| Literature DB >> 22346789 |
Shaunna M Morrison1, Robert T Downs, Hexiong Yang.
Abstract
The crystal structure of kovdorskite, ideally Mg(2)PO(4)(OH)·3H(2)O (dimagnesium phosphate hydroxide trihydrate), was reported previously with isotropic displacement paramaters only and without H-atom positions [Ovchinnikov et al. (1980 ▶). Dokl. Akad. Nauk SSSR.255, 351-354]. In this study, the kovdorskite structure is redetermined based on single-crystal X-ray diffraction data from a sample from the type locality, the Kovdor massif, Kola Peninsula, Russia, with anisotropic displacement parameters for all non-H atoms, with all H-atom located and with higher precision. Moreover, inconsistencies of the previously published structural data with respect to reported and calculated X-ray powder patterns are also discussed. The structure of kovdorskite contains a set of four edge-sharing MgO(6) octa-hedra inter-connected by PO(4) tetra-hedra and O-H⋯O hydrogen bonds, forming columns and channels parallel to [001]. The hydrogen-bonding system in kovdorskite is formed through the water mol-ecules, with the OH(-) ions contributing little, if any, to the system, as indicated by the long H⋯A distances (>2.50 Å) to the nearest O atoms. The hydrogen-bond lengths determined from the structure refinement agree well with Raman spectroscopic data.Entities:
Year: 2012 PMID: 22346789 PMCID: PMC3274836 DOI: 10.1107/S1600536812000256
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| Mg2PO4(OH)·3H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yab | Cell parameters from 4644 reflections |
| θ = 2.7–32.5° | |
| µ = 0.65 mm−1 | |
| β = 105.054 (1)° | Cuboid, colorless |
| 0.10 × 0.09 × 0.09 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2231 independent reflections |
| Radiation source: fine-focus sealed tube | 2008 reflections with |
| graphite | |
| φ and ω scan | θmax = 32.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 8463 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max = 0.001 | |
| 2231 reflections | Δρmax = 0.50 e Å−3 |
| 129 parameters | Δρmin = −0.34 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.014 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Mg1 | 0.15418 (3) | 0.48809 (3) | 0.04828 (7) | 0.00906 (8) | |
| Mg2 | 0.49666 (3) | 0.21171 (3) | 0.93433 (7) | 0.00854 (8) | |
| P1 | 0.21969 (2) | 0.321419 (19) | 0.59573 (5) | 0.00682 (7) | |
| O1 | 0.34918 (7) | 0.26654 (6) | 0.58522 (15) | 0.01002 (14) | |
| O2 | 0.13841 (7) | 0.24609 (5) | 0.73290 (15) | 0.01022 (14) | |
| O3 | 0.14008 (7) | 0.35212 (6) | 0.28575 (14) | 0.01018 (14) | |
| O4 | 0.25621 (7) | 0.41919 (6) | 0.78609 (15) | 0.01050 (14) | |
| OH5 | 0.01976 (7) | 0.56414 (5) | 0.22485 (15) | 0.00943 (13) | |
| OW6 | 0.16539 (8) | 0.64623 (6) | −0.12401 (16) | 0.01279 (14) | |
| OW7 | 0.32209 (8) | 0.53186 (7) | 0.35888 (18) | 0.01745 (16) | |
| OW8 | 0.48594 (8) | 0.34594 (7) | 1.16317 (18) | 0.01686 (16) | |
| H1 | 0.0319 (18) | 0.5627 (14) | 0.419 (4) | 0.034 (5)* | |
| H2 | 0.160 (2) | 0.6770 (16) | −0.298 (5) | 0.051 (6)* | |
| H3 | 0.2345 (18) | 0.6736 (13) | −0.005 (4) | 0.030 (4)* | |
| H4 | 0.3228 (19) | 0.5108 (14) | 0.536 (4) | 0.035 (5)* | |
| H5 | 0.353 (3) | 0.591 (2) | 0.371 (5) | 0.070 (8)* | |
| H6 | 0.4269 (19) | 0.3840 (15) | 1.068 (4) | 0.038 (5)* | |
| H7 | 0.468 (3) | 0.3322 (18) | 1.312 (6) | 0.063 (7)* |
| Mg1 | 0.00832 (15) | 0.00862 (16) | 0.00998 (15) | 0.00010 (12) | 0.00191 (11) | −0.00105 (11) |
| Mg2 | 0.00828 (15) | 0.00792 (16) | 0.00926 (15) | 0.00010 (12) | 0.00198 (11) | −0.00018 (11) |
| P1 | 0.00668 (11) | 0.00727 (12) | 0.00646 (11) | 0.00097 (8) | 0.00160 (7) | 0.00004 (7) |
| O1 | 0.0086 (3) | 0.0122 (3) | 0.0093 (3) | 0.0028 (3) | 0.0025 (2) | −0.0001 (2) |
| O2 | 0.0105 (3) | 0.0093 (3) | 0.0120 (3) | 0.0004 (3) | 0.0051 (2) | 0.0011 (2) |
| O3 | 0.0106 (3) | 0.0101 (3) | 0.0082 (3) | 0.0000 (3) | −0.0006 (2) | 0.0015 (2) |
| O4 | 0.0115 (3) | 0.0097 (3) | 0.0105 (3) | −0.0007 (3) | 0.0033 (2) | −0.0028 (2) |
| OH5 | 0.0103 (3) | 0.0095 (3) | 0.0082 (3) | 0.0003 (2) | 0.0018 (2) | 0.0000 (2) |
| OW6 | 0.0143 (3) | 0.0130 (3) | 0.0106 (3) | −0.0037 (3) | 0.0024 (3) | 0.0006 (3) |
| OW7 | 0.0181 (4) | 0.0163 (4) | 0.0149 (4) | −0.0043 (3) | −0.0011 (3) | −0.0001 (3) |
| OW8 | 0.0172 (4) | 0.0150 (4) | 0.0162 (4) | 0.0034 (3) | 0.0004 (3) | −0.0031 (3) |
| Mg1—O4i | 2.0407 (8) | Mg2—OW8 | 2.0644 (9) |
| Mg1—OH5ii | 2.0553 (8) | Mg2—O1 | 2.0720 (7) |
| Mg1—OW7 | 2.0573 (9) | Mg2—O3v | 2.0991 (8) |
| Mg1—OH5 | 2.0641 (8) | Mg2—OW6iv | 2.2798 (8) |
| Mg1—O3 | 2.1124 (8) | P1—O3 | 1.5390 (7) |
| Mg1—OW6 | 2.2162 (8) | P1—O4 | 1.5419 (7) |
| Mg2—O2iii | 2.0365 (8) | P1—O1 | 1.5434 (7) |
| Mg2—OH5iv | 2.0427 (8) | P1—O2 | 1.5436 (7) |
| O4i—Mg1—OH5ii | 89.62 (3) | O2iii—Mg2—O1 | 91.09 (3) |
| O4i—Mg1—OW7 | 93.92 (3) | OH5iv—Mg2—O1 | 92.98 (3) |
| OH5ii—Mg1—OW7 | 173.58 (4) | OW8—Mg2—O1 | 89.96 (3) |
| O4i—Mg1—OH5 | 167.00 (3) | O2iii—Mg2—O3v | 90.97 (3) |
| OH5ii—Mg1—OH5 | 79.87 (3) | OH5iv—Mg2—O3v | 84.20 (3) |
| OW7—Mg1—OH5 | 97.28 (3) | OW8—Mg2—O3v | 92.33 (3) |
| O4i—Mg1—O3 | 94.58 (3) | O1—Mg2—O3v | 176.63 (3) |
| OH5ii—Mg1—O3 | 83.55 (3) | O2iii—Mg2—OW6iv | 172.77 (3) |
| OW7—Mg1—O3 | 90.82 (3) | OH5iv—Mg2—OW6iv | 78.34 (3) |
| OH5—Mg1—O3 | 91.84 (3) | OW8—Mg2—OW6iv | 87.62 (3) |
| O4i—Mg1—OW6 | 95.35 (3) | O1—Mg2—OW6iv | 87.90 (3) |
| OH5ii—Mg1—OW6 | 101.25 (3) | O3v—Mg2—OW6iv | 89.74 (3) |
| OW7—Mg1—OW6 | 83.77 (3) | O3—P1—O4 | 109.62 (4) |
| OH5—Mg1—OW6 | 79.40 (3) | O3—P1—O1 | 110.58 (4) |
| O3—Mg1—OW6 | 168.99 (3) | O4—P1—O1 | 108.00 (4) |
| O2iii—Mg2—OH5iv | 94.57 (3) | O3—P1—O2 | 109.98 (4) |
| O2iii—Mg2—OW8 | 99.54 (3) | O4—P1—O2 | 110.63 (4) |
| OH5iv—Mg2—OW8 | 165.53 (4) | O1—P1—O2 | 107.99 (4) |
| H··· | ||||
| OH5—H1···OW6vi | 0.892 (17) | 2.497 (18) | 3.2408 (10) | 141.3 (15) |
| OH5—H1···OH5vii | 0.892 (17) | 2.511 (18) | 3.2033 (14) | 134.9 (15) |
| OW6—H2···O1viii | 0.90 (2) | 1.77 (2) | 2.6518 (10) | 165.3 (19) |
| OW6—H3···O2ix | 0.869 (18) | 1.849 (19) | 2.7097 (10) | 170.4 (17) |
| OW7—H4···O4 | 0.88 (2) | 1.93 (2) | 2.7221 (11) | 149.4 (17) |
| OW7—H5···O2ix | 0.83 (3) | 2.07 (3) | 2.8513 (11) | 157 (2) |
| OW8—H6···O4 | 0.83 (2) | 1.99 (2) | 2.7647 (11) | 156.7 (18) |
| OW8—H7···O1vi | 0.79 (3) | 2.19 (3) | 2.9294 (11) | 156 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O | 0.892 (17) | 2.497 (18) | 3.2408 (10) | 141.3 (15) |
| O | 0.892 (17) | 2.511 (18) | 3.2033 (14) | 134.9 (15) |
| O | 0.90 (2) | 1.77 (2) | 2.6518 (10) | 165.3 (19) |
| O | 0.869 (18) | 1.849 (19) | 2.7097 (10) | 170.4 (17) |
| O | 0.88 (2) | 1.93 (2) | 2.7221 (11) | 149.4 (17) |
| O | 0.83 (3) | 2.07 (3) | 2.8513 (11) | 157 (2) |
| O | 0.83 (2) | 1.99 (2) | 2.7647 (11) | 156.7 (18) |
| O | 0.79 (3) | 2.19 (3) | 2.9294 (11) | 156 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .