| Literature DB >> 22346870 |
Ning Wang1, Xuzhuo Sun, Dongjin Wan, Jing Chen, Bo Li.
Abstract
The title compound, [Co(C(4)H(7)N(2)O(2))(2)Cl(C(8)H(9)NO(2))]·CHCl(3), was synthesized as a model complex of vitamin B(12). The Co(III) cation displays an approximately octa-hedral coordination environment, being displaced by 0.0240 (15) Å from the mean plane of the four N atoms of the equatorial plane. The O-H distances in the dimethyl-glyoximate hy-droxy groups are 0.89 (6) and 1.14 (6) Å; such long O-H bonds are very common in cobaloxime derivatives. Weak classical O-H⋯N and non-classical C-H⋯Cl hydrogen-bonding interactions further consolidate the crystal packing.Entities:
Year: 2012 PMID: 22346870 PMCID: PMC3274923 DOI: 10.1107/S1600536812002449
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C4H7N2O2)2Cl(C8H9NO2)]·CHCl3 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5509 reflections |
| θ = 2.4–24.8° | |
| µ = 1.11 mm−1 | |
| Needle, brown | |
| 0.29 × 0.14 × 0.06 mm |
| Bruker APEXII area-detector diffractometer | 4558 independent reflections |
| Radiation source: fine-focus sealed tube | 3483 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 24393 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4558 reflections | (Δ/σ)max = 0.001 |
| 310 parameters | Δρmax = 1.25 e Å−3 |
| 0 restraints | Δρmin = −0.78 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.23591 (5) | 0.00646 (2) | 0.63484 (2) | 0.03477 (19) | |
| Cl1 | 0.08443 (9) | 0.07824 (5) | 0.62035 (4) | 0.0473 (3) | |
| N2 | 0.2686 (3) | 0.00560 (14) | 0.55381 (14) | 0.0387 (7) | |
| N4 | 0.3608 (3) | 0.06594 (13) | 0.65679 (12) | 0.0364 (7) | |
| O2 | 0.3577 (3) | 0.04186 (12) | 0.52883 (11) | 0.0489 (7) | |
| N3 | 0.1977 (3) | 0.00927 (14) | 0.71495 (13) | 0.0407 (7) | |
| N5 | 0.3706 (3) | −0.05592 (13) | 0.64728 (13) | 0.0406 (7) | |
| O4 | 0.4372 (3) | 0.09421 (12) | 0.61771 (11) | 0.0473 (7) | |
| O3 | 0.1032 (3) | −0.02516 (14) | 0.73944 (11) | 0.0558 (7) | |
| C4 | 0.3647 (4) | 0.07978 (16) | 0.71110 (15) | 0.0384 (8) | |
| N1 | 0.1090 (3) | −0.05257 (15) | 0.61321 (13) | 0.0443 (8) | |
| C2 | 0.2011 (4) | −0.03273 (18) | 0.52384 (15) | 0.0438 (9) | |
| O1 | 0.0261 (3) | −0.07852 (15) | 0.65120 (13) | 0.0617 (9) | |
| C3 | 0.2708 (3) | 0.04442 (17) | 0.74594 (16) | 0.0406 (9) | |
| C1 | 0.1055 (4) | −0.06658 (18) | 0.55898 (16) | 0.0478 (10) | |
| C6 | 0.2193 (5) | −0.0395 (2) | 0.45984 (18) | 0.0661 (13) | |
| H6A | 0.3024 | −0.0591 | 0.4522 | 0.099* | |
| H6B | 0.2193 | −0.0008 | 0.4420 | 0.099* | |
| H6C | 0.1478 | −0.0630 | 0.4443 | 0.099* | |
| C7 | 0.2605 (4) | 0.0476 (2) | 0.81032 (17) | 0.0580 (12) | |
| H7A | 0.1723 | 0.0599 | 0.8210 | 0.087* | |
| H7B | 0.3238 | 0.0760 | 0.8248 | 0.087* | |
| H7C | 0.2787 | 0.0089 | 0.8266 | 0.087* | |
| C9 | 0.4808 (4) | −0.05867 (19) | 0.61441 (18) | 0.0514 (10) | |
| H9A | 0.4920 | −0.0307 | 0.5850 | 0.062* | |
| C8 | 0.4506 (4) | 0.12779 (18) | 0.73592 (18) | 0.0522 (10) | |
| H8A | 0.5049 | 0.1446 | 0.7059 | 0.078* | |
| H8B | 0.5065 | 0.1111 | 0.7655 | 0.078* | |
| H8C | 0.3955 | 0.1585 | 0.7524 | 0.078* | |
| C10 | 0.5774 (4) | −0.10112 (19) | 0.6225 (2) | 0.0571 (11) | |
| H10A | 0.6512 | −0.1022 | 0.5982 | 0.069* | |
| C13 | 0.3583 (4) | −0.09637 (18) | 0.68994 (17) | 0.0518 (10) | |
| H13A | 0.2825 | −0.0953 | 0.7130 | 0.062* | |
| C5 | 0.0100 (5) | −0.1112 (2) | 0.5347 (2) | 0.0683 (13) | |
| H5A | −0.0506 | −0.1237 | 0.5645 | 0.102* | |
| H5B | 0.0582 | −0.1452 | 0.5205 | 0.102* | |
| H5C | −0.0389 | −0.0933 | 0.5035 | 0.102* | |
| C11 | 0.5646 (5) | −0.14251 (19) | 0.66696 (19) | 0.0548 (11) | |
| C12 | 0.4530 (5) | −0.1392 (2) | 0.70090 (19) | 0.0601 (12) | |
| H12A | 0.4414 | −0.1659 | 0.7313 | 0.072* | |
| O5 | 0.7541 (4) | −0.1941 (2) | 0.6368 (2) | 0.1054 (16) | |
| O6 | 0.6596 (6) | −0.2213 (2) | 0.7205 (2) | 0.134 (2) | |
| C14 | 0.6648 (6) | −0.1899 (2) | 0.6788 (3) | 0.0737 (15) | |
| C15 | 0.8560 (7) | −0.2399 (3) | 0.6427 (4) | 0.130 (3) | |
| H15A | 0.8681 | −0.2498 | 0.6833 | 0.156* | |
| H15B | 0.9399 | −0.2252 | 0.6277 | 0.156* | |
| C16 | 0.8152 (9) | −0.2930 (4) | 0.6107 (3) | 0.127 (3) | |
| H16A | 0.8815 | −0.3236 | 0.6149 | 0.191* | |
| H16B | 0.8053 | −0.2831 | 0.5705 | 0.191* | |
| H16C | 0.7318 | −0.3072 | 0.6256 | 0.191* | |
| Cl2 | 0.3288 (3) | 0.21423 (11) | 0.52934 (9) | 0.1438 (9) | |
| Cl3 | 0.2763 (2) | 0.24725 (11) | 0.64763 (12) | 0.1451 (11) | |
| Cl4 | 0.0658 (2) | 0.24578 (13) | 0.56700 (13) | 0.1782 (13) | |
| C17 | 0.2161 (6) | 0.2156 (3) | 0.5858 (2) | 0.0785 (15) | |
| H17A | 0.1983 | 0.1736 | 0.5954 | 0.094* | |
| H2 | 0.406 (6) | 0.064 (3) | 0.568 (3) | 0.105 (19)* | |
| H1 | 0.053 (6) | −0.060 (3) | 0.683 (3) | 0.10 (2)* |
| Co1 | 0.0347 (3) | 0.0443 (3) | 0.0253 (3) | −0.0059 (2) | 0.00124 (18) | 0.00086 (19) |
| Cl1 | 0.0387 (5) | 0.0631 (6) | 0.0401 (5) | 0.0045 (4) | −0.0007 (4) | 0.0016 (4) |
| N2 | 0.0389 (17) | 0.0465 (18) | 0.0306 (17) | −0.0038 (14) | 0.0041 (12) | 0.0030 (13) |
| N4 | 0.0354 (16) | 0.0430 (16) | 0.0308 (16) | −0.0006 (13) | −0.0008 (12) | 0.0025 (13) |
| O2 | 0.0527 (17) | 0.0618 (17) | 0.0321 (14) | −0.0127 (14) | 0.0075 (12) | 0.0021 (12) |
| N3 | 0.0389 (17) | 0.0536 (19) | 0.0296 (16) | −0.0037 (14) | 0.0033 (13) | 0.0034 (13) |
| N5 | 0.0424 (17) | 0.0409 (17) | 0.0384 (17) | −0.0040 (14) | −0.0010 (13) | 0.0012 (13) |
| O4 | 0.0460 (15) | 0.0562 (16) | 0.0398 (15) | −0.0164 (13) | 0.0049 (11) | 0.0074 (12) |
| O3 | 0.0506 (17) | 0.0802 (19) | 0.0366 (15) | −0.0215 (15) | 0.0116 (12) | 0.0071 (14) |
| C4 | 0.0384 (19) | 0.0416 (19) | 0.035 (2) | 0.0047 (16) | −0.0036 (15) | 0.0002 (15) |
| N1 | 0.0430 (18) | 0.0542 (19) | 0.0358 (18) | −0.0111 (15) | −0.0005 (13) | 0.0029 (14) |
| C2 | 0.052 (2) | 0.051 (2) | 0.0293 (18) | −0.0015 (18) | −0.0021 (17) | −0.0057 (17) |
| O1 | 0.065 (2) | 0.078 (2) | 0.0422 (17) | −0.0358 (17) | 0.0040 (14) | 0.0046 (16) |
| C3 | 0.037 (2) | 0.056 (2) | 0.0287 (18) | 0.0056 (17) | −0.0011 (15) | −0.0013 (17) |
| C1 | 0.052 (2) | 0.055 (2) | 0.037 (2) | −0.0067 (19) | −0.0063 (17) | −0.0052 (18) |
| C6 | 0.075 (3) | 0.090 (4) | 0.033 (2) | −0.014 (3) | 0.003 (2) | −0.013 (2) |
| C7 | 0.057 (3) | 0.086 (3) | 0.031 (2) | −0.006 (2) | 0.0015 (17) | −0.005 (2) |
| C9 | 0.047 (2) | 0.051 (2) | 0.056 (3) | 0.0002 (19) | 0.0069 (19) | 0.0105 (19) |
| C8 | 0.056 (2) | 0.056 (2) | 0.044 (2) | −0.007 (2) | −0.0107 (19) | −0.0058 (18) |
| C10 | 0.049 (2) | 0.054 (2) | 0.068 (3) | 0.004 (2) | 0.004 (2) | 0.002 (2) |
| C13 | 0.059 (3) | 0.054 (2) | 0.042 (2) | −0.001 (2) | 0.0035 (18) | 0.0085 (19) |
| C5 | 0.081 (3) | 0.070 (3) | 0.053 (3) | −0.029 (3) | −0.013 (2) | −0.007 (2) |
| C11 | 0.061 (3) | 0.048 (2) | 0.055 (3) | 0.003 (2) | −0.015 (2) | −0.002 (2) |
| C12 | 0.080 (3) | 0.052 (2) | 0.048 (3) | 0.001 (2) | −0.006 (2) | 0.012 (2) |
| O5 | 0.074 (3) | 0.078 (3) | 0.164 (5) | 0.031 (2) | 0.017 (3) | 0.036 (3) |
| O6 | 0.180 (5) | 0.134 (4) | 0.089 (3) | 0.091 (4) | −0.008 (3) | 0.028 (3) |
| C14 | 0.084 (4) | 0.057 (3) | 0.081 (4) | 0.016 (3) | −0.028 (3) | 0.000 (3) |
| C15 | 0.086 (5) | 0.098 (5) | 0.207 (9) | 0.052 (4) | 0.016 (5) | 0.038 (6) |
| C16 | 0.151 (8) | 0.114 (6) | 0.118 (6) | 0.072 (6) | 0.003 (5) | 0.020 (5) |
| Cl2 | 0.159 (2) | 0.167 (2) | 0.1055 (15) | 0.0384 (17) | 0.0411 (14) | 0.0400 (13) |
| Cl3 | 0.1212 (16) | 0.178 (2) | 0.1355 (19) | 0.0474 (15) | −0.0562 (14) | −0.0717 (16) |
| Cl4 | 0.1211 (17) | 0.229 (3) | 0.185 (3) | 0.0840 (18) | −0.0778 (17) | −0.087 (2) |
| C17 | 0.081 (4) | 0.079 (4) | 0.075 (4) | −0.007 (3) | −0.009 (3) | 0.001 (3) |
| Co1—N3 | 1.891 (3) | C7—H7C | 0.9600 |
| Co1—N4 | 1.898 (3) | C9—C10 | 1.370 (6) |
| Co1—N2 | 1.901 (3) | C9—H9A | 0.9300 |
| Co1—N1 | 1.902 (3) | C8—H8A | 0.9600 |
| Co1—N5 | 1.965 (3) | C8—H8B | 0.9600 |
| Co1—Cl1 | 2.2375 (12) | C8—H8C | 0.9600 |
| N2—C2 | 1.294 (5) | C10—C11 | 1.389 (6) |
| N2—O2 | 1.339 (4) | C10—H10A | 0.9300 |
| N4—C4 | 1.293 (5) | C13—C12 | 1.374 (6) |
| N4—O4 | 1.344 (4) | C13—H13A | 0.9300 |
| O2—H2 | 1.14 (6) | C5—H5A | 0.9600 |
| N3—C3 | 1.292 (5) | C5—H5B | 0.9600 |
| N3—O3 | 1.347 (4) | C5—H5C | 0.9600 |
| N5—C13 | 1.343 (5) | C11—C12 | 1.371 (6) |
| N5—C9 | 1.345 (5) | C11—C14 | 1.487 (6) |
| O4—H2 | 1.37 (6) | C12—H12A | 0.9300 |
| C4—C3 | 1.471 (5) | O5—C14 | 1.325 (7) |
| C4—C8 | 1.492 (5) | O5—C15 | 1.454 (7) |
| N1—C1 | 1.292 (5) | O6—C14 | 1.194 (7) |
| N1—O1 | 1.342 (4) | C15—C16 | 1.456 (11) |
| C2—C1 | 1.468 (6) | C15—H15A | 0.9700 |
| C2—C6 | 1.497 (5) | C15—H15B | 0.9700 |
| O1—H1 | 0.89 (6) | C16—H16A | 0.9600 |
| C3—C7 | 1.492 (5) | C16—H16B | 0.9600 |
| C1—C5 | 1.493 (6) | C16—H16C | 0.9600 |
| C6—H6A | 0.9600 | Cl2—C17 | 1.728 (6) |
| C6—H6B | 0.9600 | Cl3—C17 | 1.705 (6) |
| C6—H6C | 0.9600 | Cl4—C17 | 1.712 (6) |
| C7—H7A | 0.9600 | C17—H17A | 0.9800 |
| C7—H7B | 0.9600 | ||
| N3—Co1—N4 | 81.36 (13) | H7A—C7—H7B | 109.5 |
| N3—Co1—N2 | 177.80 (13) | C3—C7—H7C | 109.5 |
| N4—Co1—N2 | 98.96 (13) | H7A—C7—H7C | 109.5 |
| N3—Co1—N1 | 98.27 (13) | H7B—C7—H7C | 109.5 |
| N4—Co1—N1 | 179.30 (14) | N5—C9—C10 | 122.6 (4) |
| N2—Co1—N1 | 81.39 (13) | N5—C9—H9A | 118.7 |
| N3—Co1—N5 | 91.17 (13) | C10—C9—H9A | 118.7 |
| N4—Co1—N5 | 90.15 (13) | C4—C8—H8A | 109.5 |
| N2—Co1—N5 | 91.00 (13) | C4—C8—H8B | 109.5 |
| N1—Co1—N5 | 90.45 (14) | H8A—C8—H8B | 109.5 |
| N3—Co1—Cl1 | 89.10 (10) | C4—C8—H8C | 109.5 |
| N4—Co1—Cl1 | 89.28 (9) | H8A—C8—H8C | 109.5 |
| N2—Co1—Cl1 | 88.73 (10) | H8B—C8—H8C | 109.5 |
| N1—Co1—Cl1 | 90.12 (11) | C9—C10—C11 | 119.8 (4) |
| N5—Co1—Cl1 | 179.33 (10) | C9—C10—H10A | 120.1 |
| C2—N2—O2 | 121.4 (3) | C11—C10—H10A | 120.1 |
| C2—N2—Co1 | 116.3 (3) | N5—C13—C12 | 122.7 (4) |
| O2—N2—Co1 | 122.3 (2) | N5—C13—H13A | 118.6 |
| C4—N4—O4 | 121.5 (3) | C12—C13—H13A | 118.6 |
| C4—N4—Co1 | 116.6 (2) | C1—C5—H5A | 109.5 |
| O4—N4—Co1 | 121.9 (2) | C1—C5—H5B | 109.5 |
| N2—O2—H2 | 102 (3) | H5A—C5—H5B | 109.5 |
| C3—N3—O3 | 121.0 (3) | C1—C5—H5C | 109.5 |
| C3—N3—Co1 | 116.5 (3) | H5A—C5—H5C | 109.5 |
| O3—N3—Co1 | 122.4 (2) | H5B—C5—H5C | 109.5 |
| C13—N5—C9 | 117.3 (4) | C12—C11—C10 | 117.6 (4) |
| C13—N5—Co1 | 121.5 (3) | C12—C11—C14 | 119.2 (5) |
| C9—N5—Co1 | 121.2 (3) | C10—C11—C14 | 123.2 (5) |
| N4—O4—H2 | 102 (2) | C11—C12—C13 | 120.0 (4) |
| N4—C4—C3 | 112.5 (3) | C11—C12—H12A | 120.0 |
| N4—C4—C8 | 124.3 (3) | C13—C12—H12A | 120.0 |
| C3—C4—C8 | 123.2 (3) | C14—O5—C15 | 117.3 (5) |
| C1—N1—O1 | 120.8 (3) | O6—C14—O5 | 125.3 (5) |
| C1—N1—Co1 | 116.2 (3) | O6—C14—C11 | 122.5 (6) |
| O1—N1—Co1 | 123.0 (2) | O5—C14—C11 | 112.1 (5) |
| N2—C2—C1 | 112.9 (3) | O5—C15—C16 | 109.1 (7) |
| N2—C2—C6 | 122.1 (4) | O5—C15—H15A | 109.9 |
| C1—C2—C6 | 125.0 (4) | C16—C15—H15A | 109.9 |
| N1—O1—H1 | 99 (4) | O5—C15—H15B | 109.9 |
| N3—C3—C4 | 112.9 (3) | C16—C15—H15B | 109.9 |
| N3—C3—C7 | 122.8 (4) | H15A—C15—H15B | 108.3 |
| C4—C3—C7 | 124.3 (3) | C15—C16—H16A | 109.5 |
| N1—C1—C2 | 113.1 (3) | C15—C16—H16B | 109.5 |
| N1—C1—C5 | 122.9 (4) | H16A—C16—H16B | 109.5 |
| C2—C1—C5 | 123.9 (4) | C15—C16—H16C | 109.5 |
| C2—C6—H6A | 109.5 | H16A—C16—H16C | 109.5 |
| C2—C6—H6B | 109.5 | H16B—C16—H16C | 109.5 |
| H6A—C6—H6B | 109.5 | Cl3—C17—Cl4 | 111.2 (3) |
| C2—C6—H6C | 109.5 | Cl3—C17—Cl2 | 114.0 (3) |
| H6A—C6—H6C | 109.5 | Cl4—C17—Cl2 | 113.2 (4) |
| H6B—C6—H6C | 109.5 | Cl3—C17—H17A | 105.9 |
| C3—C7—H7A | 109.5 | Cl4—C17—H17A | 105.9 |
| C3—C7—H7B | 109.5 | Cl2—C17—H17A | 105.9 |
| H··· | ||||
| O2—H2···O4 | 1.14 (6) | 1.37 (6) | 2.495 (4) | 168 (5) |
| O2—H2···N4 | 1.14 (6) | 2.10 (6) | 3.004 (4) | 133 (4) |
| O1—H1···O3 | 0.89 (6) | 1.60 (6) | 2.486 (4) | 177 (6) |
| O1—H1···N3 | 0.89 (6) | 2.25 (6) | 3.000 (4) | 142 (5) |
| C17—H17A···Cl1 | 0.98 | 2.49 | 3.437 (6) | 163 |
| C6—H6C···Cl1i | 0.96 | 2.79 | 3.675 (5) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O4 | 1.14 (6) | 1.37 (6) | 2.495 (4) | 168 (5) |
| O2—H2⋯N4 | 1.14 (6) | 2.10 (6) | 3.004 (4) | 133 (4) |
| O1—H1⋯O3 | 0.89 (6) | 1.60 (6) | 2.486 (4) | 177 (6) |
| O1—H1⋯N3 | 0.89 (6) | 2.25 (6) | 3.000 (4) | 142 (5) |
| C17—H17 | 0.98 | 2.49 | 3.437 (6) | 163 |
| C6—H6 | 0.96 | 2.79 | 3.675 (5) | 153 |
Symmetry code: (i) .