| Literature DB >> 22346796 |
Kwang Ha1.
Abstract
In the title complex, [PdI(2)(C(11)H(9)N)(2)], the Pd(II) ion has a distorted trans-I(2)N(2) square-planar coordination geometry defined by two N atoms from two 2-phenyl-pyridine ligands and two I(-) anions. The 2-phenyl-pyridine ligands are not planar, the dihedral angles between the pyridine and benzene rings being 50.1 (2) and 45.7 (2)°. An inter-molecular π-π inter-action between the six-membered rings is present, the ring centroid-centroid distance being 3.898 (4) Å.Entities:
Year: 2012 PMID: 22346796 PMCID: PMC3274849 DOI: 10.1107/S1600536811055425
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdI2(C11H9N)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3071 reflections |
| θ = 2.5–27.7° | |
| µ = 3.85 mm−1 | |
| β = 103.663 (2)° | Plate, red |
| 0.25 × 0.23 × 0.11 mm | |
| Bruker SMART 1000 CCD diffractometer | 5163 independent reflections |
| Radiation source: fine-focus sealed tube | 2650 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 15087 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5163 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 2.20 e Å−3 |
| 0 restraints | Δρmin = −1.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.75033 (5) | 0.14770 (3) | 0.24074 (3) | 0.02261 (13) | |
| I1 | 0.61261 (5) | 0.14579 (3) | 0.36973 (3) | 0.03177 (14) | |
| I2 | 0.88936 (5) | 0.15018 (3) | 0.11195 (3) | 0.03134 (14) | |
| N1 | 0.6117 (5) | 0.0560 (3) | 0.1689 (3) | 0.0223 (12) | |
| N2 | 0.8874 (6) | 0.2392 (4) | 0.3151 (4) | 0.0294 (14) | |
| C1 | 0.6530 (7) | −0.0331 (4) | 0.1743 (4) | 0.0282 (16) | |
| H1 | 0.7465 | −0.0464 | 0.2043 | 0.034* | |
| C2 | 0.5691 (8) | −0.1047 (5) | 0.1396 (5) | 0.0365 (19) | |
| H2 | 0.6031 | −0.1663 | 0.1452 | 0.044* | |
| C3 | 0.4332 (8) | −0.0863 (5) | 0.0959 (5) | 0.0339 (18) | |
| H3 | 0.3708 | −0.1349 | 0.0720 | 0.041* | |
| C4 | 0.3903 (7) | 0.0041 (5) | 0.0877 (5) | 0.0325 (18) | |
| H4 | 0.2980 | 0.0181 | 0.0556 | 0.039* | |
| C5 | 0.4787 (7) | 0.0753 (4) | 0.1254 (4) | 0.0249 (16) | |
| C6 | 0.4288 (7) | 0.1721 (4) | 0.1201 (4) | 0.0252 (16) | |
| C7 | 0.3044 (7) | 0.1915 (5) | 0.1446 (4) | 0.0281 (16) | |
| H7 | 0.2540 | 0.1430 | 0.1645 | 0.034* | |
| C8 | 0.2542 (8) | 0.2810 (5) | 0.1401 (5) | 0.0382 (19) | |
| H8 | 0.1710 | 0.2940 | 0.1587 | 0.046* | |
| C9 | 0.3244 (8) | 0.3508 (5) | 0.1090 (5) | 0.0354 (18) | |
| H9 | 0.2890 | 0.4120 | 0.1056 | 0.043* | |
| C10 | 0.4459 (7) | 0.3331 (5) | 0.0824 (5) | 0.0319 (18) | |
| H10 | 0.4938 | 0.3821 | 0.0610 | 0.038* | |
| C11 | 0.4991 (7) | 0.2430 (5) | 0.0868 (4) | 0.0299 (17) | |
| H11 | 0.5818 | 0.2303 | 0.0674 | 0.036* | |
| C12 | 0.8459 (8) | 0.3265 (5) | 0.3126 (5) | 0.0348 (19) | |
| H12 | 0.7536 | 0.3406 | 0.2805 | 0.042* | |
| C13 | 0.9289 (8) | 0.3975 (5) | 0.3540 (5) | 0.043 (2) | |
| H13 | 0.8956 | 0.4592 | 0.3496 | 0.052* | |
| C14 | 1.0588 (8) | 0.3775 (5) | 0.4010 (5) | 0.040 (2) | |
| H14 | 1.1177 | 0.4255 | 0.4310 | 0.048* | |
| C15 | 1.1072 (8) | 0.2880 (5) | 0.4060 (5) | 0.042 (2) | |
| H15 | 1.1990 | 0.2742 | 0.4393 | 0.051* | |
| C16 | 1.0189 (8) | 0.2168 (5) | 0.3612 (5) | 0.0321 (18) | |
| C17 | 1.0712 (8) | 0.1208 (5) | 0.3653 (5) | 0.0351 (19) | |
| C18 | 1.2040 (8) | 0.1041 (6) | 0.3535 (5) | 0.041 (2) | |
| H18 | 1.2584 | 0.1540 | 0.3402 | 0.049* | |
| C19 | 1.2577 (8) | 0.0150 (5) | 0.3609 (5) | 0.044 (2) | |
| H19 | 1.3474 | 0.0041 | 0.3508 | 0.053* | |
| C20 | 1.1810 (9) | −0.0581 (6) | 0.3831 (5) | 0.049 (2) | |
| H20 | 1.2183 | −0.1189 | 0.3893 | 0.059* | |
| C21 | 1.0499 (8) | −0.0414 (5) | 0.3962 (5) | 0.044 (2) | |
| H21 | 0.9967 | −0.0909 | 0.4116 | 0.053* | |
| C22 | 0.9956 (8) | 0.0471 (5) | 0.3871 (5) | 0.041 (2) | |
| H22 | 0.9050 | 0.0576 | 0.3958 | 0.049* |
| Pd1 | 0.0173 (3) | 0.0242 (3) | 0.0258 (3) | −0.0034 (2) | 0.0040 (2) | −0.0018 (2) |
| I1 | 0.0291 (3) | 0.0354 (3) | 0.0328 (3) | −0.0015 (2) | 0.0115 (2) | −0.0018 (2) |
| I2 | 0.0253 (3) | 0.0370 (3) | 0.0331 (3) | −0.0029 (2) | 0.0095 (2) | −0.0013 (2) |
| N1 | 0.017 (3) | 0.027 (3) | 0.021 (3) | −0.005 (2) | 0.001 (2) | 0.001 (2) |
| N2 | 0.026 (4) | 0.031 (3) | 0.029 (3) | −0.011 (3) | 0.002 (3) | −0.001 (3) |
| C1 | 0.029 (4) | 0.024 (4) | 0.032 (4) | 0.002 (3) | 0.009 (3) | −0.003 (3) |
| C2 | 0.045 (5) | 0.021 (4) | 0.044 (5) | −0.001 (3) | 0.011 (4) | −0.005 (3) |
| C3 | 0.030 (5) | 0.038 (4) | 0.032 (4) | −0.013 (4) | 0.003 (3) | −0.002 (3) |
| C4 | 0.030 (5) | 0.041 (5) | 0.024 (4) | 0.002 (4) | 0.001 (3) | 0.009 (3) |
| C5 | 0.031 (4) | 0.025 (4) | 0.016 (3) | −0.004 (3) | 0.002 (3) | −0.002 (3) |
| C6 | 0.018 (4) | 0.030 (4) | 0.025 (4) | 0.002 (3) | 0.001 (3) | 0.005 (3) |
| C7 | 0.026 (4) | 0.036 (4) | 0.026 (4) | −0.006 (3) | 0.014 (3) | 0.001 (3) |
| C8 | 0.023 (5) | 0.046 (5) | 0.046 (5) | 0.012 (4) | 0.010 (3) | 0.003 (4) |
| C9 | 0.037 (5) | 0.026 (4) | 0.042 (4) | 0.003 (4) | 0.007 (3) | 0.004 (4) |
| C10 | 0.030 (5) | 0.034 (4) | 0.034 (4) | −0.005 (3) | 0.011 (3) | −0.001 (3) |
| C11 | 0.020 (4) | 0.038 (4) | 0.029 (4) | 0.003 (3) | 0.002 (3) | 0.000 (3) |
| C12 | 0.046 (5) | 0.024 (4) | 0.035 (4) | −0.003 (3) | 0.011 (4) | −0.002 (3) |
| C13 | 0.044 (6) | 0.034 (5) | 0.053 (5) | −0.010 (4) | 0.014 (4) | −0.002 (4) |
| C14 | 0.039 (5) | 0.036 (5) | 0.043 (5) | −0.010 (4) | 0.005 (4) | −0.018 (4) |
| C15 | 0.039 (5) | 0.050 (5) | 0.034 (4) | −0.012 (4) | −0.001 (4) | −0.002 (4) |
| C16 | 0.036 (5) | 0.033 (4) | 0.028 (4) | −0.010 (3) | 0.010 (3) | 0.006 (3) |
| C17 | 0.028 (5) | 0.045 (5) | 0.028 (4) | −0.003 (4) | 0.000 (3) | 0.002 (3) |
| C18 | 0.023 (5) | 0.054 (5) | 0.042 (5) | −0.005 (4) | 0.000 (4) | 0.005 (4) |
| C19 | 0.032 (5) | 0.046 (5) | 0.053 (5) | 0.004 (4) | 0.008 (4) | 0.003 (4) |
| C20 | 0.047 (6) | 0.047 (5) | 0.047 (5) | 0.008 (4) | −0.002 (4) | 0.001 (4) |
| C21 | 0.036 (5) | 0.036 (5) | 0.059 (5) | −0.001 (4) | 0.012 (4) | 0.012 (4) |
| C22 | 0.024 (5) | 0.050 (5) | 0.044 (5) | −0.002 (4) | 0.001 (3) | 0.007 (4) |
| Pd1—N1 | 2.027 (5) | C9—H9 | 0.9500 |
| Pd1—N2 | 2.031 (5) | C10—C11 | 1.402 (9) |
| Pd1—I1 | 2.6178 (8) | C10—H10 | 0.9500 |
| Pd1—I2 | 2.6244 (8) | C11—H11 | 0.9500 |
| N1—C1 | 1.350 (8) | C12—C13 | 1.369 (9) |
| N1—C5 | 1.356 (8) | C12—H12 | 0.9500 |
| N2—C12 | 1.328 (8) | C13—C14 | 1.346 (9) |
| N2—C16 | 1.363 (8) | C13—H13 | 0.9500 |
| C1—C2 | 1.354 (9) | C14—C15 | 1.378 (10) |
| C1—H1 | 0.9500 | C14—H14 | 0.9500 |
| C2—C3 | 1.378 (9) | C15—C16 | 1.415 (9) |
| C2—H2 | 0.9500 | C15—H15 | 0.9500 |
| C3—C4 | 1.372 (9) | C16—C17 | 1.481 (10) |
| C3—H3 | 0.9500 | C17—C22 | 1.386 (10) |
| C4—C5 | 1.384 (8) | C17—C18 | 1.390 (10) |
| C4—H4 | 0.9500 | C18—C19 | 1.389 (10) |
| C5—C6 | 1.482 (9) | C18—H18 | 0.9500 |
| C6—C11 | 1.397 (9) | C19—C20 | 1.389 (10) |
| C6—C7 | 1.397 (9) | C19—H19 | 0.9500 |
| C7—C8 | 1.384 (9) | C20—C21 | 1.381 (11) |
| C7—H7 | 0.9500 | C20—H20 | 0.9500 |
| C8—C9 | 1.370 (10) | C21—C22 | 1.385 (10) |
| C8—H8 | 0.9500 | C21—H21 | 0.9500 |
| C9—C10 | 1.380 (10) | C22—H22 | 0.9500 |
| N1—Pd1—N2 | 178.8 (2) | C9—C10—C11 | 120.2 (7) |
| N1—Pd1—I1 | 88.78 (15) | C9—C10—H10 | 119.9 |
| N2—Pd1—I1 | 89.99 (17) | C11—C10—H10 | 119.9 |
| N1—Pd1—I2 | 91.51 (15) | C6—C11—C10 | 119.1 (7) |
| N2—Pd1—I2 | 89.71 (17) | C6—C11—H11 | 120.5 |
| I1—Pd1—I2 | 179.71 (3) | C10—C11—H11 | 120.5 |
| C1—N1—C5 | 118.2 (5) | N2—C12—C13 | 123.6 (7) |
| C1—N1—Pd1 | 115.8 (4) | N2—C12—H12 | 118.2 |
| C5—N1—Pd1 | 125.6 (4) | C13—C12—H12 | 118.2 |
| C12—N2—C16 | 119.5 (6) | C14—C13—C12 | 118.3 (7) |
| C12—N2—Pd1 | 116.3 (5) | C14—C13—H13 | 120.8 |
| C16—N2—Pd1 | 124.0 (5) | C12—C13—H13 | 120.8 |
| N1—C1—C2 | 124.0 (6) | C13—C14—C15 | 120.6 (7) |
| N1—C1—H1 | 118.0 | C13—C14—H14 | 119.7 |
| C2—C1—H1 | 118.0 | C15—C14—H14 | 119.7 |
| C1—C2—C3 | 118.5 (7) | C14—C15—C16 | 119.3 (7) |
| C1—C2—H2 | 120.7 | C14—C15—H15 | 120.3 |
| C3—C2—H2 | 120.7 | C16—C15—H15 | 120.3 |
| C4—C3—C2 | 118.4 (6) | N2—C16—C15 | 118.6 (7) |
| C4—C3—H3 | 120.8 | N2—C16—C17 | 121.9 (6) |
| C2—C3—H3 | 120.8 | C15—C16—C17 | 119.5 (7) |
| C3—C4—C5 | 121.4 (6) | C22—C17—C18 | 118.6 (7) |
| C3—C4—H4 | 119.3 | C22—C17—C16 | 121.9 (7) |
| C5—C4—H4 | 119.3 | C18—C17—C16 | 119.4 (7) |
| N1—C5—C4 | 119.6 (6) | C19—C18—C17 | 120.5 (8) |
| N1—C5—C6 | 119.7 (5) | C19—C18—H18 | 119.8 |
| C4—C5—C6 | 120.7 (6) | C17—C18—H18 | 119.8 |
| C11—C6—C7 | 119.5 (6) | C20—C19—C18 | 120.3 (8) |
| C11—C6—C5 | 121.7 (7) | C20—C19—H19 | 119.8 |
| C7—C6—C5 | 118.7 (6) | C18—C19—H19 | 119.8 |
| C8—C7—C6 | 120.3 (7) | C21—C20—C19 | 119.2 (8) |
| C8—C7—H7 | 119.8 | C21—C20—H20 | 120.4 |
| C6—C7—H7 | 119.8 | C19—C20—H20 | 120.4 |
| C9—C8—C7 | 120.1 (7) | C20—C21—C22 | 120.4 (8) |
| C9—C8—H8 | 119.9 | C20—C21—H21 | 119.8 |
| C7—C8—H8 | 119.9 | C22—C21—H21 | 119.8 |
| C8—C9—C10 | 120.6 (7) | C21—C22—C17 | 121.0 (8) |
| C8—C9—H9 | 119.7 | C21—C22—H22 | 119.5 |
| C10—C9—H9 | 119.7 | C17—C22—H22 | 119.5 |
| I1—Pd1—N1—C1 | −100.1 (5) | C8—C9—C10—C11 | 0.1 (11) |
| I2—Pd1—N1—C1 | 79.8 (5) | C7—C6—C11—C10 | 2.6 (9) |
| I1—Pd1—N1—C5 | 72.3 (5) | C5—C6—C11—C10 | 179.2 (6) |
| I2—Pd1—N1—C5 | −107.7 (5) | C9—C10—C11—C6 | −1.2 (10) |
| I1—Pd1—N2—C12 | −78.3 (5) | C16—N2—C12—C13 | 0.5 (11) |
| I2—Pd1—N2—C12 | 101.7 (5) | Pd1—N2—C12—C13 | −175.6 (6) |
| I1—Pd1—N2—C16 | 105.8 (6) | N2—C12—C13—C14 | −1.2 (12) |
| I2—Pd1—N2—C16 | −74.2 (6) | C12—C13—C14—C15 | 0.9 (12) |
| C5—N1—C1—C2 | −0.7 (10) | C13—C14—C15—C16 | 0.0 (12) |
| Pd1—N1—C1—C2 | 172.3 (6) | C12—N2—C16—C15 | 0.5 (10) |
| N1—C1—C2—C3 | 0.1 (11) | Pd1—N2—C16—C15 | 176.3 (5) |
| C1—C2—C3—C4 | 1.5 (11) | C12—N2—C16—C17 | −179.3 (7) |
| C2—C3—C4—C5 | −2.6 (11) | Pd1—N2—C16—C17 | −3.5 (10) |
| C1—N1—C5—C4 | −0.3 (9) | C14—C15—C16—N2 | −0.7 (11) |
| Pd1—N1—C5—C4 | −172.6 (5) | C14—C15—C16—C17 | 179.1 (7) |
| C1—N1—C5—C6 | 178.5 (6) | N2—C16—C17—C22 | −47.9 (10) |
| Pd1—N1—C5—C6 | 6.3 (9) | C15—C16—C17—C22 | 132.3 (8) |
| C3—C4—C5—N1 | 2.0 (11) | N2—C16—C17—C18 | 136.7 (7) |
| C3—C4—C5—C6 | −176.9 (7) | C15—C16—C17—C18 | −43.1 (10) |
| N1—C5—C6—C11 | 52.8 (9) | C22—C17—C18—C19 | 1.7 (11) |
| C4—C5—C6—C11 | −128.4 (7) | C16—C17—C18—C19 | 177.3 (7) |
| N1—C5—C6—C7 | −130.6 (7) | C17—C18—C19—C20 | −2.0 (12) |
| C4—C5—C6—C7 | 48.2 (9) | C18—C19—C20—C21 | 1.1 (12) |
| C11—C6—C7—C8 | −3.0 (10) | C19—C20—C21—C22 | 0.1 (12) |
| C5—C6—C7—C8 | −179.7 (6) | C20—C21—C22—C17 | −0.5 (12) |
| C6—C7—C8—C9 | 1.9 (11) | C18—C17—C22—C21 | −0.5 (11) |
| C7—C8—C9—C10 | −0.5 (11) | C16—C17—C22—C21 | −175.9 (7) |
Selected bond lengths (Å)
| Pd1—N1 | 2.027 (5) |
| Pd1—N2 | 2.031 (5) |
| Pd1—I1 | 2.6178 (8) |
| Pd1—I2 | 2.6244 (8) |