Literature DB >> 22344292

The importance of knowing when to stop. A sequential stopping rule for component-wise gradient boosting.

A Mayr1, B Hofner, M Schmid.   

Abstract

OBJECTIVES: Component-wise boosting algorithms have evolved into a popular estimation scheme in biomedical regression settings. The iteration number of these algorithms is the most important tuning parameter to optimize their performance. To date, no fully automated strategy for determining the optimal stopping iteration of boosting algorithms has been proposed.
METHODS: We propose a fully data-driven sequential stopping rule for boosting algorithms. It combines resampling methods with a modified version of an earlier stopping approach that depends on AIC-based information criteria. The new "subsampling after AIC" stopping rule is applied to component-wise gradient boosting algorithms.
RESULTS: The newly developed sequential stopping rule outperformed earlier approaches if applied to both simulated and real data. Specifically, it improved purely AIC-based methods when used for the microarray-based prediction of the recurrence of metastases for stage II colon cancer patients.
CONCLUSIONS: The proposed sequential stopping rule for boosting algorithms can help to identify the optimal stopping iteration already during the fitting process of the algorithm, at least for the most common loss functions.

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Year:  2012        PMID: 22344292     DOI: 10.3414/ME11-02-0030

Source DB:  PubMed          Journal:  Methods Inf Med        ISSN: 0026-1270            Impact factor:   2.176


  11 in total

1.  Boosted Multivariate Trees for Longitudinal Data.

Authors:  Amol Pande; Liang Li; Jeevanantham Rajeswaran; John Ehrlinger; Udaya B Kogalur; Eugene H Blackstone; Hemant Ishwaran
Journal:  Mach Learn       Date:  2016-11-04       Impact factor: 2.940

2.  Boosting for high-dimensional two-class prediction.

Authors:  Rok Blagus; Lara Lusa
Journal:  BMC Bioinformatics       Date:  2015-09-21       Impact factor: 3.169

3.  Controlling false discoveries in high-dimensional situations: boosting with stability selection.

Authors:  Benjamin Hofner; Luigi Boccuto; Markus Göker
Journal:  BMC Bioinformatics       Date:  2015-05-06       Impact factor: 3.169

4.  Boosting the concordance index for survival data--a unified framework to derive and evaluate biomarker combinations.

Authors:  Andreas Mayr; Matthias Schmid
Journal:  PLoS One       Date:  2014-01-06       Impact factor: 3.240

5.  Pathway-Based Kernel Boosting for the Analysis of Genome-Wide Association Studies.

Authors:  Stefanie Friedrichs; Juliane Manitz; Patricia Burger; Christopher I Amos; Angela Risch; Jenny Chang-Claude; Heinz-Erich Wichmann; Thomas Kneib; Heike Bickeböller; Benjamin Hofner
Journal:  Comput Math Methods Med       Date:  2017-07-13       Impact factor: 2.238

Review 6.  An Update on Statistical Boosting in Biomedicine.

Authors:  Andreas Mayr; Benjamin Hofner; Elisabeth Waldmann; Tobias Hepp; Sebastian Meyer; Olaf Gefeller
Journal:  Comput Math Methods Med       Date:  2017-08-02       Impact factor: 2.238

7.  Probing for Sparse and Fast Variable Selection with Model-Based Boosting.

Authors:  Janek Thomas; Tobias Hepp; Andreas Mayr; Bernd Bischl
Journal:  Comput Math Methods Med       Date:  2017-07-31       Impact factor: 2.238

8.  Identifying genetic determinants of complex phenotypes from whole genome sequence data.

Authors:  George S Long; Mohammed Hussen; Jonathan Dench; Stéphane Aris-Brosou
Journal:  BMC Genomics       Date:  2019-06-10       Impact factor: 3.969

9.  Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selection.

Authors:  Andreas Mayr; Benjamin Hofner; Matthias Schmid
Journal:  BMC Bioinformatics       Date:  2016-07-22       Impact factor: 3.169

10.  Estimating patients' risk for postoperative delirium from preoperative routine data - Trial design of the PRe-Operative prediction of postoperative DElirium by appropriate SCreening (PROPDESC) study - A monocentre prospective observational trial.

Authors:  Jan Menzenbach; Vera Guttenthaler; Andrea Kirfel; Arcangelo Ricchiuto; Claudia Neumann; Linda Adler; Marjetka Kieback; Lisa Velten; Rolf Fimmers; Andreas Mayr; Maria Wittmann
Journal:  Contemp Clin Trials Commun       Date:  2019-12-04
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