Literature DB >> 22345602

Facilitating discovery: the role of Society Journals in collaborative science.

Lauren M McIntyre, Dirk Jan de Koning.   

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Year:  2012        PMID: 22345602      PMCID: PMC3276633          DOI: 10.1534/genetics.111.137935

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


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SCIENTIFIC progress requires hypotheses and ideas, but it is enabled by resources. Genetic resource panels (GRPs) like the “Collaborative Cross” are a unique resource for the scientific community. Because this resource allows repeated generation of particular genetic combinations, the impact of DNA sequence variation on a wide range of phenotypes can be readily studied. Renewable resource populations have been created for flies, maize, Arabidopsis, yeast, worms, and mice (e.g., Giaever ; Kamath ; Complex Trait Consortium 2004; Macdonald and Long 2007; Ayroles ; Kover ; McMullen ). With them phenotypic data for transcription, metabolites, proteins and whole organism can be linked to underlying genetic polymorphisms. These resources give scientists insight into how genetic variation percolates through the biological layers, from cells to the whole organism, from molecules to networks. One critical requirement for realizing the potential of these accumulating resources is that all data be publicly available, preferably accompanied with a set of online tools for mining them. The February 2012 issues of GENETICS and G3: Genes | Genomes | Genetics highlight the launch of the Collaborative Cross for mice and present the first exciting results, both data- and methods-driven, issuing from this cross. The most notable predecessor of the Collaborative Cross is the BXD panel of recombinant inbred lines for which a mass of phenotypic, transcriptomic, and genetic data are publically available online. Emerging technologies that allow measurements on single cells to complex behaviors mean that geneticists have the opportunity not only to revel in biological complexity but to deconstruct and understand it. How can society-sponsored, peer-edited journals like ours help the community in making the most of these exciting resources? GENETICS and G3 are sister journals committed to the highest level of scientific rigor. Both journals are committed to open access of all data used in their articles, and require that all the data are submitted to a public repository, or available as a supplement, thereby enabling others to connect the dots in their own experiments and analysis. We pay more than just lip service to our data policy. We believe it serves scientists and science well. Data sharing is particularly crucial for GRPs like the Collaborative Cross. If some of the pieces of the puzzle have been taken off the board and are only available only through a complex compact, then the puzzle is unlikely to be completed, and the community resource is compromised. Peer editors are invested in ensuring that these resources live up to their potential. The 15 articles on GRPs for the mouse in this month's issues of GENETICS and G3 illustrate The Editors’ vision for one way in which society-sponsored peer editing adds value for the scientific community. All the data associated with these papers is publicly available, and the authors are committed to its widest possible distribution. We are proud to provide a venue for the publication of such important work, and we will continue to facilitate publication of high-quality studies focused on this unique resource. The Editors of GENETICS and G3 are working together to maximize the full impact of such large scale endeavors. The scientific community needs new tools for analysis, as well as creative experiments that unlock the promise of GRPs. We welcome submissions of manuscripts that answer these broad challenges. We also invite submission of manuscripts that describe the use of the resources presented in this month's issues of Genetics and G3. The Editors of GENETICS and G3 are committed to publishing high-quality science and to supporting the scientific community. To that end, we seek to collaborate with scientific communities engaged in projects to develop genetic resources. We are developing ways to tag papers using specific metadata identifiers so all papers involving a particular GRP can be quickly located and collated. Look for our tags for mouse-GRP, mouse-CC, and mouse-DO. Tell us more about ways you think the journals of the Genetics Society of America can collaborate with and support our community.
  7 in total

1.  The Collaborative Cross, a community resource for the genetic analysis of complex traits.

Authors:  Gary A Churchill; David C Airey; Hooman Allayee; Joe M Angel; Alan D Attie; Jackson Beatty; William D Beavis; John K Belknap; Beth Bennett; Wade Berrettini; Andre Bleich; Molly Bogue; Karl W Broman; Kari J Buck; Ed Buckler; Margit Burmeister; Elissa J Chesler; James M Cheverud; Steven Clapcote; Melloni N Cook; Roger D Cox; John C Crabbe; Wim E Crusio; Ariel Darvasi; Christian F Deschepper; R W Doerge; Charles R Farber; Jiri Forejt; Daniel Gaile; Steven J Garlow; Hartmut Geiger; Howard Gershenfeld; Terry Gordon; Jing Gu; Weikuan Gu; Gerald de Haan; Nancy L Hayes; Craig Heller; Heinz Himmelbauer; Robert Hitzemann; Kent Hunter; Hui-Chen Hsu; Fuad A Iraqi; Boris Ivandic; Howard J Jacob; Ritsert C Jansen; Karl J Jepsen; Dabney K Johnson; Thomas E Johnson; Gerd Kempermann; Christina Kendziorski; Malak Kotb; R Frank Kooy; Bastien Llamas; Frank Lammert; Jean-Michel Lassalle; Pedro R Lowenstein; Lu Lu; Aldons Lusis; Kenneth F Manly; Ralph Marcucio; Doug Matthews; Juan F Medrano; Darla R Miller; Guy Mittleman; Beverly A Mock; Jeffrey S Mogil; Xavier Montagutelli; Grant Morahan; David G Morris; Richard Mott; Joseph H Nadeau; Hiroki Nagase; Richard S Nowakowski; Bruce F O'Hara; Alexander V Osadchuk; Grier P Page; Beverly Paigen; Kenneth Paigen; Abraham A Palmer; Huei-Ju Pan; Leena Peltonen-Palotie; Jeremy Peirce; Daniel Pomp; Michal Pravenec; Daniel R Prows; Zhonghua Qi; Roger H Reeves; John Roder; Glenn D Rosen; Eric E Schadt; Leonard C Schalkwyk; Ze'ev Seltzer; Kazuhiro Shimomura; Siming Shou; Mikko J Sillanpää; Linda D Siracusa; Hans-Willem Snoeck; Jimmy L Spearow; Karen Svenson; Lisa M Tarantino; David Threadgill; Linda A Toth; William Valdar; Fernando Pardo-Manuel de Villena; Craig Warden; Steve Whatley; Robert W Williams; Tim Wiltshire; Nengjun Yi; Dabao Zhang; Min Zhang; Fei Zou
Journal:  Nat Genet       Date:  2004-11       Impact factor: 38.330

2.  Joint estimates of quantitative trait locus effect and frequency using synthetic recombinant populations of Drosophila melanogaster.

Authors:  Stuart J Macdonald; Anthony D Long
Journal:  Genetics       Date:  2007-04-15       Impact factor: 4.562

3.  Genetic properties of the maize nested association mapping population.

Authors:  Michael D McMullen; Stephen Kresovich; Hector Sanchez Villeda; Peter Bradbury; Huihui Li; Qi Sun; Sherry Flint-Garcia; Jeffry Thornsberry; Charlotte Acharya; Christopher Bottoms; Patrick Brown; Chris Browne; Magen Eller; Kate Guill; Carlos Harjes; Dallas Kroon; Nick Lepak; Sharon E Mitchell; Brooke Peterson; Gael Pressoir; Susan Romero; Marco Oropeza Rosas; Stella Salvo; Heather Yates; Mark Hanson; Elizabeth Jones; Stephen Smith; Jeffrey C Glaubitz; Major Goodman; Doreen Ware; James B Holland; Edward S Buckler
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

4.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

5.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

6.  A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana.

Authors:  Paula X Kover; William Valdar; Joseph Trakalo; Nora Scarcelli; Ian M Ehrenreich; Michael D Purugganan; Caroline Durrant; Richard Mott
Journal:  PLoS Genet       Date:  2009-07-10       Impact factor: 5.917

7.  Systems genetics of complex traits in Drosophila melanogaster.

Authors:  Julien F Ayroles; Mary Anna Carbone; Eric A Stone; Katherine W Jordan; Richard F Lyman; Michael M Magwire; Stephanie M Rollmann; Laura H Duncan; Faye Lawrence; Robert R H Anholt; Trudy F C Mackay
Journal:  Nat Genet       Date:  2009-02-22       Impact factor: 38.330

  7 in total
  2 in total

1.  GENETICS and G3: community-driven science, community-driven journals.

Authors:  Dirk-Jan de Koning; Lauren M McIntyre
Journal:  G3 (Bethesda)       Date:  2014-09-18       Impact factor: 3.154

2.  GENETICS and G3: community-driven science, community-driven journals.

Authors:  Dirk-Jan de Koning; Lauren McIntyre
Journal:  Genetics       Date:  2014-09       Impact factor: 4.562

  2 in total

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