Literature DB >> 22346817

{(E)-4-Hy-droxy-N'-[phen-yl(pyridin-2-yl-κN)methyl-idene]benzohydrazide-κN',O}bis-(nitrato-κO,O')copper(II).

Rahman Bikas, Farhad Sattari, Behrouz Notash.   

Abstract

In the title compound, [Cu(NO(3))(2)(C(19)H(15)N(3)O(2))], the coordination geometry around the Cu(II) ion can be described as distorted square-pyramidal, with two N atoms and one O atom from an (E)-4-hy-droxy-N'-[phen-yl(pyridin-2-yl)methyl-ene]benzohydrazide ligand and one nitrate O atom in the basal plane and one nitrate O atom at the apical site. The other two nitrate O atoms also bind to the Cu atom with long Cu-O distances [2.607 (4) and 2.853 (5) Å]. The crystal packing is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346817      PMCID: PMC3274870          DOI: 10.1107/S1600536811055772

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to aroylhydrazones, see: Craliz et al. (1955 ▶). For pharmacological and catalytic applications of aroylhydrazones, see: Hosseini Monfared et al. (2010 ▶). For related structures, see: Huo et al. (2004 ▶); Kong et al. (2009 ▶); Mohd Lair et al. (2010 ▶); Shit et al. (2009 ▶); Yin (2008 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

[Cu(NO3)2(C19H15N3O2)] M = 504.91 Triclinic, a = 9.881 (2) Å b = 10.373 (2) Å c = 11.964 (2) Å α = 102.51 (3)° β = 105.07 (3)° γ = 111.16 (3)° V = 1036.6 (6) Å3 Z = 2 Mo Kα radiation μ = 1.11 mm−1 T = 298 K 0.30 × 0.15 × 0.10 mm

Data collection

Stoe IPDS 2T diffractometer Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005 ▶) T min = 0.731, T max = 0.897 11512 measured reflections 5533 independent reflections 4123 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.197 S = 1.13 5533 reflections 303 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.84 e Å−3 Δρmin = −0.64 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811055772/hy2498sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055772/hy2498Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NO3)2(C19H15N3O2)]Z = 2
Mr = 504.91F(000) = 514
Triclinic, P1Dx = 1.618 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.881 (2) ÅCell parameters from 5533 reflections
b = 10.373 (2) Åθ = 1.9–29.2°
c = 11.964 (2) ŵ = 1.11 mm1
α = 102.51 (3)°T = 298 K
β = 105.07 (3)°Needle, green
γ = 111.16 (3)°0.30 × 0.15 × 0.10 mm
V = 1036.6 (6) Å3
Stoe IPDS 2T diffractometer5533 independent reflections
Radiation source: fine-focus sealed tube4123 reflections with I > 2σ(I)
graphiteRint = 0.099
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 1.9°
rotation method scansh = −13→13
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005)k = −13→14
Tmin = 0.731, Tmax = 0.897l = −16→16
11512 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.197H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.1213P)2] where P = (Fo2 + 2Fc2)/3
5533 reflections(Δ/σ)max < 0.001
303 parametersΔρmax = 0.84 e Å3
1 restraintΔρmin = −0.64 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.70675 (5)−0.09738 (4)0.74518 (4)0.03884 (16)
O10.7184 (4)−0.2036 (3)0.5904 (2)0.0440 (6)
O20.6844 (5)−0.4026 (4)0.0445 (3)0.0650 (9)
H2A0.7540−0.35200.02560.098*
O30.4467 (4)−0.2228 (3)0.6994 (3)0.0566 (7)
O40.2388 (4)−0.1955 (4)0.6201 (4)0.0750 (10)
O50.4417 (5)−0.0900 (5)0.5848 (4)0.0811 (12)
O60.7259 (3)−0.2248 (3)0.8443 (3)0.0461 (6)
O70.9656 (4)−0.1034 (4)0.8623 (3)0.0595 (8)
O80.9127 (4)−0.2510 (4)0.9654 (3)0.0644 (9)
N10.7192 (4)0.0659 (3)0.8753 (3)0.0409 (6)
N20.7711 (3)0.0601 (3)0.6788 (2)0.0356 (5)
N30.7779 (4)0.0173 (3)0.5644 (3)0.0400 (6)
N40.3756 (4)−0.1701 (3)0.6356 (3)0.0455 (7)
N50.8729 (4)−0.1919 (4)0.8921 (3)0.0430 (6)
C10.6978 (5)0.0614 (5)0.9806 (4)0.0528 (9)
H10.6719−0.02670.99630.063*
C20.7131 (7)0.1835 (6)1.0667 (4)0.0654 (12)
H20.69840.17831.13960.078*
C30.7503 (7)0.3120 (6)1.0427 (5)0.0703 (14)
H30.75740.39451.09820.084*
C40.7777 (6)0.3203 (5)0.9357 (4)0.0529 (9)
H40.80720.40850.92020.063*
C50.7601 (4)0.1944 (4)0.8529 (3)0.0389 (7)
C60.7855 (4)0.1873 (4)0.7353 (3)0.0365 (6)
C70.8239 (4)0.3152 (3)0.6936 (3)0.0371 (6)
C80.7251 (5)0.3824 (4)0.6785 (4)0.0507 (9)
H80.63210.34490.69170.061*
C90.7662 (6)0.5059 (5)0.6437 (5)0.0605 (11)
H90.69870.54930.63130.073*
C100.9046 (6)0.5646 (5)0.6275 (4)0.0602 (11)
H100.93190.64920.60660.072*
C111.0036 (6)0.4994 (5)0.6419 (4)0.0571 (10)
H111.09770.53940.63080.068*
C120.9617 (5)0.3721 (4)0.6734 (4)0.0480 (8)
H121.02670.32570.68090.058*
C130.7418 (4)−0.1287 (4)0.5217 (3)0.0378 (7)
C140.7340 (4)−0.1929 (4)0.3982 (3)0.0372 (6)
C150.7989 (5)−0.1090 (4)0.3319 (4)0.0463 (8)
H150.8528−0.00700.36810.056*
C160.7840 (5)−0.1755 (4)0.2136 (4)0.0464 (8)
H160.8290−0.11880.17080.056*
C170.7007 (5)−0.3293 (4)0.1578 (3)0.0449 (8)
C180.6355 (5)−0.4144 (4)0.2234 (4)0.0474 (8)
H180.5798−0.51620.18670.057*
C190.6544 (4)−0.3464 (4)0.3427 (3)0.0420 (7)
H190.6136−0.40320.38690.050*
H3A0.762 (5)0.060 (4)0.510 (3)0.042 (11)*
U11U22U33U12U13U23
Cu10.0537 (3)0.0329 (2)0.0368 (2)0.02255 (18)0.01981 (19)0.01504 (16)
O10.0690 (16)0.0362 (11)0.0377 (12)0.0304 (12)0.0234 (12)0.0157 (10)
O20.089 (2)0.0500 (16)0.0504 (16)0.0209 (16)0.0403 (17)0.0075 (13)
O30.0596 (17)0.0522 (16)0.0630 (18)0.0276 (14)0.0200 (14)0.0273 (14)
O40.0497 (18)0.068 (2)0.096 (3)0.0300 (16)0.0149 (18)0.015 (2)
O50.069 (2)0.079 (2)0.095 (3)0.0210 (19)0.022 (2)0.058 (2)
O60.0507 (14)0.0443 (13)0.0531 (15)0.0243 (11)0.0212 (12)0.0265 (12)
O70.0511 (16)0.0687 (19)0.0625 (19)0.0213 (14)0.0227 (14)0.0366 (16)
O80.073 (2)0.082 (2)0.066 (2)0.0469 (19)0.0297 (17)0.0495 (19)
N10.0471 (16)0.0399 (14)0.0382 (14)0.0211 (12)0.0179 (12)0.0125 (12)
N20.0459 (15)0.0335 (12)0.0286 (12)0.0212 (11)0.0110 (11)0.0098 (10)
N30.0608 (18)0.0340 (13)0.0350 (14)0.0275 (13)0.0211 (13)0.0146 (11)
N40.0447 (16)0.0369 (14)0.0431 (16)0.0158 (12)0.0061 (13)0.0085 (12)
N50.0487 (16)0.0496 (16)0.0352 (14)0.0258 (14)0.0135 (12)0.0182 (13)
C10.065 (3)0.059 (2)0.043 (2)0.030 (2)0.0250 (19)0.0219 (18)
C20.090 (3)0.078 (3)0.047 (2)0.048 (3)0.038 (2)0.023 (2)
C30.105 (4)0.061 (3)0.055 (3)0.046 (3)0.039 (3)0.009 (2)
C40.070 (3)0.046 (2)0.0421 (19)0.0315 (19)0.0173 (18)0.0065 (15)
C50.0451 (17)0.0410 (16)0.0310 (15)0.0231 (14)0.0115 (13)0.0093 (12)
C60.0421 (17)0.0336 (14)0.0368 (15)0.0208 (13)0.0139 (13)0.0114 (12)
C70.0438 (17)0.0306 (14)0.0346 (15)0.0192 (13)0.0098 (13)0.0079 (11)
C80.055 (2)0.0444 (19)0.064 (2)0.0316 (17)0.0240 (19)0.0214 (18)
C90.082 (3)0.049 (2)0.067 (3)0.043 (2)0.026 (2)0.026 (2)
C100.087 (3)0.0409 (19)0.053 (2)0.026 (2)0.025 (2)0.0228 (17)
C110.061 (2)0.053 (2)0.054 (2)0.0182 (19)0.024 (2)0.0221 (19)
C120.054 (2)0.0459 (18)0.052 (2)0.0259 (16)0.0228 (17)0.0208 (16)
C130.0446 (17)0.0338 (15)0.0416 (17)0.0217 (13)0.0195 (14)0.0132 (13)
C140.0446 (17)0.0371 (15)0.0349 (15)0.0229 (13)0.0159 (13)0.0121 (12)
C150.064 (2)0.0337 (15)0.0471 (19)0.0236 (15)0.0256 (17)0.0154 (14)
C160.060 (2)0.0460 (18)0.0426 (18)0.0264 (17)0.0242 (17)0.0205 (15)
C170.053 (2)0.0437 (18)0.0387 (17)0.0232 (16)0.0193 (15)0.0099 (14)
C180.055 (2)0.0349 (16)0.050 (2)0.0165 (15)0.0273 (17)0.0083 (14)
C190.0496 (19)0.0387 (16)0.0449 (18)0.0213 (15)0.0246 (16)0.0159 (14)
Cu1—N21.944 (3)C4—C51.379 (5)
Cu1—N11.978 (3)C4—H40.9300
Cu1—O61.983 (3)C5—C61.483 (5)
Cu1—O11.993 (2)C6—C71.475 (4)
Cu1—O32.268 (3)C7—C121.383 (5)
O1—C131.256 (4)C7—C81.388 (5)
O2—C171.339 (5)C8—C91.386 (6)
O2—H2A0.8200C8—H80.9300
O3—N41.247 (4)C9—C101.367 (7)
O4—N41.233 (5)C9—H90.9300
O5—N41.232 (5)C10—C111.373 (7)
O6—N51.295 (4)C10—H100.9300
O7—N51.230 (4)C11—C121.399 (6)
O8—N51.237 (4)C11—H110.9300
N1—C11.339 (5)C12—H120.9300
N1—C51.354 (5)C13—C141.454 (5)
N2—C61.282 (4)C14—C191.400 (5)
N2—N31.373 (4)C14—C151.400 (5)
N3—C131.364 (4)C15—C161.377 (5)
N3—H3A0.88 (4)C15—H150.9300
C1—C21.380 (6)C16—C171.405 (5)
C1—H10.9300C16—H160.9300
C2—C31.365 (7)C17—C181.401 (5)
C2—H20.9300C18—C191.378 (5)
C3—C41.389 (6)C18—H180.9300
C3—H30.9300C19—H190.9300
N2—Cu1—N180.16 (12)C4—C5—C6124.1 (3)
N2—Cu1—O6158.77 (13)N2—C6—C7126.2 (3)
N1—Cu1—O697.76 (12)N2—C6—C5111.8 (3)
N2—Cu1—O179.23 (11)C7—C6—C5121.9 (3)
N1—Cu1—O1159.40 (12)C12—C7—C8119.5 (3)
O6—Cu1—O1101.39 (11)C12—C7—C6120.1 (3)
N2—Cu1—O3116.69 (12)C8—C7—C6120.4 (3)
N1—Cu1—O390.60 (13)C9—C8—C7119.5 (4)
O6—Cu1—O384.35 (11)C9—C8—H8120.3
O1—Cu1—O398.75 (13)C7—C8—H8120.3
C13—O1—Cu1113.6 (2)C10—C9—C8120.9 (4)
C17—O2—H2A109.5C10—C9—H9119.6
N4—O3—Cu1109.2 (2)C8—C9—H9119.6
N5—O6—Cu1107.5 (2)C9—C10—C11120.3 (4)
C1—N1—C5119.4 (3)C9—C10—H10119.8
C1—N1—Cu1126.8 (3)C11—C10—H10119.8
C5—N1—Cu1113.7 (2)C10—C11—C12119.5 (4)
C6—N2—N3125.3 (3)C10—C11—H11120.3
C6—N2—Cu1119.5 (2)C12—C11—H11120.3
N3—N2—Cu1114.7 (2)C7—C12—C11120.2 (4)
C13—N3—N2112.3 (3)C7—C12—H12119.9
C13—N3—H3A118 (3)C11—C12—H12119.9
N2—N3—H3A124 (3)O1—C13—N3119.5 (3)
O5—N4—O4117.7 (4)O1—C13—C14121.7 (3)
O5—N4—O3120.0 (4)N3—C13—C14118.9 (3)
O4—N4—O3122.3 (4)C19—C14—C15118.9 (3)
O7—N5—O8123.4 (4)C19—C14—C13117.8 (3)
O7—N5—O6118.4 (3)C15—C14—C13123.3 (3)
O8—N5—O6118.2 (3)C16—C15—C14120.8 (3)
N1—C1—C2122.0 (4)C16—C15—H15119.6
N1—C1—H1119.0C14—C15—H15119.6
C2—C1—H1119.0C15—C16—C17119.8 (3)
C3—C2—C1118.6 (4)C15—C16—H16120.1
C3—C2—H2120.7C17—C16—H16120.1
C1—C2—H2120.7O2—C17—C18116.6 (3)
C2—C3—C4120.3 (4)O2—C17—C16123.4 (3)
C2—C3—H3119.8C18—C17—C16119.9 (3)
C4—C3—H3119.8C19—C18—C17119.6 (3)
C5—C4—C3118.3 (4)C19—C18—H18120.2
C5—C4—H4120.8C17—C18—H18120.2
C3—C4—H4120.8C18—C19—C14120.9 (3)
N1—C5—C4121.3 (3)C18—C19—H19119.5
N1—C5—C6114.6 (3)C14—C19—H19119.5
N2—Cu1—O1—C13−7.4 (3)Cu1—N1—C5—C60.7 (4)
N1—Cu1—O1—C13−7.8 (5)C3—C4—C5—N1−0.9 (7)
O6—Cu1—O1—C13−165.8 (3)C3—C4—C5—C6−180.0 (4)
O3—Cu1—O1—C13108.2 (3)N3—N2—C6—C7−5.0 (6)
N2—Cu1—O3—N4−0.9 (3)Cu1—N2—C6—C7−176.1 (3)
N1—Cu1—O3—N478.4 (3)N3—N2—C6—C5175.6 (3)
O6—Cu1—O3—N4176.1 (3)Cu1—N2—C6—C54.4 (4)
O1—Cu1—O3—N4−83.2 (3)N1—C5—C6—N2−3.2 (5)
N2—Cu1—O6—N5−9.2 (4)C4—C5—C6—N2176.0 (4)
N1—Cu1—O6—N5−92.0 (2)N1—C5—C6—C7177.3 (3)
O1—Cu1—O6—N580.4 (2)C4—C5—C6—C7−3.5 (6)
O3—Cu1—O6—N5178.2 (2)N2—C6—C7—C12−58.8 (5)
N2—Cu1—N1—C1−176.0 (4)C5—C6—C7—C12120.6 (4)
O6—Cu1—N1—C1−17.4 (4)N2—C6—C7—C8123.5 (4)
O1—Cu1—N1—C1−175.6 (4)C5—C6—C7—C8−57.1 (5)
O3—Cu1—N1—C167.0 (4)C12—C7—C8—C9−0.1 (6)
N2—Cu1—N1—C51.2 (3)C6—C7—C8—C9177.6 (4)
O6—Cu1—N1—C5159.8 (3)C7—C8—C9—C10−1.9 (7)
O1—Cu1—N1—C51.6 (5)C8—C9—C10—C111.9 (7)
O3—Cu1—N1—C5−115.9 (3)C9—C10—C11—C120.0 (7)
N1—Cu1—N2—C6−3.3 (3)C8—C7—C12—C112.0 (6)
O6—Cu1—N2—C6−89.4 (4)C6—C7—C12—C11−175.7 (4)
O1—Cu1—N2—C6176.9 (3)C10—C11—C12—C7−2.0 (7)
O3—Cu1—N2—C682.4 (3)Cu1—O1—C13—N39.0 (4)
N1—Cu1—N2—N3−175.4 (3)Cu1—O1—C13—C14−172.0 (3)
O6—Cu1—N2—N398.5 (4)N2—N3—C13—O1−5.0 (5)
O1—Cu1—N2—N34.8 (2)N2—N3—C13—C14176.1 (3)
O3—Cu1—N2—N3−89.7 (3)O1—C13—C14—C1919.3 (5)
C6—N2—N3—C13−173.3 (3)N3—C13—C14—C19−161.8 (3)
Cu1—N2—N3—C13−1.7 (4)O1—C13—C14—C15−162.1 (4)
Cu1—O3—N4—O516.3 (5)N3—C13—C14—C1516.8 (5)
Cu1—O3—N4—O4−164.1 (3)C19—C14—C15—C160.5 (6)
Cu1—O6—N5—O7−5.3 (4)C13—C14—C15—C16−178.0 (4)
Cu1—O6—N5—O8174.7 (3)C14—C15—C16—C171.0 (6)
C5—N1—C1—C21.3 (6)C15—C16—C17—O2−178.2 (4)
Cu1—N1—C1—C2178.4 (4)C15—C16—C17—C18−1.1 (6)
N1—C1—C2—C30.4 (8)O2—C17—C18—C19177.0 (4)
C1—C2—C3—C4−2.4 (9)C16—C17—C18—C19−0.3 (6)
C2—C3—C4—C52.6 (8)C17—C18—C19—C141.8 (6)
C1—N1—C5—C4−1.1 (6)C15—C14—C19—C18−1.9 (6)
Cu1—N1—C5—C4−178.5 (3)C13—C14—C19—C18176.7 (4)
C1—N1—C5—C6178.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O5i0.88 (4)2.20 (5)2.866 (6)132 (4)
N3—H3A···O4i0.88 (4)2.31 (4)3.180 (5)171 (3)
O2—H2A···O8ii0.821.952.766 (5)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O5i0.88 (4)2.20 (5)2.866 (6)132 (4)
N3—H3A⋯O4i0.88 (4)2.31 (4)3.180 (5)171 (3)
O2—H2A⋯O8ii0.821.952.766 (5)174

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dibromido{2-hydr-oxy-N'-[phen-yl(2-pyrid-yl)methyl-ene]benzohydrazide}copper(II).

Authors:  Ling-Qian Kong; Xiu-Ping Ju; Da-Cheng Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

3.  Bis[μ-4-hydr-oxy-N'-(4-meth-oxy-2-oxido-benzyl-idene)benzohydrazidato]bis-[pyridine-copper(II)].

Authors:  Nooraziah Mohd Lair; Hamid Khaledi; Hapipah Mohd Ali; Rustam Puteh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

4.  The new three-dimensional supramolecule bis{mu-2-[(4-hydroxybenzoyl)hydrazonomethyl]phenolato}bis[aquacopper(II)] dinitrate.

Authors:  Hua Yin
Journal:  Acta Crystallogr C       Date:  2008-09-20       Impact factor: 1.172

  4 in total

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