Literature DB >> 22346870

Chloridobis(dimethyl-glyoximato-κN,N')(ethyl pyridine-4-carboxyl-ate-κN)cobalt(III) chloro-form monosolvate.

Ning Wang1, Xuzhuo Sun, Dongjin Wan, Jing Chen, Bo Li.   

Abstract

The title compound, [Co(C(4)H(7)N(2)O(2))(2)Cl(C(8)H(9)NO(2))]·CHCl(3), was synthesized as a model complex of vitamin B(12). The Co(III) cation displays an approximately octa-hedral coordination environment, being displaced by 0.0240 (15) Å from the mean plane of the four N atoms of the equatorial plane. The O-H distances in the dimethyl-glyoximate hy-droxy groups are 0.89 (6) and 1.14 (6) Å; such long O-H bonds are very common in cobaloxime derivatives. Weak classical O-H⋯N and non-classical C-H⋯Cl hydrogen-bonding interactions further consolidate the crystal packing.

Entities:  

Year:  2012        PMID: 22346870      PMCID: PMC3274923          DOI: 10.1107/S1600536812002449

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the chemistry of cobaloximes, see: Schrayzer (1968 ▶); Zangrando et al. (2003 ▶). For applications of cobaloximes in proton reduction, see: Raza­vet et al. (2005 ▶). For related structures, see: Bhuyan et al. (2007 ▶); Dutta et al. (2009 ▶); Mandal & Gupta (2005 ▶, 2007 ▶); William et al. (1973 ▶). For NMR research on O—H⋯O bridges, see: Bakac & Espenson (1984 ▶). For deprotonation of O—H⋯O bridges by BF3·Et2O, see: Magnuson & Weber (1974 ▶).

Experimental

Crystal data

[Co(C4H7N2O2)2Cl(C8H9NO2)]·CHCl3 M = 595.14 Orthorhombic, a = 10.053 (3) Å b = 22.357 (7) Å c = 23.099 (8) Å V = 5192 (3) Å3 Z = 8 Mo Kα radiation μ = 1.11 mm−1 T = 293 K 0.29 × 0.14 × 0.06 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.829, T max = 0.935 24393 measured reflections 4558 independent reflections 3483 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.158 S = 1.08 4558 reflections 310 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.25 e Å−3 Δρmin = −0.78 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002449/zl2444sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002449/zl2444Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C4H7N2O2)2Cl(C8H9NO2)]·CHCl3F(000) = 2432
Mr = 595.14Dx = 1.523 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5509 reflections
a = 10.053 (3) Åθ = 2.4–24.8°
b = 22.357 (7) ŵ = 1.11 mm1
c = 23.099 (8) ÅT = 293 K
V = 5192 (3) Å3Needle, brown
Z = 80.29 × 0.14 × 0.06 mm
Bruker APEXII area-detector diffractometer4558 independent reflections
Radiation source: fine-focus sealed tube3483 reflections with I > 2σ(I)
graphiteRint = 0.039
phi and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −11→9
Tmin = 0.829, Tmax = 0.935k = −26→26
24393 measured reflectionsl = −27→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0892P)2 + 4.4304P] where P = (Fo2 + 2Fc2)/3
4558 reflections(Δ/σ)max = 0.001
310 parametersΔρmax = 1.25 e Å3
0 restraintsΔρmin = −0.78 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.23591 (5)0.00646 (2)0.63484 (2)0.03477 (19)
Cl10.08443 (9)0.07824 (5)0.62035 (4)0.0473 (3)
N20.2686 (3)0.00560 (14)0.55381 (14)0.0387 (7)
N40.3608 (3)0.06594 (13)0.65679 (12)0.0364 (7)
O20.3577 (3)0.04186 (12)0.52883 (11)0.0489 (7)
N30.1977 (3)0.00927 (14)0.71495 (13)0.0407 (7)
N50.3706 (3)−0.05592 (13)0.64728 (13)0.0406 (7)
O40.4372 (3)0.09421 (12)0.61771 (11)0.0473 (7)
O30.1032 (3)−0.02516 (14)0.73944 (11)0.0558 (7)
C40.3647 (4)0.07978 (16)0.71110 (15)0.0384 (8)
N10.1090 (3)−0.05257 (15)0.61321 (13)0.0443 (8)
C20.2011 (4)−0.03273 (18)0.52384 (15)0.0438 (9)
O10.0261 (3)−0.07852 (15)0.65120 (13)0.0617 (9)
C30.2708 (3)0.04442 (17)0.74594 (16)0.0406 (9)
C10.1055 (4)−0.06658 (18)0.55898 (16)0.0478 (10)
C60.2193 (5)−0.0395 (2)0.45984 (18)0.0661 (13)
H6A0.3024−0.05910.45220.099*
H6B0.2193−0.00080.44200.099*
H6C0.1478−0.06300.44430.099*
C70.2605 (4)0.0476 (2)0.81032 (17)0.0580 (12)
H7A0.17230.05990.82100.087*
H7B0.32380.07600.82480.087*
H7C0.27870.00890.82660.087*
C90.4808 (4)−0.05867 (19)0.61441 (18)0.0514 (10)
H9A0.4920−0.03070.58500.062*
C80.4506 (4)0.12779 (18)0.73592 (18)0.0522 (10)
H8A0.50490.14460.70590.078*
H8B0.50650.11110.76550.078*
H8C0.39550.15850.75240.078*
C100.5774 (4)−0.10112 (19)0.6225 (2)0.0571 (11)
H10A0.6512−0.10220.59820.069*
C130.3583 (4)−0.09637 (18)0.68994 (17)0.0518 (10)
H13A0.2825−0.09530.71300.062*
C50.0100 (5)−0.1112 (2)0.5347 (2)0.0683 (13)
H5A−0.0506−0.12370.56450.102*
H5B0.0582−0.14520.52050.102*
H5C−0.0389−0.09330.50350.102*
C110.5646 (5)−0.14251 (19)0.66696 (19)0.0548 (11)
C120.4530 (5)−0.1392 (2)0.70090 (19)0.0601 (12)
H12A0.4414−0.16590.73130.072*
O50.7541 (4)−0.1941 (2)0.6368 (2)0.1054 (16)
O60.6596 (6)−0.2213 (2)0.7205 (2)0.134 (2)
C140.6648 (6)−0.1899 (2)0.6788 (3)0.0737 (15)
C150.8560 (7)−0.2399 (3)0.6427 (4)0.130 (3)
H15A0.8681−0.24980.68330.156*
H15B0.9399−0.22520.62770.156*
C160.8152 (9)−0.2930 (4)0.6107 (3)0.127 (3)
H16A0.8815−0.32360.61490.191*
H16B0.8053−0.28310.57050.191*
H16C0.7318−0.30720.62560.191*
Cl20.3288 (3)0.21423 (11)0.52934 (9)0.1438 (9)
Cl30.2763 (2)0.24725 (11)0.64763 (12)0.1451 (11)
Cl40.0658 (2)0.24578 (13)0.56700 (13)0.1782 (13)
C170.2161 (6)0.2156 (3)0.5858 (2)0.0785 (15)
H17A0.19830.17360.59540.094*
H20.406 (6)0.064 (3)0.568 (3)0.105 (19)*
H10.053 (6)−0.060 (3)0.683 (3)0.10 (2)*
U11U22U33U12U13U23
Co10.0347 (3)0.0443 (3)0.0253 (3)−0.0059 (2)0.00124 (18)0.00086 (19)
Cl10.0387 (5)0.0631 (6)0.0401 (5)0.0045 (4)−0.0007 (4)0.0016 (4)
N20.0389 (17)0.0465 (18)0.0306 (17)−0.0038 (14)0.0041 (12)0.0030 (13)
N40.0354 (16)0.0430 (16)0.0308 (16)−0.0006 (13)−0.0008 (12)0.0025 (13)
O20.0527 (17)0.0618 (17)0.0321 (14)−0.0127 (14)0.0075 (12)0.0021 (12)
N30.0389 (17)0.0536 (19)0.0296 (16)−0.0037 (14)0.0033 (13)0.0034 (13)
N50.0424 (17)0.0409 (17)0.0384 (17)−0.0040 (14)−0.0010 (13)0.0012 (13)
O40.0460 (15)0.0562 (16)0.0398 (15)−0.0164 (13)0.0049 (11)0.0074 (12)
O30.0506 (17)0.0802 (19)0.0366 (15)−0.0215 (15)0.0116 (12)0.0071 (14)
C40.0384 (19)0.0416 (19)0.035 (2)0.0047 (16)−0.0036 (15)0.0002 (15)
N10.0430 (18)0.0542 (19)0.0358 (18)−0.0111 (15)−0.0005 (13)0.0029 (14)
C20.052 (2)0.051 (2)0.0293 (18)−0.0015 (18)−0.0021 (17)−0.0057 (17)
O10.065 (2)0.078 (2)0.0422 (17)−0.0358 (17)0.0040 (14)0.0046 (16)
C30.037 (2)0.056 (2)0.0287 (18)0.0056 (17)−0.0011 (15)−0.0013 (17)
C10.052 (2)0.055 (2)0.037 (2)−0.0067 (19)−0.0063 (17)−0.0052 (18)
C60.075 (3)0.090 (4)0.033 (2)−0.014 (3)0.003 (2)−0.013 (2)
C70.057 (3)0.086 (3)0.031 (2)−0.006 (2)0.0015 (17)−0.005 (2)
C90.047 (2)0.051 (2)0.056 (3)0.0002 (19)0.0069 (19)0.0105 (19)
C80.056 (2)0.056 (2)0.044 (2)−0.007 (2)−0.0107 (19)−0.0058 (18)
C100.049 (2)0.054 (2)0.068 (3)0.004 (2)0.004 (2)0.002 (2)
C130.059 (3)0.054 (2)0.042 (2)−0.001 (2)0.0035 (18)0.0085 (19)
C50.081 (3)0.070 (3)0.053 (3)−0.029 (3)−0.013 (2)−0.007 (2)
C110.061 (3)0.048 (2)0.055 (3)0.003 (2)−0.015 (2)−0.002 (2)
C120.080 (3)0.052 (2)0.048 (3)0.001 (2)−0.006 (2)0.012 (2)
O50.074 (3)0.078 (3)0.164 (5)0.031 (2)0.017 (3)0.036 (3)
O60.180 (5)0.134 (4)0.089 (3)0.091 (4)−0.008 (3)0.028 (3)
C140.084 (4)0.057 (3)0.081 (4)0.016 (3)−0.028 (3)0.000 (3)
C150.086 (5)0.098 (5)0.207 (9)0.052 (4)0.016 (5)0.038 (6)
C160.151 (8)0.114 (6)0.118 (6)0.072 (6)0.003 (5)0.020 (5)
Cl20.159 (2)0.167 (2)0.1055 (15)0.0384 (17)0.0411 (14)0.0400 (13)
Cl30.1212 (16)0.178 (2)0.1355 (19)0.0474 (15)−0.0562 (14)−0.0717 (16)
Cl40.1211 (17)0.229 (3)0.185 (3)0.0840 (18)−0.0778 (17)−0.087 (2)
C170.081 (4)0.079 (4)0.075 (4)−0.007 (3)−0.009 (3)0.001 (3)
Co1—N31.891 (3)C7—H7C0.9600
Co1—N41.898 (3)C9—C101.370 (6)
Co1—N21.901 (3)C9—H9A0.9300
Co1—N11.902 (3)C8—H8A0.9600
Co1—N51.965 (3)C8—H8B0.9600
Co1—Cl12.2375 (12)C8—H8C0.9600
N2—C21.294 (5)C10—C111.389 (6)
N2—O21.339 (4)C10—H10A0.9300
N4—C41.293 (5)C13—C121.374 (6)
N4—O41.344 (4)C13—H13A0.9300
O2—H21.14 (6)C5—H5A0.9600
N3—C31.292 (5)C5—H5B0.9600
N3—O31.347 (4)C5—H5C0.9600
N5—C131.343 (5)C11—C121.371 (6)
N5—C91.345 (5)C11—C141.487 (6)
O4—H21.37 (6)C12—H12A0.9300
C4—C31.471 (5)O5—C141.325 (7)
C4—C81.492 (5)O5—C151.454 (7)
N1—C11.292 (5)O6—C141.194 (7)
N1—O11.342 (4)C15—C161.456 (11)
C2—C11.468 (6)C15—H15A0.9700
C2—C61.497 (5)C15—H15B0.9700
O1—H10.89 (6)C16—H16A0.9600
C3—C71.492 (5)C16—H16B0.9600
C1—C51.493 (6)C16—H16C0.9600
C6—H6A0.9600Cl2—C171.728 (6)
C6—H6B0.9600Cl3—C171.705 (6)
C6—H6C0.9600Cl4—C171.712 (6)
C7—H7A0.9600C17—H17A0.9800
C7—H7B0.9600
N3—Co1—N481.36 (13)H7A—C7—H7B109.5
N3—Co1—N2177.80 (13)C3—C7—H7C109.5
N4—Co1—N298.96 (13)H7A—C7—H7C109.5
N3—Co1—N198.27 (13)H7B—C7—H7C109.5
N4—Co1—N1179.30 (14)N5—C9—C10122.6 (4)
N2—Co1—N181.39 (13)N5—C9—H9A118.7
N3—Co1—N591.17 (13)C10—C9—H9A118.7
N4—Co1—N590.15 (13)C4—C8—H8A109.5
N2—Co1—N591.00 (13)C4—C8—H8B109.5
N1—Co1—N590.45 (14)H8A—C8—H8B109.5
N3—Co1—Cl189.10 (10)C4—C8—H8C109.5
N4—Co1—Cl189.28 (9)H8A—C8—H8C109.5
N2—Co1—Cl188.73 (10)H8B—C8—H8C109.5
N1—Co1—Cl190.12 (11)C9—C10—C11119.8 (4)
N5—Co1—Cl1179.33 (10)C9—C10—H10A120.1
C2—N2—O2121.4 (3)C11—C10—H10A120.1
C2—N2—Co1116.3 (3)N5—C13—C12122.7 (4)
O2—N2—Co1122.3 (2)N5—C13—H13A118.6
C4—N4—O4121.5 (3)C12—C13—H13A118.6
C4—N4—Co1116.6 (2)C1—C5—H5A109.5
O4—N4—Co1121.9 (2)C1—C5—H5B109.5
N2—O2—H2102 (3)H5A—C5—H5B109.5
C3—N3—O3121.0 (3)C1—C5—H5C109.5
C3—N3—Co1116.5 (3)H5A—C5—H5C109.5
O3—N3—Co1122.4 (2)H5B—C5—H5C109.5
C13—N5—C9117.3 (4)C12—C11—C10117.6 (4)
C13—N5—Co1121.5 (3)C12—C11—C14119.2 (5)
C9—N5—Co1121.2 (3)C10—C11—C14123.2 (5)
N4—O4—H2102 (2)C11—C12—C13120.0 (4)
N4—C4—C3112.5 (3)C11—C12—H12A120.0
N4—C4—C8124.3 (3)C13—C12—H12A120.0
C3—C4—C8123.2 (3)C14—O5—C15117.3 (5)
C1—N1—O1120.8 (3)O6—C14—O5125.3 (5)
C1—N1—Co1116.2 (3)O6—C14—C11122.5 (6)
O1—N1—Co1123.0 (2)O5—C14—C11112.1 (5)
N2—C2—C1112.9 (3)O5—C15—C16109.1 (7)
N2—C2—C6122.1 (4)O5—C15—H15A109.9
C1—C2—C6125.0 (4)C16—C15—H15A109.9
N1—O1—H199 (4)O5—C15—H15B109.9
N3—C3—C4112.9 (3)C16—C15—H15B109.9
N3—C3—C7122.8 (4)H15A—C15—H15B108.3
C4—C3—C7124.3 (3)C15—C16—H16A109.5
N1—C1—C2113.1 (3)C15—C16—H16B109.5
N1—C1—C5122.9 (4)H16A—C16—H16B109.5
C2—C1—C5123.9 (4)C15—C16—H16C109.5
C2—C6—H6A109.5H16A—C16—H16C109.5
C2—C6—H6B109.5H16B—C16—H16C109.5
H6A—C6—H6B109.5Cl3—C17—Cl4111.2 (3)
C2—C6—H6C109.5Cl3—C17—Cl2114.0 (3)
H6A—C6—H6C109.5Cl4—C17—Cl2113.2 (4)
H6B—C6—H6C109.5Cl3—C17—H17A105.9
C3—C7—H7A109.5Cl4—C17—H17A105.9
C3—C7—H7B109.5Cl2—C17—H17A105.9
D—H···AD—HH···AD···AD—H···A
O2—H2···O41.14 (6)1.37 (6)2.495 (4)168 (5)
O2—H2···N41.14 (6)2.10 (6)3.004 (4)133 (4)
O1—H1···O30.89 (6)1.60 (6)2.486 (4)177 (6)
O1—H1···N30.89 (6)2.25 (6)3.000 (4)142 (5)
C17—H17A···Cl10.982.493.437 (6)163
C6—H6C···Cl1i0.962.793.675 (5)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O41.14 (6)1.37 (6)2.495 (4)168 (5)
O2—H2⋯N41.14 (6)2.10 (6)3.004 (4)133 (4)
O1—H1⋯O30.89 (6)1.60 (6)2.486 (4)177 (6)
O1—H1⋯N30.89 (6)2.25 (6)3.000 (4)142 (5)
C17—H17A⋯Cl10.982.493.437 (6)163
C6—H6C⋯Cl1i0.962.793.675 (5)153

Symmetry code: (i) .

  2 in total

1.  Proton electroreduction catalyzed by cobaloximes: functional models for hydrogenases.

Authors:  Mathieu Razavet; Vincent Artero; Marc Fontecave
Journal:  Inorg Chem       Date:  2005-06-27       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Tetra-kis(ethyl pyridine-4-carboxyl-ate-κN)bis-(thio-cyanato-κN)cobalt(II).

Authors:  Xiu-Ling Feng; Yu-Ping Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  1 in total

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