr = 303.32Dx = 1.288 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4353 reflections
a = 25.102 (7) Åθ = 2.7–29.1°
b = 12.013 (3) ŵ = 0.10 mm1
c = 10.436 (3) ÅT = 153 K
β = 96.248 (4)°Platelet, colorless
V = 3128.4 (16) Å30.48 × 0.44 × 0.09 mm
Z = 8
Rigaku AFC10/Saturn724+ diffractometer4149 independent reflections
Radiation source: Rotating Anode2994 reflections with I > 2σ(I)
graphiteRint = 0.038
Detector resolution: 28.5714 pixels mm-1θmax = 29.1°, θmin = 2.7°
phi and ω scansh = −34→32
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −16→16
Tmin = 0.956, Tmax = 0.992l = −13→14
16240 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0616P)2 + 0.136P] where P = (Fo2 + 2Fc2)/3
4149 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.15659 (4)0.22114 (7)0.47309 (9)0.0364 (2)
O20.32432 (3)0.36646 (7)0.09862 (8)0.0255 (2)
O30.27763 (4)0.46231 (7)0.23556 (8)0.0306 (2)
O40.42663 (4)0.39232 (8)−0.00208 (9)0.0364 (2)
N10.16467 (4)0.40528 (8)0.53128 (10)0.0250 (2)
N20.21226 (4)0.33631 (8)0.37397 (9)0.0240 (2)
N30.28465 (4)0.09868 (8)0.07213 (10)0.0289 (3)
C10.11615 (5)0.52205 (11)0.66349 (12)0.0307 (3)
H10.12980.58440.62160.037*
C20.08347 (6)0.53787 (13)0.76109 (13)0.0375 (3)
H20.07470.61120.78580.045*
C30.06367 (6)0.44733 (14)0.82240 (13)0.0396 (3)
H30.04160.45830.88960.047*
C40.07616 (5)0.34066 (13)0.78556 (13)0.0362 (3)
H40.06250.27850.82780.043*
C50.10845 (5)0.32346 (11)0.68761 (12)0.0282 (3)
H50.11650.25000.66220.034*
C60.12894 (5)0.41423 (10)0.62707 (11)0.0232 (3)
C70.17519 (5)0.31405 (9)0.46344 (12)0.0242 (3)
C80.22843 (5)0.25503 (9)0.29863 (11)0.0227 (3)
H80.21420.18270.30860.027*
C90.26364 (5)0.26801 (9)0.20886 (11)0.0221 (2)
C100.28862 (5)0.37541 (10)0.18432 (11)0.0229 (3)
C110.34591 (5)0.47118 (10)0.05780 (13)0.0291 (3)
H11A0.36840.50620.13060.035*
H11B0.31640.52290.02840.035*
C120.37881 (5)0.44736 (11)−0.05006 (12)0.0306 (3)
H12A0.35810.4000−0.11530.037*
H12B0.38760.5179−0.09210.037*
C130.45942 (7)0.36769 (16)−0.10075 (16)0.0567 (5)
H13A0.47010.4375−0.14140.068*
H13B0.43930.3214−0.16800.068*
C140.50822 (8)0.30642 (17)−0.0432 (2)0.0745 (6)
H14A0.52550.34860.03030.112*
H14B0.53330.2978−0.10820.112*
H14C0.49780.2328−0.01400.112*
C150.27583 (5)0.17378 (9)0.13389 (11)0.0225 (2)
H2N0.2248 (6)0.4059 (13)0.3597 (14)0.038 (4)*
H1N0.1787 (6)0.4663 (13)0.5061 (13)0.035 (4)*
U11U22U33U12U13U23
O10.0471 (6)0.0169 (4)0.0493 (6)−0.0065 (4)0.0241 (5)−0.0041 (4)
O20.0295 (5)0.0150 (4)0.0342 (5)0.0004 (3)0.0134 (4)0.0003 (3)
O30.0400 (5)0.0168 (4)0.0375 (5)−0.0024 (4)0.0153 (4)−0.0060 (4)
O40.0314 (5)0.0425 (6)0.0375 (5)0.0078 (4)0.0141 (4)0.0064 (4)
N10.0334 (6)0.0155 (5)0.0278 (5)−0.0017 (4)0.0116 (5)0.0003 (4)
N20.0296 (6)0.0155 (5)0.0285 (5)−0.0011 (4)0.0100 (4)−0.0003 (4)
N30.0372 (6)0.0178 (5)0.0324 (6)0.0009 (4)0.0075 (5)−0.0013 (4)
C10.0371 (7)0.0251 (6)0.0304 (7)0.0022 (5)0.0059 (6)−0.0027 (5)
C20.0379 (8)0.0414 (8)0.0337 (7)0.0084 (6)0.0059 (6)−0.0101 (6)
C30.0309 (7)0.0592 (10)0.0302 (7)0.0019 (7)0.0106 (6)−0.0055 (7)
C40.0303 (7)0.0464 (9)0.0330 (7)−0.0043 (6)0.0084 (6)0.0058 (6)
C50.0283 (7)0.0285 (6)0.0283 (6)−0.0019 (5)0.0057 (5)0.0028 (5)
C60.0235 (6)0.0252 (6)0.0212 (6)0.0009 (4)0.0031 (5)−0.0007 (5)
C70.0271 (6)0.0182 (6)0.0282 (6)0.0003 (4)0.0070 (5)0.0011 (5)
C80.0265 (6)0.0161 (5)0.0256 (6)0.0003 (4)0.0030 (5)−0.0002 (4)
C90.0259 (6)0.0146 (5)0.0261 (6)0.0014 (4)0.0045 (5)−0.0008 (4)
C100.0254 (6)0.0181 (6)0.0258 (6)0.0011 (4)0.0049 (5)−0.0009 (4)
C110.0336 (7)0.0165 (6)0.0391 (7)−0.0024 (5)0.0123 (6)0.0018 (5)
C120.0333 (7)0.0263 (6)0.0337 (7)0.0011 (5)0.0101 (6)0.0050 (5)
C130.0563 (10)0.0660 (12)0.0536 (10)0.0232 (9)0.0333 (8)0.0157 (8)
C140.0570 (12)0.0897 (16)0.0838 (14)0.0342 (11)0.0399 (11)0.0275 (12)
C150.0255 (6)0.0172 (5)0.0251 (6)0.0001 (4)0.0046 (5)0.0030 (4)
O1—C71.2183 (14)C4—C51.3875 (18)
O2—C101.3376 (14)C4—H40.9500
O2—C111.4520 (14)C5—C61.3869 (17)
O3—C101.2181 (14)C5—H50.9500
O4—C121.4135 (15)C8—C91.3650 (16)
O4—C131.4177 (17)C8—H80.9500
N1—C71.3465 (15)C9—C151.4281 (16)
N1—C61.4179 (15)C9—C101.4691 (16)
N1—H1N0.867 (15)C11—C121.4943 (18)
N2—C81.3439 (15)C11—H11A0.9900
N2—C71.4136 (15)C11—H11B0.9900
N2—H2N0.910 (15)C12—H12A0.9900
N3—C151.1443 (15)C12—H12B0.9900
C1—C21.3887 (18)C13—C141.498 (2)
C1—C61.3970 (17)C13—H13A0.9900
C1—H10.9500C13—H13B0.9900
C2—C31.382 (2)C14—H14A0.9800
C2—H20.9500C14—H14B0.9800
C3—C41.384 (2)C14—H14C0.9800
C3—H30.9500
C10—O2—C11115.17 (9)C8—C9—C15118.61 (11)
C12—O4—C13112.22 (11)C8—C9—C10122.71 (10)
C7—N1—C6127.43 (10)C15—C9—C10118.66 (10)
C7—N1—H1N114.8 (10)O3—C10—O2124.24 (11)
C6—N1—H1N117.3 (10)O3—C10—C9123.70 (11)
C8—N2—C7120.76 (10)O2—C10—C9112.06 (10)
C8—N2—H2N116.1 (9)O2—C11—C12108.04 (10)
C7—N2—H2N123.0 (9)O2—C11—H11A110.1
C2—C1—C6119.87 (13)C12—C11—H11A110.1
C2—C1—H1120.1O2—C11—H11B110.1
C6—C1—H1120.1C12—C11—H11B110.1
C3—C2—C1120.20 (13)H11A—C11—H11B108.4
C3—C2—H2119.9O4—C12—C11109.89 (10)
C1—C2—H2119.9O4—C12—H12A109.7
C2—C3—C4119.78 (13)C11—C12—H12A109.7
C2—C3—H3120.1O4—C12—H12B109.7
C4—C3—H3120.1C11—C12—H12B109.7
C3—C4—C5120.72 (13)H12A—C12—H12B108.2
C3—C4—H4119.6O4—C13—C14108.98 (14)
C5—C4—H4119.6O4—C13—H13A109.9
C6—C5—C4119.60 (13)C14—C13—H13A109.9
C6—C5—H5120.2O4—C13—H13B109.9
C4—C5—H5120.2C14—C13—H13B109.9
C5—C6—C1119.82 (12)H13A—C13—H13B108.3
C5—C6—N1123.78 (11)C13—C14—H14A109.5
C1—C6—N1116.35 (11)C13—C14—H14B109.5
O1—C7—N1127.11 (12)H14A—C14—H14B109.5
O1—C7—N2120.92 (11)C13—C14—H14C109.5
N1—C7—N2111.98 (10)H14A—C14—H14C109.5
N2—C8—C9125.30 (11)H14B—C14—H14C109.5
N2—C8—H8117.3N3—C15—C9178.57 (13)
C9—C8—H8117.3
C6—C1—C2—C30.1 (2)C7—N2—C8—C9179.49 (11)
C1—C2—C3—C4−0.5 (2)N2—C8—C9—C15−178.46 (11)
C2—C3—C4—C50.1 (2)N2—C8—C9—C100.22 (19)
C3—C4—C5—C60.8 (2)C11—O2—C10—O3−6.56 (17)
C4—C5—C6—C1−1.16 (18)C11—O2—C10—C9172.90 (10)
C4—C5—C6—N1176.29 (11)C8—C9—C10—O3−4.72 (19)
C2—C1—C6—C50.71 (19)C15—C9—C10—O3173.95 (11)
C2—C1—C6—N1−176.93 (11)C8—C9—C10—O2175.81 (10)
C7—N1—C6—C515.9 (2)C15—C9—C10—O2−5.52 (16)
C7—N1—C6—C1−166.53 (12)C10—O2—C11—C12−172.26 (10)
C6—N1—C7—O1−1.3 (2)C13—O4—C12—C11180.00 (13)
C6—N1—C7—N2178.81 (11)O2—C11—C12—O4−71.42 (13)
C8—N2—C7—O1−0.93 (18)C12—O4—C13—C14−178.18 (14)
C8—N2—C7—N1178.97 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O30.910 (15)2.068 (15)2.7543 (14)131.2 (12)
N1—H1N···N3i0.867 (15)2.050 (15)2.9120 (15)172.6 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O30.910 (15)2.068 (15)2.7543 (14)131.2 (12)
N1—H1N⋯N3i0.867 (15)2.050 (15)2.9120 (15)172.6 (14)

Symmetry code: (i) .

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