| Literature DB >> 22346861 |
Xun-Gao Liu, Liang Shen, Qi-Suo Cai, Ma Luo.
Abstract
In the title homochiral mononuclear compound, [Zn(NO(3))(2)(C(6)H(12)N(4)O(2))(2)], the Zn(II) atom is located on a twofold rotation axis and coordinated by two N atoms from two ligands and two O atoms from two NO(3) (-) anions, adopting a distorted tetra-hedral coordination geometry. The compound is enanti-omerically pure and corresponds to the S diastereoisomer, with the optical activity originating from the chiral ligand. In the crystal, mol-ecules are connected into three-dimensional supra-molecular networks through O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds.Entities:
Year: 2012 PMID: 22346861 PMCID: PMC3274914 DOI: 10.1107/S1600536812001754
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(NO3)2(C6H12N4O2)2] | |
| Mo | |
| Tetragonal, | Cell parameters from 7446 reflections |
| Hall symbol: P 4abw 2nw | θ = 1.7–27.5° |
| µ = 1.22 mm−1 | |
| Needle, colourless | |
| 0.36 × 0.18 × 0.12 mm | |
| Bruker APEX DUO diffractometer | 2463 independent reflections |
| Radiation source: fine-focus sealed tube | 2154 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 7446 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2463 reflections | Δρmax = 0.32 e Å−3 |
| 154 parameters | Δρmin = −0.23 e Å−3 |
| 378 restraints | Absolute structure: Flack (1983), 993 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.022 (15) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.92340 (3) | 0.92340 (3) | 1.0000 | 0.03222 (13) | |
| O1 | 0.72436 (18) | 0.90461 (18) | 0.95521 (12) | 0.0417 (5) | |
| H1 | 0.7021 | 0.8493 | 0.9817 | 0.063* | |
| O2 | 1.13628 (15) | 0.75723 (17) | 0.67187 (13) | 0.0336 (4) | |
| H2 | 1.1479 | 0.8235 | 0.6777 | 0.050* | |
| O3 | 1.09002 (17) | 0.89583 (19) | 1.02136 (13) | 0.0464 (5) | |
| O4 | 1.0802 (3) | 1.0273 (3) | 1.1173 (3) | 0.1176 (14) | |
| O5 | 1.2371 (2) | 0.9742 (3) | 1.0727 (2) | 0.0758 (9) | |
| N1 | 0.91797 (19) | 0.85483 (18) | 0.87379 (13) | 0.0285 (5) | |
| N2 | 1.00505 (19) | 0.81575 (19) | 0.82025 (13) | 0.0279 (5) | |
| N3 | 0.84957 (17) | 0.80180 (17) | 0.74473 (15) | 0.0271 (4) | |
| N4 | 0.7738 (2) | 0.7823 (2) | 0.67330 (16) | 0.0427 (6) | |
| H4B | 0.7928 | 0.7208 | 0.6440 | 0.064* | |
| H4C | 0.7753 | 0.8388 | 0.6345 | 0.064* | |
| N5 | 1.1372 (2) | 0.9678 (2) | 1.07029 (17) | 0.0417 (6) | |
| C1 | 0.8266 (2) | 0.8474 (2) | 0.82697 (16) | 0.0273 (5) | |
| C2 | 0.9608 (2) | 0.7841 (2) | 0.74215 (16) | 0.0262 (5) | |
| C3 | 0.7171 (2) | 0.8883 (2) | 0.85876 (17) | 0.0332 (6) | |
| H3 | 0.6595 | 0.8343 | 0.8446 | 0.040* | |
| C4 | 0.6903 (3) | 0.9988 (3) | 0.8141 (2) | 0.0467 (8) | |
| H4D | 0.6216 | 1.0261 | 0.8377 | 0.070* | |
| H4E | 0.6844 | 0.9892 | 0.7490 | 0.070* | |
| H4F | 0.7479 | 1.0507 | 0.8274 | 0.070* | |
| C5 | 1.0219 (2) | 0.7390 (2) | 0.66148 (17) | 0.0299 (6) | |
| H5 | 0.9968 | 0.7776 | 0.6063 | 0.036* | |
| C6 | 1.0044 (3) | 0.6164 (3) | 0.6482 (2) | 0.0460 (8) | |
| H6A | 1.0389 | 0.5934 | 0.5923 | 0.069* | |
| H6B | 0.9268 | 0.6011 | 0.6452 | 0.069* | |
| H6C | 1.0363 | 0.5770 | 0.6987 | 0.069* |
| Zn1 | 0.03548 (17) | 0.03548 (17) | 0.02569 (18) | 0.0024 (2) | 0.00483 (13) | −0.00483 (13) |
| O1 | 0.0449 (12) | 0.0468 (14) | 0.0334 (9) | −0.0032 (10) | 0.0117 (9) | 0.0021 (9) |
| O2 | 0.0277 (10) | 0.0310 (11) | 0.0420 (9) | 0.0005 (8) | 0.0038 (8) | −0.0056 (9) |
| O3 | 0.0380 (12) | 0.0514 (13) | 0.0497 (10) | 0.0025 (9) | −0.0045 (9) | −0.0172 (9) |
| O4 | 0.0629 (19) | 0.112 (3) | 0.178 (3) | 0.0013 (19) | −0.005 (2) | −0.105 (3) |
| O5 | 0.0356 (15) | 0.102 (2) | 0.0901 (18) | 0.0029 (14) | −0.0133 (13) | −0.0283 (17) |
| N1 | 0.0269 (11) | 0.0310 (11) | 0.0277 (9) | 0.0003 (10) | 0.0016 (9) | −0.0025 (8) |
| N2 | 0.0260 (11) | 0.0307 (11) | 0.0269 (9) | 0.0038 (9) | −0.0002 (8) | −0.0031 (8) |
| N3 | 0.0242 (10) | 0.0296 (10) | 0.0275 (8) | −0.0036 (8) | −0.0028 (9) | −0.0012 (9) |
| N4 | 0.0409 (14) | 0.0495 (16) | 0.0378 (10) | −0.0041 (11) | −0.0161 (11) | −0.0046 (12) |
| N5 | 0.0369 (15) | 0.0375 (14) | 0.0508 (13) | 0.0048 (11) | −0.0053 (11) | −0.0062 (12) |
| C1 | 0.0282 (13) | 0.0250 (13) | 0.0288 (10) | −0.0015 (10) | 0.0020 (10) | 0.0035 (10) |
| C2 | 0.0265 (11) | 0.0248 (12) | 0.0272 (10) | −0.0010 (9) | −0.0026 (10) | 0.0020 (10) |
| C3 | 0.0265 (14) | 0.0394 (15) | 0.0336 (11) | −0.0004 (11) | 0.0022 (10) | 0.0016 (11) |
| C4 | 0.0406 (18) | 0.0481 (19) | 0.0515 (16) | 0.0162 (15) | 0.0033 (14) | 0.0044 (15) |
| C5 | 0.0278 (13) | 0.0339 (14) | 0.0281 (10) | 0.0028 (11) | −0.0015 (10) | −0.0028 (10) |
| C6 | 0.0423 (18) | 0.0410 (18) | 0.0546 (17) | −0.0048 (15) | 0.0031 (15) | −0.0171 (14) |
| Zn1—N1 | 2.0239 (19) | N3—N4 | 1.410 (3) |
| Zn1—N1i | 2.0239 (19) | N4—H4B | 0.8900 |
| Zn1—O3 | 2.071 (2) | N4—H4C | 0.8900 |
| Zn1—O3i | 2.071 (2) | C1—C3 | 1.492 (4) |
| O1—C3 | 1.426 (3) | C2—C5 | 1.496 (4) |
| O1—H1 | 0.8200 | C3—C4 | 1.525 (4) |
| O2—C5 | 1.412 (3) | C3—H3 | 0.9800 |
| O2—H2 | 0.8200 | C4—H4D | 0.9600 |
| O3—N5 | 1.265 (3) | C4—H4E | 0.9600 |
| O4—N5 | 1.212 (4) | C4—H4F | 0.9600 |
| O5—N5 | 1.215 (4) | C5—C6 | 1.514 (4) |
| N1—C1 | 1.305 (3) | C5—H5 | 0.9800 |
| N1—N2 | 1.397 (3) | C6—H6A | 0.9600 |
| N2—C2 | 1.318 (3) | C6—H6B | 0.9600 |
| N3—C1 | 1.352 (3) | C6—H6C | 0.9600 |
| N3—C2 | 1.366 (3) | ||
| N1—Zn1—N1i | 143.46 (13) | N2—C2—C5 | 125.9 (2) |
| N1—Zn1—O3 | 95.90 (8) | N3—C2—C5 | 124.6 (2) |
| N1i—Zn1—O3 | 104.96 (8) | O1—C3—C1 | 107.4 (2) |
| N1—Zn1—O3i | 104.96 (8) | O1—C3—C4 | 108.4 (2) |
| N1i—Zn1—O3i | 95.90 (8) | C1—C3—C4 | 110.4 (2) |
| O3—Zn1—O3i | 109.73 (13) | O1—C3—H3 | 110.2 |
| C3—O1—H1 | 109.5 | C1—C3—H3 | 110.2 |
| C5—O2—H2 | 109.5 | C4—C3—H3 | 110.2 |
| N5—O3—Zn1 | 114.52 (17) | C3—C4—H4D | 109.5 |
| C1—N1—N2 | 108.94 (19) | C3—C4—H4E | 109.5 |
| C1—N1—Zn1 | 122.26 (18) | H4D—C4—H4E | 109.5 |
| N2—N1—Zn1 | 128.68 (16) | C3—C4—H4F | 109.5 |
| C2—N2—N1 | 106.0 (2) | H4D—C4—H4F | 109.5 |
| C1—N3—C2 | 107.0 (2) | H4E—C4—H4F | 109.5 |
| C1—N3—N4 | 126.3 (2) | O2—C5—C2 | 110.2 (2) |
| C2—N3—N4 | 126.6 (2) | O2—C5—C6 | 107.8 (2) |
| N3—N4—H4B | 109.2 | C2—C5—C6 | 113.0 (2) |
| N3—N4—H4C | 109.2 | O2—C5—H5 | 108.6 |
| H4B—N4—H4C | 109.5 | C2—C5—H5 | 108.6 |
| O4—N5—O5 | 120.9 (3) | C6—C5—H5 | 108.6 |
| O4—N5—O3 | 118.2 (3) | C5—C6—H6A | 109.5 |
| O5—N5—O3 | 120.8 (3) | C5—C6—H6B | 109.5 |
| N1—C1—N3 | 108.6 (2) | H6A—C6—H6B | 109.5 |
| N1—C1—C3 | 124.7 (2) | C5—C6—H6C | 109.5 |
| N3—C1—C3 | 126.6 (2) | H6A—C6—H6C | 109.5 |
| N2—C2—N3 | 109.4 (2) | H6B—C6—H6C | 109.5 |
| H··· | ||||
| O1—H1···O2ii | 0.82 | 2.07 | 2.867 (3) | 163 |
| N4—H4B···O5ii | 0.89 | 2.51 | 3.142 (5) | 129 |
| O2—H2···N2iii | 0.82 | 2.13 | 2.943 (3) | 174 |
| N4—H4C···O4iv | 0.89 | 2.40 | 3.022 (4) | 127 |
Selected geometric parameters (Å, °)
| Zn1—N1 | 2.0239 (19) |
| Zn1—O3 | 2.071 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O2ii | 0.82 | 2.07 | 2.867 (3) | 163 |
| N4—H4 | 0.89 | 2.51 | 3.142 (5) | 129 |
| O2—H2⋯N2iii | 0.82 | 2.13 | 2.943 (3) | 174 |
| N4—H4 | 0.89 | 2.40 | 3.022 (4) | 127 |
Symmetry codes: (ii) ; (iii) ; (iv) .