Literature DB >> 22346902

1-(3,5-Dimeth-oxy-phen-yl)-2-(4-fluoro-phen-yl)-4,5-dimethyl-1H-imidazole.

S Rosepriya, A Thiruvalluvar, K Saravanan, J Jayabharathi, Ray J Butcher.   

Abstract

In the title compound, C(19)H(19)FN(2)O(2), the imidazole ring is essentially planar [maximum deviation = 0.0030 (8) Å] and makes dihedral angles of 66.45 (7) and 29.98 (7)° with the benzene rings attached to the ring N and C atoms, respectively. The dihedral angle between the two benzene rings is 64.79 (7)°. A C-H⋯π inter-action is found in the crystal structure. The two meth-oxy groups were found to be disordered over two sets of sites with occupancy factors of 0.803 (4) and 0.197 (4). The F atom is disordered over two sites with occupancy factors of 0.929 (4) and 0.071 (4).

Entities:  

Year:  2012        PMID: 22346902      PMCID: PMC3274949          DOI: 10.1107/S1600536811055012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of imidazole derivatives as drugs, see: Dooley et al. (1992 ▶); Jackson et al. (2000 ▶); Banfi et al. (2006 ▶). For a related structure and applications of n class="Chemical">imidazole derivatives, see: Rosepriya et al. (2011 ▶).

Experimental

Crystal data

C19H19FN2O2 M = 326.36 Monoclinic, a = 6.9654 (1) Å b = 17.8520 (3) Å c = 13.7121 (3) Å β = 97.833 (2)° V = 1689.14 (5) Å3 Z = 4 Cu Kα radiation μ = 0.75 mm−1 T = 295 K 0.47 × 0.38 × 0.16 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan CrysAlis PRO (Oxford Diffraction, 2010 ▶) T min = 0.558, T max = 1.000 7744 measured reflections 3533 independent reflections 2723 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.138 S = 1.06 3533 reflections 240 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055012/hg5156sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055012/hg5156Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811055012/hg5156Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811055012/hg5156Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19FN2O2F(000) = 688
Mr = 326.36Dx = 1.283 Mg m3
Monoclinic, P21/nMelting point: 420 K
Hall symbol: -P 2ynCu Kα radiation, λ = 1.54184 Å
a = 6.9654 (1) ÅCell parameters from 3957 reflections
b = 17.8520 (3) Åθ = 5.0–77.4°
c = 13.7121 (3) ŵ = 0.75 mm1
β = 97.833 (2)°T = 295 K
V = 1689.14 (5) Å3Plate, colourless
Z = 40.47 × 0.38 × 0.16 mm
Oxford Diffraction Xcalibur Ruby Gemini diffractometer3533 independent reflections
Radiation source: Enhance (Mo) X-ray Source2723 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 10.5081 pixels mm-1θmax = 77.6°, θmin = 5.0°
ω scansh = −4→8
Absorption correction: multi-scan CrysAlis PRO (Oxford Diffraction, 2010)k = −22→21
Tmin = 0.558, Tmax = 1.000l = −17→17
7744 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0917P)2 + 0.0185P] where P = (Fo2 + 2Fc2)/3
3533 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.A damping factor (DAMP 200 15 in the final refinement cycles) was applied to avoid large displacements of the less occupied methoxy and fluorine atoms with EADP F4A F4B, EADP O13A O13B, EADP O15A O15B, EADP C17A C17B, EADP C18A C18B.
xyzUiso*/UeqOcc. (<1)
F4A−0.29421 (17)0.18280 (10)0.14002 (10)0.0827 (4)0.929 (4)
O13A0.7091 (3)0.45839 (10)0.22912 (15)0.0748 (6)0.803 (4)
O15A0.2065 (3)0.45966 (11)0.43181 (19)0.0728 (6)0.803 (4)
N10.55071 (14)0.23172 (5)0.40039 (8)0.0452 (3)
N30.48548 (15)0.11225 (6)0.42587 (9)0.0513 (3)
C20.42077 (16)0.17418 (6)0.38065 (9)0.0446 (3)
C40.66338 (17)0.12988 (7)0.47766 (10)0.0513 (3)
C50.70736 (16)0.20299 (7)0.46281 (10)0.0493 (3)
C110.52171 (16)0.30968 (6)0.37642 (9)0.0459 (3)
C120.64059 (19)0.34342 (7)0.31551 (11)0.0533 (4)
C130.6101 (2)0.41860 (8)0.29299 (12)0.0600 (4)
C140.4653 (2)0.45903 (7)0.33020 (13)0.0643 (5)
C150.3491 (2)0.42387 (7)0.38983 (11)0.0564 (4)
C160.37798 (17)0.34825 (7)0.41430 (10)0.0502 (4)
C17A0.8558 (4)0.4227 (2)0.1871 (3)0.0874 (9)0.803 (4)
C18A0.1764 (5)0.53712 (15)0.4144 (3)0.0865 (12)0.803 (4)
C210.23453 (16)0.17930 (6)0.31576 (9)0.0446 (3)
C220.2032 (2)0.22706 (8)0.23517 (10)0.0562 (4)
C230.0262 (2)0.22827 (9)0.17545 (11)0.0642 (4)
C24−0.11786 (19)0.18160 (8)0.19783 (11)0.0571 (4)
C25−0.09381 (19)0.13336 (7)0.27609 (11)0.0551 (4)
C260.08443 (18)0.13216 (7)0.33465 (10)0.0500 (3)
C410.7816 (2)0.07173 (10)0.53699 (14)0.0737 (5)
C510.8802 (2)0.24892 (9)0.50026 (13)0.0651 (5)
C17B0.898 (2)0.4240 (10)0.2150 (14)0.0874 (9)0.197 (4)
C18B0.135 (2)0.5285 (8)0.3807 (13)0.0865 (12)0.197 (4)
O13B0.7483 (14)0.4621 (5)0.2658 (7)0.0748 (6)0.197 (4)
O15B0.1779 (16)0.4481 (5)0.4134 (10)0.0728 (6)0.197 (4)
F4B−0.253 (3)0.2120 (13)0.1380 (16)0.0827 (4)0.071 (4)
H160.301330.324520.455450.0602*
H17A0.949890.402790.238190.1309*0.803 (4)
H120.737400.316460.290690.0639*
H140.447180.509510.314890.0771*
H220.302290.258560.221190.0675*
H230.005480.260060.121310.0770*
H25−0.194190.102320.289520.0662*
H260.104440.099260.387650.0600*
H41A0.867310.048170.497090.1106*
H41B0.697190.034750.559040.1106*
H41C0.856250.094930.592930.1106*
H51A0.964500.220460.547670.0976*
H51B0.839380.293490.530810.0976*
H51C0.948120.262440.446460.0976*
H17B0.917180.458000.148570.1309*0.803 (4)
H17C0.801260.382580.145540.1309*0.803 (4)
H18A0.290260.564300.441320.1298*0.803 (4)
H18B0.068030.553630.445180.1298*0.803 (4)
H18C0.150320.546000.344770.1298*0.803 (4)
H17D0.996790.403370.263250.1309*0.197 (4)
H17E0.955280.459680.175170.1309*0.197 (4)
H17F0.838560.384520.174010.1309*0.197 (4)
H18D0.250690.558100.395390.1298*0.197 (4)
H18E0.035530.548600.415040.1298*0.197 (4)
H18F0.092700.529610.311140.1298*0.197 (4)
U11U22U33U12U13U23
F4A0.0562 (6)0.1013 (10)0.0835 (6)0.0048 (5)−0.0161 (5)−0.0034 (7)
O13A0.0855 (9)0.0547 (6)0.0943 (13)0.0053 (6)0.0491 (9)0.0201 (8)
O15A0.0821 (9)0.0435 (8)0.1025 (12)0.0134 (6)0.0473 (8)0.0021 (7)
N10.0446 (4)0.0365 (4)0.0546 (5)−0.0007 (3)0.0076 (4)−0.0003 (4)
N30.0490 (5)0.0410 (5)0.0638 (6)0.0016 (4)0.0079 (4)0.0075 (4)
C20.0466 (5)0.0357 (5)0.0523 (6)−0.0006 (4)0.0092 (4)0.0016 (4)
C40.0472 (5)0.0477 (6)0.0594 (7)0.0056 (5)0.0090 (5)0.0059 (5)
C50.0443 (5)0.0474 (6)0.0564 (6)0.0030 (4)0.0075 (4)−0.0035 (5)
C110.0481 (5)0.0349 (5)0.0552 (6)−0.0017 (4)0.0086 (4)−0.0018 (4)
C120.0532 (6)0.0419 (6)0.0685 (8)0.0010 (5)0.0218 (5)−0.0016 (5)
C130.0636 (7)0.0450 (6)0.0767 (9)−0.0020 (5)0.0287 (6)0.0070 (6)
C140.0749 (8)0.0362 (6)0.0872 (10)0.0049 (5)0.0309 (7)0.0091 (6)
C150.0604 (7)0.0421 (6)0.0707 (8)0.0061 (5)0.0237 (6)−0.0004 (5)
C160.0528 (6)0.0414 (6)0.0589 (7)−0.0013 (5)0.0168 (5)0.0020 (5)
C17A0.0810 (14)0.0824 (12)0.110 (2)0.0107 (12)0.0532 (13)0.0286 (14)
C18A0.0976 (16)0.0484 (10)0.123 (3)0.0222 (10)0.0493 (15)0.0015 (12)
C210.0472 (5)0.0360 (5)0.0510 (6)0.0010 (4)0.0080 (4)−0.0026 (4)
C220.0589 (7)0.0536 (7)0.0559 (7)−0.0060 (5)0.0070 (5)0.0071 (6)
C230.0724 (8)0.0631 (8)0.0545 (7)0.0051 (6)−0.0003 (6)0.0091 (6)
C240.0488 (6)0.0609 (8)0.0592 (7)0.0081 (5)−0.0011 (5)−0.0104 (6)
C250.0484 (6)0.0497 (6)0.0677 (8)−0.0033 (5)0.0094 (5)−0.0097 (6)
C260.0531 (6)0.0394 (5)0.0575 (7)−0.0017 (5)0.0077 (5)0.0014 (5)
C410.0584 (7)0.0687 (9)0.0917 (11)0.0116 (7)0.0019 (7)0.0249 (8)
C510.0499 (6)0.0632 (8)0.0799 (10)−0.0034 (6)0.0008 (6)−0.0123 (7)
C17B0.0810 (14)0.0824 (12)0.110 (2)0.0107 (12)0.0532 (13)0.0286 (14)
C18B0.0976 (16)0.0484 (10)0.123 (3)0.0222 (10)0.0493 (15)0.0015 (12)
O13B0.0855 (9)0.0547 (6)0.0943 (13)0.0053 (6)0.0491 (9)0.0201 (8)
O15B0.0821 (9)0.0435 (8)0.1025 (12)0.0134 (6)0.0473 (8)0.0021 (7)
F4B0.0562 (6)0.1013 (10)0.0835 (6)0.0048 (5)−0.0161 (5)−0.0034 (7)
F4A—C241.3683 (19)C23—C241.371 (2)
F4B—C241.28 (2)C24—C251.368 (2)
O13A—C17A1.394 (4)C25—C261.3838 (19)
O13A—C131.383 (3)C12—H120.9300
O13B—C17B1.494 (19)C14—H140.9300
O13B—C131.329 (10)C16—H160.9300
O15A—C151.372 (3)C17A—H17A0.9600
O15A—C18A1.414 (3)C17A—H17B0.9600
O15B—C151.349 (11)C17A—H17C0.9600
O15B—C18B1.521 (17)C17B—H17F0.9600
N1—C21.3714 (14)C17B—H17E0.9600
N1—C51.3898 (16)C17B—H17D0.9600
N1—C111.4379 (14)C18A—H18C0.9600
N3—C41.3780 (17)C18A—H18B0.9600
N3—C21.3167 (16)C18A—H18A0.9600
C2—C211.4725 (16)C18B—H18F0.9600
C4—C51.3623 (18)C18B—H18E0.9600
C4—C411.495 (2)C18B—H18D0.9600
C5—C511.4889 (19)C22—H220.9300
C11—C161.3740 (17)C23—H230.9300
C11—C121.3909 (18)C25—H250.9300
C12—C131.3870 (19)C26—H260.9300
C13—C141.392 (2)C41—H41B0.9600
C14—C151.378 (2)C41—H41A0.9600
C15—C161.3990 (18)C41—H41C0.9600
C21—C221.3892 (18)C51—H51C0.9600
C21—C261.3936 (17)C51—H51A0.9600
C22—C231.384 (2)C51—H51B0.9600
C13—O13A—C17A119.0 (2)C15—C14—H14120.00
C13—O13B—C17B116.3 (9)C11—C16—H16121.00
C15—O15A—C18A118.9 (2)C15—C16—H16121.00
C15—O15B—C18B112.1 (9)O13A—C17A—H17A109.00
C5—N1—C11124.89 (10)O13A—C17A—H17B110.00
C2—N1—C5106.66 (9)O13A—C17A—H17C109.00
C2—N1—C11127.70 (10)H17A—C17A—H17B110.00
C2—N3—C4106.08 (10)H17A—C17A—H17C109.00
N1—C2—C21125.18 (10)H17B—C17A—H17C109.00
N3—C2—C21123.61 (10)H17E—C17B—H17F109.00
N1—C2—N3111.20 (10)H17D—C17B—H17F109.00
C5—C4—C41128.92 (12)O13B—C17B—H17E109.00
N3—C4—C5110.28 (11)O13B—C17B—H17F110.00
N3—C4—C41120.78 (12)O13B—C17B—H17D109.00
C4—C5—C51131.59 (12)H17D—C17B—H17E109.00
N1—C5—C51122.63 (11)O15A—C18A—H18C109.00
N1—C5—C4105.78 (10)H18A—C18A—H18B109.00
N1—C11—C16119.05 (10)O15A—C18A—H18B109.00
C12—C11—C16122.28 (11)O15A—C18A—H18A109.00
N1—C11—C12118.67 (10)H18A—C18A—H18C109.00
C11—C12—C13117.85 (12)H18B—C18A—H18C109.00
O13A—C13—C14114.49 (14)O15B—C18B—H18D109.00
O13A—C13—C12124.31 (14)H18E—C18B—H18F110.00
O13B—C13—C14112.9 (4)H18D—C18B—H18F109.00
C12—C13—C14121.10 (13)O15B—C18B—H18E110.00
O13B—C13—C12122.2 (4)O15B—C18B—H18F110.00
C13—C14—C15119.66 (12)H18D—C18B—H18E109.00
C14—C15—C16120.34 (12)C21—C22—H22120.00
O15A—C15—C14123.67 (14)C23—C22—H22120.00
O15A—C15—C16115.94 (14)C24—C23—H23121.00
O15B—C15—C16110.8 (4)C22—C23—H23121.00
O15B—C15—C14127.3 (5)C24—C25—H25121.00
C11—C16—C15118.77 (12)C26—C25—H25121.00
C2—C21—C26118.14 (11)C21—C26—H26119.00
C2—C21—C22123.28 (11)C25—C26—H26119.00
C22—C21—C26118.55 (11)C4—C41—H41B109.00
C21—C22—C23120.72 (13)C4—C41—H41C109.00
C22—C23—C24118.57 (14)H41A—C41—H41B109.00
C23—C24—C25122.89 (13)C4—C41—H41A109.00
F4B—C24—C2395.5 (10)H41A—C41—H41C109.00
F4B—C24—C25140.3 (10)H41B—C41—H41C109.00
F4A—C24—C25117.94 (13)H51B—C51—H51C109.00
F4A—C24—C23119.18 (14)H51A—C51—H51B109.00
C24—C25—C26117.98 (12)H51A—C51—H51C109.00
C21—C26—C25121.28 (12)C5—C51—H51A109.00
C11—C12—H12121.00C5—C51—H51B109.00
C13—C12—H12121.00C5—C51—H51C109.00
C13—C14—H14120.00
C17A—O13A—C13—C14−179.4 (2)C41—C4—C5—N1178.65 (14)
C17A—O13A—C13—C12−3.0 (3)N3—C4—C5—C51−179.23 (14)
C18A—O15A—C15—C14−0.6 (3)C41—C4—C5—C51−1.1 (3)
C18A—O15A—C15—C16176.7 (2)C16—C11—C12—C13−0.2 (2)
C2—N1—C5—C4−0.21 (14)N1—C11—C16—C15−179.31 (12)
C11—N1—C2—N3−170.50 (11)C12—C11—C16—C150.7 (2)
C11—N1—C2—C2110.84 (19)N1—C11—C12—C13179.83 (12)
C11—N1—C5—C51−9.77 (19)C11—C12—C13—C140.1 (2)
C5—N1—C2—C21−178.82 (11)C11—C12—C13—O13A−176.12 (16)
C2—N1—C11—C1660.35 (17)O13A—C13—C14—C15176.05 (16)
C5—N1—C11—C1271.66 (16)C12—C13—C14—C15−0.5 (2)
C5—N1—C11—C16−108.35 (14)C13—C14—C15—C161.0 (2)
C2—N1—C11—C12−119.64 (14)C13—C14—C15—O15A178.23 (18)
C5—N1—C2—N3−0.15 (14)O15A—C15—C16—C11−178.53 (15)
C2—N1—C5—C51179.54 (12)C14—C15—C16—C11−1.1 (2)
C11—N1—C5—C4170.48 (11)C2—C21—C22—C23178.55 (12)
C4—N3—C2—N10.45 (14)C26—C21—C22—C230.6 (2)
C2—N3—C4—C41−178.92 (13)C2—C21—C26—C25−179.31 (12)
C2—N3—C4—C5−0.59 (15)C22—C21—C26—C25−1.22 (19)
C4—N3—C2—C21179.14 (11)C21—C22—C23—C240.3 (2)
N1—C2—C21—C26−151.86 (12)C22—C23—C24—F4A179.31 (14)
N3—C2—C21—C22−148.36 (13)C22—C23—C24—C25−0.6 (2)
N3—C2—C21—C2629.64 (18)F4A—C24—C25—C26−179.94 (14)
N1—C2—C21—C2230.15 (19)C23—C24—C25—C260.0 (2)
N3—C4—C5—N10.50 (15)C24—C25—C26—C210.9 (2)
Cg1 is the centroid of the N1/C2/N3/C4/C5 ring.
D—H···AD—HH···AD···AD—H···A
C23—H23···Cg1i0.932.993.8714 (16)159
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C2/N3/C4/C5 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C23—H23⋯Cg1i0.932.993.8714 (16)159

Symmetry code: (i) .

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Authors:  C J Jackson; D C Lamb; D E Kelly; S L Kelly
Journal:  FEMS Microbiol Lett       Date:  2000-11-15       Impact factor: 2.742

5.  1-(3,5-Dimethyl-phenyl)-2-(4-fluoro-phenyl)-4,5-dimethyl-1H-imidazole.

Authors:  S Rosepriya; A Thiruvalluvar; J Jayabharathi; N Srinivasan; R J Butcher; J P Jasinski; J A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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