Literature DB >> 22346820

Oxymatrinium tetra-chloridoferrate(III).

Xiong He1, Xing Chuan Wei, Yu Chang Tian, Jia Xiong Lai.   

Abstract

The asymmetric unit of the title compound, (C(15)H(25)N(2)O(2))[FeCl(4)], contains a tetra-chloridoferrate(III) anion and a oxymatrinium cation [oxymatrine is (4R,7aS,13aR,13bR,13cS)-dodeca-hydro-1H,5H,10H-dipyrido[2,1-f:3',2',1'-ij][1,6]naphthyridin-10-one 4-oxide]. The conformation of oxymatrine is similar to that of matrine with one ring having a half-chair conformation, while the others have chair conformations. Chiral chains of cations along the c axis are formed by O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346820      PMCID: PMC3274873          DOI: 10.1107/S1600536812000281

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chen et al. (2011 ▶); Jin et al. (2005 ▶, 2009 ▶); Zhang et al. (2003 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the biological activity of oxymatrine, see: Song et al. (2006 ▶); Wang et al. (2005 ▶); Xiang et al. (2002 ▶); Zhang et al. (2001 ▶, 2009 ▶); Sun et al. (2008 ▶). Oxymatrine is an alkaloid extracted from the Chinese herb Sophora alopecuraides L, see: Lai et al. (2003 ▶). For the preparation and studies of related salts, see: Mao et al. (2008 ▶); Li (2006 ▶).

Experimental

Crystal data

(C15H25N2O2)[FeCl4] M = 463.02 Orthorhombic, a = 7.7919 (4) Å b = 11.9518 (6) Å c = 21.1315 (10) Å V = 1967.92 (17) Å3 Z = 4 Mo Kα radiation μ = 1.32 mm−1 T = 173 K 0.45 × 0.26 × 0.25 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.588, T max = 0.734 9963 measured reflections 4267 independent reflections 3812 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.061 S = 1.03 4267 reflections 218 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶), 1787 Friedel pairs Flack parameter: 0.006 (14) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008) ▶; program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000281/mw2043sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000281/mw2043Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C15H25N2O2)[FeCl4]F(000) = 956
Mr = 463.02Dx = 1.563 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6437 reflections
a = 7.7919 (4) Åθ = 2.6–27.1°
b = 11.9518 (6) ŵ = 1.32 mm1
c = 21.1315 (10) ÅT = 173 K
V = 1967.92 (17) Å3Prism, yellow
Z = 40.45 × 0.26 × 0.25 mm
Bruker SMART 1000 CCD diffractometer4267 independent reflections
Radiation source: fine-focus sealed tube3812 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 27.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.588, Tmax = 0.734k = −7→15
9963 measured reflectionsl = −23→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.061w = 1/[σ2(Fo2) + (0.0334P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
4267 reflectionsΔρmax = 0.31 e Å3
218 parametersΔρmin = −0.28 e Å3
0 restraintsAbsolute structure: Flack (1983), 1787 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.006 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.48378 (4)0.01347 (2)0.169548 (12)0.02484 (8)
Cl10.48652 (8)−0.12257 (4)0.23956 (2)0.03028 (12)
Cl20.72310 (9)0.10944 (6)0.17647 (3)0.04546 (17)
Cl30.25496 (9)0.11672 (6)0.18583 (3)0.04688 (18)
Cl40.46744 (8)−0.05810 (5)0.07447 (2)0.03739 (14)
N11.1039 (2)0.60782 (15)0.13234 (8)0.0221 (4)
C21.1716 (3)0.72196 (19)0.14985 (10)0.0276 (5)
H2A1.28980.73050.13340.033*
H2B1.17590.72900.19650.033*
C31.0591 (3)0.81319 (19)0.12295 (11)0.0298 (5)
H3A1.06150.80940.07620.036*
H3B1.10480.88700.13580.036*
C40.8751 (3)0.8018 (2)0.14585 (11)0.0325 (5)
H4A0.80300.85760.12370.039*
H4B0.87080.81890.19170.039*
C50.8001 (3)0.68571 (19)0.13492 (10)0.0259 (5)
H50.69640.68060.16270.031*
C60.9204 (3)0.59318 (19)0.15665 (9)0.0248 (5)
H60.92710.59960.20380.030*
C70.8473 (3)0.47659 (19)0.14298 (10)0.0272 (5)
H70.74080.47030.16920.033*
C80.9697 (3)0.38652 (19)0.16806 (11)0.0381 (5)
H8A0.97180.38960.21490.046*
H8B0.92670.31180.15550.046*
C91.1505 (3)0.40203 (19)0.14288 (12)0.0366 (6)
H9A1.22690.34460.16150.044*
H9B1.15060.39210.09640.044*
C101.2176 (3)0.51723 (19)0.15907 (10)0.0298 (5)
H10A1.22390.52530.20560.036*
H10B1.33510.52580.14190.036*
C110.7893 (3)0.46034 (17)0.07363 (9)0.0235 (4)
H110.89230.46420.04550.028*
C120.7037 (3)0.34673 (18)0.06509 (11)0.0328 (5)
H12A0.79160.28700.06630.039*
H12B0.62160.33350.10000.039*
C130.6095 (3)0.3433 (2)0.00198 (12)0.0369 (6)
H13A0.68970.3611−0.03290.044*
H13B0.56200.2675−0.00540.044*
C140.4664 (3)0.4280 (2)0.00382 (12)0.0402 (6)
H14A0.42370.4395−0.03980.048*
H14B0.37060.39680.02910.048*
C150.5150 (3)0.53988 (18)0.03113 (9)0.0267 (4)
N160.6714 (2)0.55307 (14)0.05703 (8)0.0213 (4)
C170.7358 (3)0.66798 (17)0.06706 (10)0.0232 (4)
H17A0.64270.72200.05800.028*
H17B0.83080.68290.03710.028*
O10.41292 (18)0.62004 (14)0.02719 (7)0.0319 (4)
O21.09826 (17)0.59837 (13)0.06528 (6)0.0218 (3)
H21.19630.61090.05030.033*
U11U22U33U12U13U23
Fe10.03331 (16)0.02190 (14)0.01931 (13)−0.00039 (14)0.00051 (12)−0.00073 (11)
Cl10.0359 (3)0.0272 (2)0.0277 (2)−0.0024 (3)−0.0005 (2)0.00547 (19)
Cl20.0571 (4)0.0398 (4)0.0395 (3)−0.0238 (3)−0.0061 (3)0.0081 (3)
Cl30.0607 (4)0.0372 (4)0.0427 (4)0.0213 (3)0.0135 (3)0.0028 (3)
Cl40.0444 (3)0.0461 (3)0.0216 (2)0.0090 (3)−0.0043 (2)−0.0082 (2)
N10.0239 (8)0.0255 (9)0.0169 (8)−0.0008 (8)−0.0052 (7)−0.0010 (8)
C20.0260 (11)0.0290 (12)0.0277 (11)−0.0047 (9)−0.0072 (9)−0.0038 (10)
C30.0318 (12)0.0205 (10)0.0372 (12)−0.0016 (9)−0.0087 (9)−0.0025 (9)
C40.0284 (11)0.0307 (13)0.0383 (13)0.0028 (10)−0.0043 (10)−0.0100 (11)
C50.0211 (10)0.0325 (13)0.0240 (11)0.0007 (9)0.0035 (8)−0.0054 (9)
C60.0249 (10)0.0335 (12)0.0160 (10)−0.0037 (9)0.0030 (8)−0.0001 (9)
C70.0281 (10)0.0297 (12)0.0237 (10)−0.0040 (10)0.0018 (8)0.0046 (10)
C80.0486 (14)0.0297 (11)0.0359 (12)−0.0076 (11)−0.0129 (12)0.0132 (10)
C90.0415 (13)0.0247 (12)0.0436 (14)0.0044 (10)−0.0142 (11)0.0045 (11)
C100.0322 (11)0.0299 (12)0.0272 (11)0.0048 (10)−0.0105 (9)0.0030 (10)
C110.0203 (9)0.0239 (11)0.0265 (11)−0.0011 (8)0.0002 (8)0.0028 (9)
C120.0337 (12)0.0228 (11)0.0419 (13)−0.0032 (10)−0.0013 (10)0.0007 (10)
C130.0362 (13)0.0304 (13)0.0441 (14)−0.0097 (11)0.0005 (11)−0.0084 (11)
C140.0318 (13)0.0401 (13)0.0487 (14)−0.0093 (12)−0.0080 (11)−0.0059 (11)
C150.0210 (10)0.0336 (11)0.0257 (10)−0.0028 (10)0.0029 (9)0.0030 (8)
N160.0190 (8)0.0225 (9)0.0226 (9)−0.0022 (7)0.0014 (6)0.0005 (7)
C170.0204 (10)0.0214 (10)0.0278 (10)0.0004 (8)−0.0010 (9)−0.0013 (9)
O10.0194 (7)0.0359 (9)0.0404 (9)−0.0004 (7)−0.0015 (6)0.0040 (8)
O20.0190 (7)0.0307 (8)0.0157 (6)−0.0011 (6)0.0001 (5)−0.0008 (6)
Fe1—Cl42.1874 (6)C8—H8A0.9900
Fe1—Cl22.1942 (7)C8—H8B0.9900
Fe1—Cl32.1954 (7)C9—C101.512 (3)
Fe1—Cl12.1984 (5)C9—H9A0.9900
N1—O21.422 (2)C9—H9B0.9900
N1—C21.509 (3)C10—H10A0.9900
N1—C101.509 (3)C10—H10B0.9900
N1—C61.529 (3)C11—N161.482 (3)
C2—C31.510 (3)C11—C121.523 (3)
C2—H2A0.9900C11—H111.0000
C2—H2B0.9900C12—C131.523 (3)
C3—C41.520 (3)C12—H12A0.9900
C3—H3A0.9900C12—H12B0.9900
C3—H3B0.9900C13—C141.507 (3)
C4—C51.523 (3)C13—H13A0.9900
C4—H4A0.9900C13—H13B0.9900
C4—H4B0.9900C14—C151.505 (3)
C5—C61.521 (3)C14—H14A0.9900
C5—C171.534 (3)C14—H14B0.9900
C5—H51.0000C15—O11.248 (3)
C6—C71.533 (3)C15—N161.345 (3)
C6—H61.0000N16—C171.478 (3)
C7—C81.533 (3)C17—H17A0.9900
C7—C111.546 (3)C17—H17B0.9900
C7—H71.0000O2—H20.8400
C8—C91.518 (4)
Cl4—Fe1—Cl2108.37 (3)C7—C8—H8B109.3
Cl4—Fe1—Cl3108.45 (3)H8A—C8—H8B107.9
Cl2—Fe1—Cl3112.70 (3)C10—C9—C8110.7 (2)
Cl4—Fe1—Cl1109.23 (2)C10—C9—H9A109.5
Cl2—Fe1—Cl1109.48 (3)C8—C9—H9A109.5
Cl3—Fe1—Cl1108.55 (3)C10—C9—H9B109.5
O2—N1—C2109.09 (15)C8—C9—H9B109.5
O2—N1—C10109.52 (15)H9A—C9—H9B108.1
C2—N1—C10110.59 (15)N1—C10—C9111.44 (17)
O2—N1—C6107.26 (14)N1—C10—H10A109.3
C2—N1—C6110.36 (17)C9—C10—H10A109.3
C10—N1—C6109.95 (16)N1—C10—H10B109.3
N1—C2—C3110.95 (16)C9—C10—H10B109.3
N1—C2—H2A109.4H10A—C10—H10B108.0
C3—C2—H2A109.4N16—C11—C12111.55 (17)
N1—C2—H2B109.4N16—C11—C7108.17 (16)
C3—C2—H2B109.4C12—C11—C7110.63 (18)
H2A—C2—H2B108.0N16—C11—H11108.8
C2—C3—C4111.3 (2)C12—C11—H11108.8
C2—C3—H3A109.4C7—C11—H11108.8
C4—C3—H3A109.4C13—C12—C11109.82 (18)
C2—C3—H3B109.4C13—C12—H12A109.7
C4—C3—H3B109.4C11—C12—H12A109.7
H3A—C3—H3B108.0C13—C12—H12B109.7
C3—C4—C5113.30 (19)C11—C12—H12B109.7
C3—C4—H4A108.9H12A—C12—H12B108.2
C5—C4—H4A108.9C14—C13—C12108.42 (19)
C3—C4—H4B108.9C14—C13—H13A110.0
C5—C4—H4B108.9C12—C13—H13A110.0
H4A—C4—H4B107.7C14—C13—H13B110.0
C6—C5—C4112.33 (17)C12—C13—H13B110.0
C6—C5—C17112.53 (17)H13A—C13—H13B108.4
C4—C5—C17113.14 (19)C15—C14—C13114.89 (19)
C6—C5—H5106.0C15—C14—H14A108.5
C4—C5—H5106.0C13—C14—H14A108.5
C17—C5—H5106.0C15—C14—H14B108.5
C5—C6—N1113.07 (17)C13—C14—H14B108.5
C5—C6—C7112.02 (17)H14A—C14—H14B107.5
N1—C6—C7112.84 (18)O1—C15—N16120.96 (19)
C5—C6—H6106.1O1—C15—C14119.75 (19)
N1—C6—H6106.1N16—C15—C14119.22 (19)
C7—C6—H6106.1C15—N16—C17118.37 (17)
C8—C7—C6110.00 (17)C15—N16—C11124.78 (17)
C8—C7—C11114.93 (19)C17—N16—C11116.77 (15)
C6—C7—C11113.68 (17)N16—C17—C5111.93 (17)
C8—C7—H7105.8N16—C17—H17A109.2
C6—C7—H7105.8C5—C17—H17A109.2
C11—C7—H7105.8N16—C17—H17B109.2
C9—C8—C7111.76 (18)C5—C17—H17B109.2
C9—C8—H8A109.3H17A—C17—H17B107.9
C7—C8—H8A109.3N1—O2—H2109.5
C9—C8—H8B109.3
O2—N1—C2—C359.1 (2)C2—N1—C10—C9179.15 (19)
C10—N1—C2—C3179.66 (18)C6—N1—C10—C957.0 (2)
C6—N1—C2—C3−58.5 (2)C8—C9—C10—N1−58.5 (2)
N1—C2—C3—C457.9 (2)C8—C7—C11—N16179.53 (16)
C2—C3—C4—C5−52.4 (3)C6—C7—C11—N16−52.5 (2)
C3—C4—C5—C647.8 (2)C8—C7—C11—C1257.1 (2)
C3—C4—C5—C17−81.0 (2)C6—C7—C11—C12−174.92 (18)
C4—C5—C6—N1−48.8 (2)N16—C11—C12—C1345.7 (2)
C17—C5—C6—N180.3 (2)C7—C11—C12—C13166.21 (18)
C4—C5—C6—C7−177.63 (17)C11—C12—C13—C14−64.4 (2)
C17—C5—C6—C7−48.6 (2)C12—C13—C14—C1544.5 (3)
O2—N1—C6—C5−64.5 (2)C13—C14—C15—O1170.62 (19)
C2—N1—C6—C554.2 (2)C13—C14—C15—N16−6.5 (3)
C10—N1—C6—C5176.50 (16)O1—C15—N16—C17−14.0 (3)
O2—N1—C6—C763.9 (2)C14—C15—N16—C17163.0 (2)
C2—N1—C6—C7−177.34 (16)O1—C15—N16—C11169.15 (18)
C10—N1—C6—C7−55.1 (2)C14—C15—N16—C11−13.8 (3)
C5—C6—C7—C8−177.77 (18)C12—C11—N16—C15−6.8 (3)
N1—C6—C7—C853.3 (2)C7—C11—N16—C15−128.66 (19)
C5—C6—C7—C1151.7 (2)C12—C11—N16—C17176.39 (17)
N1—C6—C7—C11−77.2 (2)C7—C11—N16—C1754.5 (2)
C6—C7—C8—C9−53.7 (2)C15—N16—C17—C5129.11 (19)
C11—C7—C8—C976.1 (2)C11—N16—C17—C5−53.8 (2)
C7—C8—C9—C1056.7 (2)C6—C5—C17—N1648.7 (2)
O2—N1—C10—C9−60.6 (2)C4—C5—C17—N16177.31 (17)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.841.762.5935 (19)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.841.762.5935 (19)171

Symmetry code: (i) .

  9 in total

1.  Effects of Matrine on proliferation and differentiation in K-562 cells.

Authors:  L P Zhang; J K Jiang; J W Tam; Y Zhang; X S Liu; X R Xu; B Z Liu; Y J He
Journal:  Leuk Res       Date:  2001-09       Impact factor: 3.156

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Potential new inorganic antitumour agents from combining the anticancer traditional Chinese medicine (TCM) matrine with Ga(III), Au(III), Sn(IV) ions, and DNA binding studies.

Authors:  Zhen-Feng Chen; Li Mao; Li-Min Liu; Yan-Cheng Liu; Yan Peng; Xue Hong; Hong-Hong Wang; Hua-Gang Liu; Hong Liang
Journal:  J Inorg Biochem       Date:  2010-10-14       Impact factor: 4.155

4.  Simultaneous determination of oxymatrine and its active metabolite matrine in dog plasma by liquid chromatography-mass spectrometry and its application to pharmacokinetic studies.

Authors:  Sujun Wang; Guangji Wang; Xiaotian Li; Jianguo Sun; Renling Ma; Longsheng Sheng
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2005-03-25       Impact factor: 3.205

5.  Effects of oxymatrine on proliferation and apoptosis in human hepatoma cells.

Authors:  Guanbin Song; Qing Luo; Jian Qin; Lu Wang; Yisong Shi; Caixin Sun
Journal:  Colloids Surf B Biointerfaces       Date:  2006-02-03       Impact factor: 5.268

6.  Cardioprotective effects and underlying mechanisms of oxymatrine against Ischemic myocardial injuries of rats.

Authors:  Sun Hong-Li; Li Lei; Shang Lei; Zhao Dan; Dong De-Li; Qiao Guo-Fen; Liu Yan; Chu Wen-Feng; Yang Bao-Feng
Journal:  Phytother Res       Date:  2008-07       Impact factor: 5.878

7.  Effect of oxymatrine on murine fulminant hepatitis and hepatocyte apoptosis.

Authors:  Xiaoxing Xiang; Guojun Wang; Xiong Cai; Yuli Li
Journal:  Chin Med J (Engl)       Date:  2002-04       Impact factor: 2.628

8.  Effects of matrine against the growth of human lung cancer and hepatoma cells as well as lung cancer cell migration.

Authors:  Ying Zhang; Hui Zhang; Pengfei Yu; Qian Liu; Kun Liu; Huiying Duan; Ginling Luan; Kazumi Yagasaki; Guoying Zhang
Journal:  Cytotechnology       Date:  2009-08-02       Impact factor: 2.058

9.  Preparative separation and determination of matrine from the Chinese medicinal plant Sophora flavescens Ait by molecularly imprinted solid-phase extraction.

Authors:  Jia-Ping Lai; Xi-Wen He; Yue Jiang; Feng Chen
Journal:  Anal Bioanal Chem       Date:  2002-12-19       Impact factor: 4.142

  9 in total

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