Literature DB >> 22332089

The impact of nutrition on differential methylated regions of the genome.

Anne Parle-McDermott1, Mari Ozaki.   

Abstract

Nutrition has always played an important role in health and disease, ranging from common diseases to its likely contribution to the fetal origins of adult disease. However, deciphering the molecular details of this role is much more challenging. The impact of nutrition on the methylome, i.e., DNA methylation, has received particular attention in more recent years. Our understanding of the complexity of the methylome is evolving as efforts to catalog the DNA methylation differences that exist between different tissues and individuals continue. We review selected examples of animal and human studies that provide evidence that, in fact, specific genes and DNA methylation sites are subject to change during development and during a lifetime as a direct response to nutrition. Investigation of the methyl donors folate, choline, and methionine provide the most compelling evidence of a role in mediating DNA methylation changes. Although a number of candidate regions/genes have been identified to date, we are just at the beginning in terms of cataloging so-called nutrient-sensitive methylation variable positions in humans.

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Year:  2011        PMID: 22332089      PMCID: PMC3226384          DOI: 10.3945/an.111.001008

Source DB:  PubMed          Journal:  Adv Nutr        ISSN: 2161-8313            Impact factor:   8.701


  77 in total

1.  Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.

Authors:  Benjamin R Carone; Lucas Fauquier; Naomi Habib; Jeremy M Shea; Caroline E Hart; Ruowang Li; Christoph Bock; Chengjian Li; Hongcang Gu; Phillip D Zamore; Alexander Meissner; Zhiping Weng; Hans A Hofmann; Nir Friedman; Oliver J Rando
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

2.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

3.  Epigenetic alterations in the brains of Fisher 344 rats induced by long-term administration of folate/methyl-deficient diet.

Authors:  Igor P Pogribny; Adam R Karpf; Smitha R James; Stepan Melnyk; Tao Han; Volodymyr P Tryndyak
Journal:  Brain Res       Date:  2008-07-30       Impact factor: 3.252

4.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

5.  Atopy, lung function, and obstructive airways disease after prenatal exposure to famine.

Authors:  C E Lopuhaä; T J Roseboom; C Osmond; D J Barker; A C Ravelli; O P Bleker; J S van der Zee; J H van der Meulen
Journal:  Thorax       Date:  2000-07       Impact factor: 9.139

Review 6.  Aberrant DNA methylation as a cancer-inducing mechanism.

Authors:  Manel Esteller
Journal:  Annu Rev Pharmacol Toxicol       Date:  2005       Impact factor: 13.820

7.  The liver X-receptor gene promoter is hypermethylated in a mouse model of prenatal protein restriction.

Authors:  Esther M E van Straten; Vincent W Bloks; Nicolette C A Huijkman; Julius F W Baller; Hester van Meer; Dieter Lütjohann; Folkert Kuipers; Torsten Plösch
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2009-11-04       Impact factor: 3.619

8.  High fat diet-induced obesity modifies the methylation pattern of leptin promoter in rats.

Authors:  F I Milagro; J Campión; D F García-Díaz; E Goyenechea; L Paternain; J A Martínez
Journal:  J Physiol Biochem       Date:  2009-03       Impact factor: 4.158

9.  Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Authors:  Madeleine P Ball; Jin Billy Li; Yuan Gao; Je-Hyuk Lee; Emily M LeProust; In-Hyun Park; Bin Xie; George Q Daley; George M Church
Journal:  Nat Biotechnol       Date:  2009-03-29       Impact factor: 54.908

10.  Maternal genistein alters coat color and protects Avy mouse offspring from obesity by modifying the fetal epigenome.

Authors:  Dana C Dolinoy; Jennifer R Weidman; Robert A Waterland; Randy L Jirtle
Journal:  Environ Health Perspect       Date:  2006-04       Impact factor: 9.031

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  13 in total

1.  Impact of folic acid intake during pregnancy on genomic imprinting of IGF2/H19 and 1-carbon metabolism.

Authors:  Aggeliki Tserga; Alexandra M Binder; Karin B Michels
Journal:  FASEB J       Date:  2017-08-04       Impact factor: 5.191

2.  Longitudinal effects of developmental bisphenol A and variable diet exposures on epigenetic drift in mice.

Authors:  Joseph Kochmanski; Elizabeth H Marchlewicz; Matthew Savidge; Luke Montrose; Christopher Faulk; Dana C Dolinoy
Journal:  Reprod Toxicol       Date:  2016-08-02       Impact factor: 3.143

3.  DNA methylation patterns of behavior-related gene promoter regions dissect the gray wolf from domestic dog breeds.

Authors:  Zsofia Banlaki; Giulia Cimarelli; Zsofia Viranyi; Eniko Kubinyi; Maria Sasvari-Szekely; Zsolt Ronai
Journal:  Mol Genet Genomics       Date:  2017-03-21       Impact factor: 3.291

4.  Global and gene-specific DNA methylation across multiple tissues in early infancy: implications for children's health research.

Authors:  David A Armstrong; Corina Lesseur; Elisabeth Conradt; Barry M Lester; Carmen J Marsit
Journal:  FASEB J       Date:  2014-01-29       Impact factor: 5.191

Review 5.  Biomarkers of Nutrition for Development-Folate Review.

Authors:  Lynn B Bailey; Patrick J Stover; Helene McNulty; Michael F Fenech; Jesse F Gregory; James L Mills; Christine M Pfeiffer; Zia Fazili; Mindy Zhang; Per M Ueland; Anne M Molloy; Marie A Caudill; Barry Shane; Robert J Berry; Regan L Bailey; Dorothy B Hausman; Ramkripa Raghavan; Daniel J Raiten
Journal:  J Nutr       Date:  2015-06-03       Impact factor: 4.798

6.  Methylation alterations at imprinted genes detected among long-term shiftworkers.

Authors:  Daniel I Jacobs; Johnni Hansen; Alan Fu; Richard G Stevens; Anne Tjonneland; Ulla B Vogel; Tongzhang Zheng; Yong Zhu
Journal:  Environ Mol Mutagen       Date:  2012-11-28       Impact factor: 3.216

7.  Consequences of supplying methyl donors during pregnancy on the methylome of the offspring from lactating and non-lactating dairy cattle.

Authors:  Alex Bach; Anna Aris; Isabel Guasch
Journal:  PLoS One       Date:  2017-12-11       Impact factor: 3.240

8.  Colorectal cancer cells Caco-2 and HCT116 resist epigenetic effects of isothiocyanates and selenium in vitro.

Authors:  Lawrence N Barrera; Ian T Johnson; Yongping Bao; Aedin Cassidy; Nigel J Belshaw
Journal:  Eur J Nutr       Date:  2012-08-26       Impact factor: 5.614

Review 9.  The origins of health and disease: the influence of maternal diseases and lifestyle during gestation.

Authors:  Lucetta Capra; Giovanna Tezza; Federica Mazzei; Attilio L Boner
Journal:  Ital J Pediatr       Date:  2013-01-23       Impact factor: 2.638

Review 10.  What do studies of insect polyphenisms tell us about nutritionally-triggered epigenomic changes and their consequences?

Authors:  Andrew G Cridge; Megan P Leask; Elizabeth J Duncan; Peter K Dearden
Journal:  Nutrients       Date:  2015-03-11       Impact factor: 5.717

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