Literature DB >> 22346796

trans-Diiodidobis(2-phenyl-pyridine-κN)palladium(II).

Kwang Ha1.   

Abstract

In the title complex, [PdI(2)(C(11)H(9)N)(2)], the Pd(II) ion has a distorted trans-I(2)N(2) square-planar coordination geometry defined by two N atoms from two 2-phenyl-pyridine ligands and two I(-) anions. The 2-phenyl-pyridine ligands are not planar, the dihedral angles between the pyridine and benzene rings being 50.1 (2) and 45.7 (2)°. An inter-molecular π-π inter-action between the six-membered rings is present, the ring centroid-centroid distance being 3.898 (4) Å.

Entities:  

Year:  2012        PMID: 22346796      PMCID: PMC3274849          DOI: 10.1107/S1600536811055425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, [PdCl2(C11H9N)2], see: Ha (2011 ▶).

Experimental

Crystal data

[PdI2(C11H9N)2] M = 670.58 Monoclinic, a = 9.9163 (10) Å b = 14.4759 (14) Å c = 14.9917 (15) Å β = 103.663 (2)° V = 2091.1 (4) Å3 Z = 4 Mo Kα radiation μ = 3.85 mm−1 T = 200 K 0.25 × 0.23 × 0.11 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.511, T max = 0.655 15087 measured reflections 5163 independent reflections 2650 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 0.98 5163 reflections 244 parameters H-atom parameters constrained Δρmax = 2.20 e Å−3 Δρmin = −1.15 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055425/is5038sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055425/is5038Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdI2(C11H9N)2]F(000) = 1264
Mr = 670.58Dx = 2.130 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3071 reflections
a = 9.9163 (10) Åθ = 2.5–27.7°
b = 14.4759 (14) ŵ = 3.85 mm1
c = 14.9917 (15) ÅT = 200 K
β = 103.663 (2)°Plate, red
V = 2091.1 (4) Å30.25 × 0.23 × 0.11 mm
Z = 4
Bruker SMART 1000 CCD diffractometer5163 independent reflections
Radiation source: fine-focus sealed tube2650 reflections with I > 2σ(I)
graphiteRint = 0.061
φ and ω scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→13
Tmin = 0.511, Tmax = 0.655k = −18→19
15087 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0329P)2] where P = (Fo2 + 2Fc2)/3
5163 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 2.20 e Å3
0 restraintsΔρmin = −1.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.75033 (5)0.14770 (3)0.24074 (3)0.02261 (13)
I10.61261 (5)0.14579 (3)0.36973 (3)0.03177 (14)
I20.88936 (5)0.15018 (3)0.11195 (3)0.03134 (14)
N10.6117 (5)0.0560 (3)0.1689 (3)0.0223 (12)
N20.8874 (6)0.2392 (4)0.3151 (4)0.0294 (14)
C10.6530 (7)−0.0331 (4)0.1743 (4)0.0282 (16)
H10.7465−0.04640.20430.034*
C20.5691 (8)−0.1047 (5)0.1396 (5)0.0365 (19)
H20.6031−0.16630.14520.044*
C30.4332 (8)−0.0863 (5)0.0959 (5)0.0339 (18)
H30.3708−0.13490.07200.041*
C40.3903 (7)0.0041 (5)0.0877 (5)0.0325 (18)
H40.29800.01810.05560.039*
C50.4787 (7)0.0753 (4)0.1254 (4)0.0249 (16)
C60.4288 (7)0.1721 (4)0.1201 (4)0.0252 (16)
C70.3044 (7)0.1915 (5)0.1446 (4)0.0281 (16)
H70.25400.14300.16450.034*
C80.2542 (8)0.2810 (5)0.1401 (5)0.0382 (19)
H80.17100.29400.15870.046*
C90.3244 (8)0.3508 (5)0.1090 (5)0.0354 (18)
H90.28900.41200.10560.043*
C100.4459 (7)0.3331 (5)0.0824 (5)0.0319 (18)
H100.49380.38210.06100.038*
C110.4991 (7)0.2430 (5)0.0868 (4)0.0299 (17)
H110.58180.23030.06740.036*
C120.8459 (8)0.3265 (5)0.3126 (5)0.0348 (19)
H120.75360.34060.28050.042*
C130.9289 (8)0.3975 (5)0.3540 (5)0.043 (2)
H130.89560.45920.34960.052*
C141.0588 (8)0.3775 (5)0.4010 (5)0.040 (2)
H141.11770.42550.43100.048*
C151.1072 (8)0.2880 (5)0.4060 (5)0.042 (2)
H151.19900.27420.43930.051*
C161.0189 (8)0.2168 (5)0.3612 (5)0.0321 (18)
C171.0712 (8)0.1208 (5)0.3653 (5)0.0351 (19)
C181.2040 (8)0.1041 (6)0.3535 (5)0.041 (2)
H181.25840.15400.34020.049*
C191.2577 (8)0.0150 (5)0.3609 (5)0.044 (2)
H191.34740.00410.35080.053*
C201.1810 (9)−0.0581 (6)0.3831 (5)0.049 (2)
H201.2183−0.11890.38930.059*
C211.0499 (8)−0.0414 (5)0.3962 (5)0.044 (2)
H210.9967−0.09090.41160.053*
C220.9956 (8)0.0471 (5)0.3871 (5)0.041 (2)
H220.90500.05760.39580.049*
U11U22U33U12U13U23
Pd10.0173 (3)0.0242 (3)0.0258 (3)−0.0034 (2)0.0040 (2)−0.0018 (2)
I10.0291 (3)0.0354 (3)0.0328 (3)−0.0015 (2)0.0115 (2)−0.0018 (2)
I20.0253 (3)0.0370 (3)0.0331 (3)−0.0029 (2)0.0095 (2)−0.0013 (2)
N10.017 (3)0.027 (3)0.021 (3)−0.005 (2)0.001 (2)0.001 (2)
N20.026 (4)0.031 (3)0.029 (3)−0.011 (3)0.002 (3)−0.001 (3)
C10.029 (4)0.024 (4)0.032 (4)0.002 (3)0.009 (3)−0.003 (3)
C20.045 (5)0.021 (4)0.044 (5)−0.001 (3)0.011 (4)−0.005 (3)
C30.030 (5)0.038 (4)0.032 (4)−0.013 (4)0.003 (3)−0.002 (3)
C40.030 (5)0.041 (5)0.024 (4)0.002 (4)0.001 (3)0.009 (3)
C50.031 (4)0.025 (4)0.016 (3)−0.004 (3)0.002 (3)−0.002 (3)
C60.018 (4)0.030 (4)0.025 (4)0.002 (3)0.001 (3)0.005 (3)
C70.026 (4)0.036 (4)0.026 (4)−0.006 (3)0.014 (3)0.001 (3)
C80.023 (5)0.046 (5)0.046 (5)0.012 (4)0.010 (3)0.003 (4)
C90.037 (5)0.026 (4)0.042 (4)0.003 (4)0.007 (3)0.004 (4)
C100.030 (5)0.034 (4)0.034 (4)−0.005 (3)0.011 (3)−0.001 (3)
C110.020 (4)0.038 (4)0.029 (4)0.003 (3)0.002 (3)0.000 (3)
C120.046 (5)0.024 (4)0.035 (4)−0.003 (3)0.011 (4)−0.002 (3)
C130.044 (6)0.034 (5)0.053 (5)−0.010 (4)0.014 (4)−0.002 (4)
C140.039 (5)0.036 (5)0.043 (5)−0.010 (4)0.005 (4)−0.018 (4)
C150.039 (5)0.050 (5)0.034 (4)−0.012 (4)−0.001 (4)−0.002 (4)
C160.036 (5)0.033 (4)0.028 (4)−0.010 (3)0.010 (3)0.006 (3)
C170.028 (5)0.045 (5)0.028 (4)−0.003 (4)0.000 (3)0.002 (3)
C180.023 (5)0.054 (5)0.042 (5)−0.005 (4)0.000 (4)0.005 (4)
C190.032 (5)0.046 (5)0.053 (5)0.004 (4)0.008 (4)0.003 (4)
C200.047 (6)0.047 (5)0.047 (5)0.008 (4)−0.002 (4)0.001 (4)
C210.036 (5)0.036 (5)0.059 (5)−0.001 (4)0.012 (4)0.012 (4)
C220.024 (5)0.050 (5)0.044 (5)−0.002 (4)0.001 (3)0.007 (4)
Pd1—N12.027 (5)C9—H90.9500
Pd1—N22.031 (5)C10—C111.402 (9)
Pd1—I12.6178 (8)C10—H100.9500
Pd1—I22.6244 (8)C11—H110.9500
N1—C11.350 (8)C12—C131.369 (9)
N1—C51.356 (8)C12—H120.9500
N2—C121.328 (8)C13—C141.346 (9)
N2—C161.363 (8)C13—H130.9500
C1—C21.354 (9)C14—C151.378 (10)
C1—H10.9500C14—H140.9500
C2—C31.378 (9)C15—C161.415 (9)
C2—H20.9500C15—H150.9500
C3—C41.372 (9)C16—C171.481 (10)
C3—H30.9500C17—C221.386 (10)
C4—C51.384 (8)C17—C181.390 (10)
C4—H40.9500C18—C191.389 (10)
C5—C61.482 (9)C18—H180.9500
C6—C111.397 (9)C19—C201.389 (10)
C6—C71.397 (9)C19—H190.9500
C7—C81.384 (9)C20—C211.381 (11)
C7—H70.9500C20—H200.9500
C8—C91.370 (10)C21—C221.385 (10)
C8—H80.9500C21—H210.9500
C9—C101.380 (10)C22—H220.9500
N1—Pd1—N2178.8 (2)C9—C10—C11120.2 (7)
N1—Pd1—I188.78 (15)C9—C10—H10119.9
N2—Pd1—I189.99 (17)C11—C10—H10119.9
N1—Pd1—I291.51 (15)C6—C11—C10119.1 (7)
N2—Pd1—I289.71 (17)C6—C11—H11120.5
I1—Pd1—I2179.71 (3)C10—C11—H11120.5
C1—N1—C5118.2 (5)N2—C12—C13123.6 (7)
C1—N1—Pd1115.8 (4)N2—C12—H12118.2
C5—N1—Pd1125.6 (4)C13—C12—H12118.2
C12—N2—C16119.5 (6)C14—C13—C12118.3 (7)
C12—N2—Pd1116.3 (5)C14—C13—H13120.8
C16—N2—Pd1124.0 (5)C12—C13—H13120.8
N1—C1—C2124.0 (6)C13—C14—C15120.6 (7)
N1—C1—H1118.0C13—C14—H14119.7
C2—C1—H1118.0C15—C14—H14119.7
C1—C2—C3118.5 (7)C14—C15—C16119.3 (7)
C1—C2—H2120.7C14—C15—H15120.3
C3—C2—H2120.7C16—C15—H15120.3
C4—C3—C2118.4 (6)N2—C16—C15118.6 (7)
C4—C3—H3120.8N2—C16—C17121.9 (6)
C2—C3—H3120.8C15—C16—C17119.5 (7)
C3—C4—C5121.4 (6)C22—C17—C18118.6 (7)
C3—C4—H4119.3C22—C17—C16121.9 (7)
C5—C4—H4119.3C18—C17—C16119.4 (7)
N1—C5—C4119.6 (6)C19—C18—C17120.5 (8)
N1—C5—C6119.7 (5)C19—C18—H18119.8
C4—C5—C6120.7 (6)C17—C18—H18119.8
C11—C6—C7119.5 (6)C20—C19—C18120.3 (8)
C11—C6—C5121.7 (7)C20—C19—H19119.8
C7—C6—C5118.7 (6)C18—C19—H19119.8
C8—C7—C6120.3 (7)C21—C20—C19119.2 (8)
C8—C7—H7119.8C21—C20—H20120.4
C6—C7—H7119.8C19—C20—H20120.4
C9—C8—C7120.1 (7)C20—C21—C22120.4 (8)
C9—C8—H8119.9C20—C21—H21119.8
C7—C8—H8119.9C22—C21—H21119.8
C8—C9—C10120.6 (7)C21—C22—C17121.0 (8)
C8—C9—H9119.7C21—C22—H22119.5
C10—C9—H9119.7C17—C22—H22119.5
I1—Pd1—N1—C1−100.1 (5)C8—C9—C10—C110.1 (11)
I2—Pd1—N1—C179.8 (5)C7—C6—C11—C102.6 (9)
I1—Pd1—N1—C572.3 (5)C5—C6—C11—C10179.2 (6)
I2—Pd1—N1—C5−107.7 (5)C9—C10—C11—C6−1.2 (10)
I1—Pd1—N2—C12−78.3 (5)C16—N2—C12—C130.5 (11)
I2—Pd1—N2—C12101.7 (5)Pd1—N2—C12—C13−175.6 (6)
I1—Pd1—N2—C16105.8 (6)N2—C12—C13—C14−1.2 (12)
I2—Pd1—N2—C16−74.2 (6)C12—C13—C14—C150.9 (12)
C5—N1—C1—C2−0.7 (10)C13—C14—C15—C160.0 (12)
Pd1—N1—C1—C2172.3 (6)C12—N2—C16—C150.5 (10)
N1—C1—C2—C30.1 (11)Pd1—N2—C16—C15176.3 (5)
C1—C2—C3—C41.5 (11)C12—N2—C16—C17−179.3 (7)
C2—C3—C4—C5−2.6 (11)Pd1—N2—C16—C17−3.5 (10)
C1—N1—C5—C4−0.3 (9)C14—C15—C16—N2−0.7 (11)
Pd1—N1—C5—C4−172.6 (5)C14—C15—C16—C17179.1 (7)
C1—N1—C5—C6178.5 (6)N2—C16—C17—C22−47.9 (10)
Pd1—N1—C5—C66.3 (9)C15—C16—C17—C22132.3 (8)
C3—C4—C5—N12.0 (11)N2—C16—C17—C18136.7 (7)
C3—C4—C5—C6−176.9 (7)C15—C16—C17—C18−43.1 (10)
N1—C5—C6—C1152.8 (9)C22—C17—C18—C191.7 (11)
C4—C5—C6—C11−128.4 (7)C16—C17—C18—C19177.3 (7)
N1—C5—C6—C7−130.6 (7)C17—C18—C19—C20−2.0 (12)
C4—C5—C6—C748.2 (9)C18—C19—C20—C211.1 (12)
C11—C6—C7—C8−3.0 (10)C19—C20—C21—C220.1 (12)
C5—C6—C7—C8−179.7 (6)C20—C21—C22—C17−0.5 (12)
C6—C7—C8—C91.9 (11)C18—C17—C22—C21−0.5 (11)
C7—C8—C9—C10−0.5 (11)C16—C17—C22—C21−175.9 (7)
Table 1

Selected bond lengths (Å)

Pd1—N12.027 (5)
Pd1—N22.031 (5)
Pd1—I12.6178 (8)
Pd1—I22.6244 (8)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  cis-Dibromidobis(2-phenyl-pyridine-κN)platinum(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11
  1 in total

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