Literature DB >> 22345620

PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies.

Volker Steiß1, Thomas Letschert, Helmut Schäfer, Roman Pahl.   

Abstract

UNLABELLED: PERMORY is software for accelerated permutation testing of genome-wide association studies (GWAS). We have parallelized PERMORY using the Message-Passing Interface resulting in a nearly linear speedup. Furthermore, we added accelerated analysis of GWAS using quantitative phenotypes, and an accurate estimation of the effective number of independent tests.
AVAILABILITY AND IMPLEMENTATION: Free download from http://permory.org.

Mesh：

Year:  2012        PMID： 22345620     DOI： 10.1093/bioinformatics/bts086

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Second-generation PLINK: rising to the challenge of larger and richer datasets.

Authors:  Christopher C Chang; Carson C Chow; Laurent Cam Tellier; Shashaank Vattikuti; Shaun M Purcell; James J Lee
Journal:  Gigascience       Date:  2015-02-25       Impact factor: 6.524

2.  Cell-to-cell expression dispersion of B-cell surface proteins is linked to genetic variants in humans.

Authors:  Gérard Triqueneaux; Claire Burny; Orsolya Symmons; Stéphane Janczarski; Henri Gruffat; Gaël Yvert
Journal:  Commun Biol       Date:  2020-07-03

3.  The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.

Authors:  Kris A Christensen; Eric B Rondeau; David R Minkley; Jong S Leong; Cameron M Nugent; Roy G Danzmann; Moira M Ferguson; Agnieszka Stadnik; Robert H Devlin; Robin Muzzerall; Michael Edwards; William S Davidson; Ben F Koop
Journal:  PLoS One       Date:  2018-09-13       Impact factor: 3.240

4.  Pigment Intensity in Dogs is Associated with a Copy Number Variant Upstream of KITLG.

Authors:  Kalie Weich; Verena Affolter; Daniel York; Robert Rebhun; Robert Grahn; Angelica Kallenberg; Danika Bannasch
Journal:  Genes (Basel)       Date:  2020-01-09       Impact factor: 4.096

5.  Association of CASR, CALCR, and ORAI1 Genes Polymorphisms With the Calcium Urolithiasis Development in Russian Population.

Authors:  Maria M Litvinova; Kamil Khafizov; Vitaly I Korchagin; Anna S Speranskaya; Aliy Yu Asanov; Alina D Matsvay; Daniil A Kiselev; Diana V Svetlichnaya; Sevda Z Nuralieva; Alexey A Moskalev; Tamara V Filippova
Journal:  Front Genet       Date:  2021-05-12       Impact factor: 4.599

6.  Downregulation of growth plate genes involved with the onset of femoral head separation in young broilers.

Authors:  Adriana Mércia Guaratini Ibelli; Jane de Oliveira Peixoto; Ricardo Zanella; João José de Simoni Gouveia; Maurício Egídio Cantão; Luiz Lehmann Coutinho; Jorge Augusto Petroli Marchesi; Mariane Spudeit Dal Pizzol; Débora Ester Petry Marcelino; Mônica Corrêa Ledur
Journal:  Front Physiol       Date:  2022-08-08       Impact factor: 4.755

7.  Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance.

Authors:  Darci A Giacomini; Eric L Patterson; Anita Küpper; Roland Beffa; Todd A Gaines; Patrick J Tranel
Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416
  7 in total

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