Literature DB >> 22346789

Redetermination of kovdorskite, Mg(2)PO(4)(OH)·3H(2)O.

Shaunna M Morrison1, Robert T Downs, Hexiong Yang.   

Abstract

The crystal structure of kovdorskite, ideally Mg(2)PO(4)(OH)·3H(2)O (dimagnesium phosphate hydroxide trihydrate), was reported previously with isotropic displacement paramaters only and without H-atom positions [Ovchinnikov et al. (1980 ▶). Dokl. Akad. Nauk SSSR.255, 351-354]. In this study, the kovdorskite structure is redetermined based on single-crystal X-ray diffraction data from a sample from the type locality, the Kovdor massif, Kola Peninsula, Russia, with anisotropic displacement parameters for all non-H atoms, with all H-atom located and with higher precision. Moreover, inconsistencies of the previously published structural data with respect to reported and calculated X-ray powder patterns are also discussed. The structure of kovdorskite contains a set of four edge-sharing MgO(6) octa-hedra inter-connected by PO(4) tetra-hedra and O-H⋯O hydrogen bonds, forming columns and channels parallel to [001]. The hydrogen-bonding system in kovdorskite is formed through the water mol-ecules, with the OH(-) ions contributing little, if any, to the system, as indicated by the long H⋯A distances (>2.50 Å) to the nearest O atoms. The hydrogen-bond lengths determined from the structure refinement agree well with Raman spectroscopic data.

Entities:  

Year:  2012        PMID: 22346789      PMCID: PMC3274836          DOI: 10.1107/S1600536812000256

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to kovdorskite, see: Kapustin et al. (1980 ▶); Ovchinnikov et al. (1980 ▶); Ponomareva (1990 ▶); Lake & Craven (2001 ▶). For biomaterials studies of hydrated magnesium phosphates, see: Sutor et al. (1974 ▶); Tamimi et al. (2011 ▶); Klammert et al. (2011 ▶). For applications of hydrated magnesium phosphates in the refractories industry, see: Kingery (1950 ▶, 1952 ▶); Lyon et al. (1966 ▶); Sarkar (1990 ▶). For applications of hydrated magnesium phosphate in fertilizers, see: Pelly & Bar-On (1979 ▶). For Raman spectra of related systems, see: Frost et al. (2002 ▶, 2011 ▶). For correlations between O—H streching frequencies and O—H⋯O donor–acceptor distances, see: Libowitzky (1999 ▶).

Experimental

Crystal data

Mg2PO4(OH)·3H2O M = 214.65 Monoclinic, a = 10.4785 (1) Å b = 12.9336 (2) Å c = 4.7308 (1) Å β = 105.054 (1)° V = 619.14 (2) Å3 Z = 4 Mo Kα radiation μ = 0.65 mm−1 T = 293 K 0.10 × 0.09 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2005 ▶) T min = 0.938, T max = 0.944 8463 measured reflections 2231 independent reflections 2008 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.056 S = 1.07 2231 reflections 129 parameters All H-atom parameters refined Δρmax = 0.50 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XtalDraw (Downs & Hall-Wallace, 2003 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000256/wm2577sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000256/wm2577Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Mg2PO4(OH)·3H2OF(000) = 440
Mr = 214.65Dx = 2.303 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 4644 reflections
a = 10.4785 (1) Åθ = 2.7–32.5°
b = 12.9336 (2) ŵ = 0.65 mm1
c = 4.7308 (1) ÅT = 293 K
β = 105.054 (1)°Cuboid, colorless
V = 619.14 (2) Å30.10 × 0.09 × 0.09 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2231 independent reflections
Radiation source: fine-focus sealed tube2008 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scanθmax = 32.5°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2005)h = −15→13
Tmin = 0.938, Tmax = 0.944k = −15→19
8463 measured reflectionsl = −7→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022All H-atom parameters refined
wR(F2) = 0.056w = 1/[σ2(Fo2) + (0.0278P)2 + 0.150P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2231 reflectionsΔρmax = 0.50 e Å3
129 parametersΔρmin = −0.34 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mg10.15418 (3)0.48809 (3)0.04828 (7)0.00906 (8)
Mg20.49666 (3)0.21171 (3)0.93433 (7)0.00854 (8)
P10.21969 (2)0.321419 (19)0.59573 (5)0.00682 (7)
O10.34918 (7)0.26654 (6)0.58522 (15)0.01002 (14)
O20.13841 (7)0.24609 (5)0.73290 (15)0.01022 (14)
O30.14008 (7)0.35212 (6)0.28575 (14)0.01018 (14)
O40.25621 (7)0.41919 (6)0.78609 (15)0.01050 (14)
OH50.01976 (7)0.56414 (5)0.22485 (15)0.00943 (13)
OW60.16539 (8)0.64623 (6)−0.12401 (16)0.01279 (14)
OW70.32209 (8)0.53186 (7)0.35888 (18)0.01745 (16)
OW80.48594 (8)0.34594 (7)1.16317 (18)0.01686 (16)
H10.0319 (18)0.5627 (14)0.419 (4)0.034 (5)*
H20.160 (2)0.6770 (16)−0.298 (5)0.051 (6)*
H30.2345 (18)0.6736 (13)−0.005 (4)0.030 (4)*
H40.3228 (19)0.5108 (14)0.536 (4)0.035 (5)*
H50.353 (3)0.591 (2)0.371 (5)0.070 (8)*
H60.4269 (19)0.3840 (15)1.068 (4)0.038 (5)*
H70.468 (3)0.3322 (18)1.312 (6)0.063 (7)*
U11U22U33U12U13U23
Mg10.00832 (15)0.00862 (16)0.00998 (15)0.00010 (12)0.00191 (11)−0.00105 (11)
Mg20.00828 (15)0.00792 (16)0.00926 (15)0.00010 (12)0.00198 (11)−0.00018 (11)
P10.00668 (11)0.00727 (12)0.00646 (11)0.00097 (8)0.00160 (7)0.00004 (7)
O10.0086 (3)0.0122 (3)0.0093 (3)0.0028 (3)0.0025 (2)−0.0001 (2)
O20.0105 (3)0.0093 (3)0.0120 (3)0.0004 (3)0.0051 (2)0.0011 (2)
O30.0106 (3)0.0101 (3)0.0082 (3)0.0000 (3)−0.0006 (2)0.0015 (2)
O40.0115 (3)0.0097 (3)0.0105 (3)−0.0007 (3)0.0033 (2)−0.0028 (2)
OH50.0103 (3)0.0095 (3)0.0082 (3)0.0003 (2)0.0018 (2)0.0000 (2)
OW60.0143 (3)0.0130 (3)0.0106 (3)−0.0037 (3)0.0024 (3)0.0006 (3)
OW70.0181 (4)0.0163 (4)0.0149 (4)−0.0043 (3)−0.0011 (3)−0.0001 (3)
OW80.0172 (4)0.0150 (4)0.0162 (4)0.0034 (3)0.0004 (3)−0.0031 (3)
Mg1—O4i2.0407 (8)Mg2—OW82.0644 (9)
Mg1—OH5ii2.0553 (8)Mg2—O12.0720 (7)
Mg1—OW72.0573 (9)Mg2—O3v2.0991 (8)
Mg1—OH52.0641 (8)Mg2—OW6iv2.2798 (8)
Mg1—O32.1124 (8)P1—O31.5390 (7)
Mg1—OW62.2162 (8)P1—O41.5419 (7)
Mg2—O2iii2.0365 (8)P1—O11.5434 (7)
Mg2—OH5iv2.0427 (8)P1—O21.5436 (7)
O4i—Mg1—OH5ii89.62 (3)O2iii—Mg2—O191.09 (3)
O4i—Mg1—OW793.92 (3)OH5iv—Mg2—O192.98 (3)
OH5ii—Mg1—OW7173.58 (4)OW8—Mg2—O189.96 (3)
O4i—Mg1—OH5167.00 (3)O2iii—Mg2—O3v90.97 (3)
OH5ii—Mg1—OH579.87 (3)OH5iv—Mg2—O3v84.20 (3)
OW7—Mg1—OH597.28 (3)OW8—Mg2—O3v92.33 (3)
O4i—Mg1—O394.58 (3)O1—Mg2—O3v176.63 (3)
OH5ii—Mg1—O383.55 (3)O2iii—Mg2—OW6iv172.77 (3)
OW7—Mg1—O390.82 (3)OH5iv—Mg2—OW6iv78.34 (3)
OH5—Mg1—O391.84 (3)OW8—Mg2—OW6iv87.62 (3)
O4i—Mg1—OW695.35 (3)O1—Mg2—OW6iv87.90 (3)
OH5ii—Mg1—OW6101.25 (3)O3v—Mg2—OW6iv89.74 (3)
OW7—Mg1—OW683.77 (3)O3—P1—O4109.62 (4)
OH5—Mg1—OW679.40 (3)O3—P1—O1110.58 (4)
O3—Mg1—OW6168.99 (3)O4—P1—O1108.00 (4)
O2iii—Mg2—OH5iv94.57 (3)O3—P1—O2109.98 (4)
O2iii—Mg2—OW899.54 (3)O4—P1—O2110.63 (4)
OH5iv—Mg2—OW8165.53 (4)O1—P1—O2107.99 (4)
D—H···AD—HH···AD···AD—H···A
OH5—H1···OW6vi0.892 (17)2.497 (18)3.2408 (10)141.3 (15)
OH5—H1···OH5vii0.892 (17)2.511 (18)3.2033 (14)134.9 (15)
OW6—H2···O1viii0.90 (2)1.77 (2)2.6518 (10)165.3 (19)
OW6—H3···O2ix0.869 (18)1.849 (19)2.7097 (10)170.4 (17)
OW7—H4···O40.88 (2)1.93 (2)2.7221 (11)149.4 (17)
OW7—H5···O2ix0.83 (3)2.07 (3)2.8513 (11)157 (2)
OW8—H6···O40.83 (2)1.99 (2)2.7647 (11)156.7 (18)
OW8—H7···O1vi0.79 (3)2.19 (3)2.9294 (11)156 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
OH5—H1⋯OW6i0.892 (17)2.497 (18)3.2408 (10)141.3 (15)
OH5—H1⋯OH5ii0.892 (17)2.511 (18)3.2033 (14)134.9 (15)
OW6—H2⋯O1iii0.90 (2)1.77 (2)2.6518 (10)165.3 (19)
OW6—H3⋯O2iv0.869 (18)1.849 (19)2.7097 (10)170.4 (17)
OW7—H4⋯O40.88 (2)1.93 (2)2.7221 (11)149.4 (17)
OW7—H5⋯O2iv0.83 (3)2.07 (3)2.8513 (11)157 (2)
OW8—H6⋯O40.83 (2)1.99 (2)2.7647 (11)156.7 (18)
OW8—H7⋯O1i0.79 (3)2.19 (3)2.9294 (11)156 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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