Literature DB >> 22331649

HCV RNA levels in a multiethnic cohort of injection drug users: human genetic, viral and demographic associations.

Lorenzo Uccellini1, Fan-Chen Tseng, Alessandro Monaco, Fatma M Shebl, Ruth Pfeiffer, Myhanh Dotrang, Dianna Buckett, Michael P Busch, Ena Wang, Brian R Edlin, Francesco M Marincola, Thomas R O'Brien.   

Abstract

UNLABELLED: In patients with chronic hepatitis C, the hepatitis C virus (HCV) RNA level is an important predictor of treatment response. To explore the relationship of HCV RNA with viral and demographic factors, as well as IL28B genotype, we examined viral levels in an ethnically diverse group of injection drug users (IDUs). Between 1998 and 2000, the Urban Health Study (UHS) recruited IDUs from street settings in San Francisco Bay area neighborhoods. Participants who were positive by HCV enzyme immunoassay were tested for HCV viremia by a branched-chain DNA assay. HCV genotype was determined by sequencing the HCV nonstructural 5B protein region. For a subset of participants, IL28B rs12979860 genotype was determined by Taqman. Among 1,701 participants with HCV viremia, median age was 46 years and median duration of injection drug use was 26 years; 56.0% were African American and 34.0% were of European ancestry (non-Hispanic). Human immunodeficiency virus type 1 (HIV-1) prevalence was 13.9%. The overall median HCV RNA level was 6.45 log(10) copies/mL. In unadjusted analyses, higher levels were found with older age, male gender, African-American ancestry, hepatitis B virus infection, HIV-1 infection, and IL28B rs12979860-CC genotype; compared to participants infected with HCV genotype 1, HCV RNA was lower in participants with genotypes 3 or 4. In an adjusted analysis, age, gender, racial ancestry, HIV-1 infection, HCV genotype, and IL28B rs12979860 genotype were all independently associated with HCV RNA.
CONCLUSION: The level of HCV viremia is influenced by a large number of demographic, viral, and human genetic factors.
Copyright © 2012 American Association for the Study of Liver Diseases.

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Year:  2012        PMID: 22331649      PMCID: PMC3369001          DOI: 10.1002/hep.25652

Source DB:  PubMed          Journal:  Hepatology        ISSN: 0270-9139            Impact factor:   17.425


  40 in total

1.  Replicated association between an IL28B gene variant and a sustained response to pegylated interferon and ribavirin.

Authors:  Jeanette J McCarthy; Josephine H Li; Alexander Thompson; Sunil Suchindran; Xiang Qian Lao; Keyur Patel; Hans L Tillmann; Andrew J Muir; John G McHutchison
Journal:  Gastroenterology       Date:  2010-02-19       Impact factor: 22.682

2.  Hepatic ISG expression is associated with genetic variation in interleukin 28B and the outcome of IFN therapy for chronic hepatitis C.

Authors:  Masao Honda; Akito Sakai; Tatsuya Yamashita; Yasunari Nakamoto; Eishiro Mizukoshi; Yoshio Sakai; Taro Yamashita; Mikiko Nakamura; Takayoshi Shirasaki; Katsuhisa Horimoto; Yasuhito Tanaka; Katsushi Tokunaga; Masashi Mizokami; Shuichi Kaneko
Journal:  Gastroenterology       Date:  2010-04-29       Impact factor: 22.682

3.  Interleukin-28B genetic variants and hepatitis virus infection by different viral genotypes.

Authors:  Marco Antonio Montes-Cano; José Raúl García-Lozano; Cristina Abad-Molina; Manuel Romero-Gómez; Natalia Barroso; José Aguilar-Reina; Antonio Núñez-Roldán; María Francisca González-Escribano
Journal:  Hepatology       Date:  2010-07       Impact factor: 17.425

4.  Serum HCV RNA levels assessed by quantitative NASBA: stability of viral load over time, and lack of correlation with liver disease. The Trent HCV Study Group.

Authors:  R C Hollingsworth; P Sillekens; P van Deursen; K R Neal; W L Irving
Journal:  J Hepatol       Date:  1996-09       Impact factor: 25.083

5.  IL28B genotype is associated with differential expression of intrahepatic interferon-stimulated genes in patients with chronic hepatitis C.

Authors:  Thomas J Urban; Alexander J Thompson; Shelton S Bradrick; Jacques Fellay; Detlef Schuppan; Kenneth D Cronin; Linda Hong; Alexander McKenzie; Keyur Patel; Kevin V Shianna; John G McHutchison; David B Goldstein; Nezam Afdhal
Journal:  Hepatology       Date:  2010-10-07       Impact factor: 17.425

6.  Hepatitis C treatment among racial and ethnic groups in the IDEAL trial.

Authors:  A J Muir; K-Q Hu; S C Gordon; K Koury; N Boparai; S Noviello; J K Albrecht; M S Sulkowski; J McCone
Journal:  J Viral Hepat       Date:  2010-11-25       Impact factor: 3.728

7.  Potential role for interleukin-28B genotype in treatment decision-making in recent hepatitis C virus infection.

Authors:  Jason Grebely; Kathy Petoumenos; Margaret Hellard; Gail V Matthews; Vijayaprakash Suppiah; Tanya Applegate; Barbara Yeung; Phillipa Marks; William Rawlinson; Andrew R Lloyd; David Booth; John M Kaldor; Jacob George; Gregory J Dore
Journal:  Hepatology       Date:  2010-10       Impact factor: 17.425

8.  A polymorphism near IL28B is associated with spontaneous clearance of acute hepatitis C virus and jaundice.

Authors:  Hans L Tillmann; Alex J Thompson; Keyur Patel; Manfred Wiese; Hannelore Tenckhoff; Hans D Nischalke; Yuliya Lokhnygina; Ulrike Kullig; Uwe Göbel; Emanuela Capka; Johannes Wiegand; Ingolf Schiefke; Wolfgang Güthoff; Kurt Grüngreiff; Ingrid König; Ulrich Spengler; Jeanette McCarthy; Kevin V Shianna; David B Goldstein; John G McHutchison; Jörg Timm; Jacob Nattermann
Journal:  Gastroenterology       Date:  2010-07-14       Impact factor: 22.682

9.  Acute hepatitis C virus infection in young adult injection drug users: a prospective study of incident infection, resolution, and reinfection.

Authors:  Kimberly Page; Judith A Hahn; Jennifer Evans; Stephen Shiboski; Paula Lum; Eric Delwart; Leslie Tobler; William Andrews; Lia Avanesyan; Stewart Cooper; Michael P Busch
Journal:  J Infect Dis       Date:  2009-10-15       Impact factor: 5.226

10.  Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study.

Authors:  Andri Rauch; Zoltán Kutalik; Patrick Descombes; Tao Cai; Julia Di Iulio; Tobias Mueller; Murielle Bochud; Manuel Battegay; Enos Bernasconi; Jan Borovicka; Sara Colombo; Andreas Cerny; Jean-François Dufour; Hansjakob Furrer; Huldrych F Günthard; Markus Heim; Bernard Hirschel; Raffaele Malinverni; Darius Moradpour; Beat Müllhaupt; Andrea Witteck; Jacques S Beckmann; Thomas Berg; Sven Bergmann; Francesco Negro; Amalio Telenti; Pierre-Yves Bochud
Journal:  Gastroenterology       Date:  2010-01-11       Impact factor: 22.682

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  18 in total

1.  Interferon lambda 3 genotype predicts hepatitis C virus RNA levels in early acute infection among people who inject drugs: the InC(3) study.

Authors:  Behzad Hajarizadeh; Bart Grady; Kimberly Page; Arthur Y Kim; Barbara H McGovern; Andrea L Cox; Thomas M Rice; Rachel Sacks-Davis; Julie Bruneau; Meghan Morris; Janaki Amin; Janke Schinkel; Tanya Applegate; Lisa Maher; Margaret Hellard; Andrew R Lloyd; Maria Prins; Ronald B Geskus; Gregory J Dore; Jason Grebely
Journal:  J Clin Virol       Date:  2014-09-08       Impact factor: 3.168

2.  Factors associated with hepatitis C virus RNA levels in early chronic infection: the InC3 study.

Authors:  B Hajarizadeh; B Grady; K Page; A Y Kim; B H McGovern; A L Cox; T M Rice; R Sacks-Davis; J Bruneau; M Morris; J Amin; J Schinkel; T Applegate; L Maher; M Hellard; A R Lloyd; M Prins; R B Geskus; G J Dore; J Grebely
Journal:  J Viral Hepat       Date:  2015-01-08       Impact factor: 3.728

3.  Influence of IFNL3 and HLA-DPB1 genotype on postpartum control of hepatitis C virus replication and T-cell recovery.

Authors:  Jonathan R Honegger; Dana Tedesco; Jennifer A Kohout; Mona R Prasad; Aryn A Price; Tera Lindquist; Samantha Ohmer; Melissa Moore-Clingenpeel; Arash Grakoui; Christopher M Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

4.  A variant upstream of IFNL3 (IL28B) creating a new interferon gene IFNL4 is associated with impaired clearance of hepatitis C virus.

Authors:  Ludmila Prokunina-Olsson; Brian Muchmore; Wei Tang; Ruth M Pfeiffer; Heiyoung Park; Harold Dickensheets; Dianna Hergott; Patricia Porter-Gill; Adam Mumy; Indu Kohaar; Sabrina Chen; Nathan Brand; McAnthony Tarway; Luyang Liu; Faruk Sheikh; Jacquie Astemborski; Herbert L Bonkovsky; Brian R Edlin; Charles D Howell; Timothy R Morgan; David L Thomas; Barbara Rehermann; Raymond P Donnelly; Thomas R O'Brien
Journal:  Nat Genet       Date:  2013-01-06       Impact factor: 38.330

5.  Association of the IFNL4-ΔG Allele With Impaired Spontaneous Clearance of Hepatitis C Virus.

Authors:  Peter V Aka; Mark H Kuniholm; Ruth M Pfeiffer; Alan S Wang; Wei Tang; Sabrina Chen; Jacquie Astemborski; Michael Plankey; Maria C Villacres; Marion G Peters; Seema Desai; Eric C Seaberg; Brian R Edlin; Howard D Strickler; David L Thomas; Ludmila Prokunina-Olsson; Gerald B Sharp; Thomas R O'Brien
Journal:  J Infect Dis       Date:  2013-08-15       Impact factor: 5.226

6.  Interleukin gene polymorphisms and susceptibility to HIV-1 infection: a meta-analysis.

Authors:  Chrissa G Tsiara; Georgios K Nikolopoulos; Niki L Dimou; Katerina G Pantavou; Pantelis G Bagos; Benedicta Mensah; Michael Talias; Georgia G Braliou; Dimitra Paraskeva; Stefanos Bonovas; Angelos Hatzakis
Journal:  J Genet       Date:  2018-03       Impact factor: 1.166

Review 7.  The IFN-λ4 Conundrum: When a Good Interferon Goes Bad.

Authors:  Olusegun O Onabajo; Brian Muchmore; Ludmila Prokunina-Olsson
Journal:  J Interferon Cytokine Res       Date:  2019-06-26       Impact factor: 2.607

8.  Disease progression during advanced fibrosis: IL28B genotype or HCV RNA levels?

Authors:  Jason Grebely; Bart Grady; Behzad Hajarizadeh; Kimberly Page; Gregory J Dore
Journal:  Hepatology       Date:  2014-02-18       Impact factor: 17.425

9.  IFN-λ4 Attenuates Antiviral Responses by Enhancing Negative Regulation of IFN Signaling.

Authors:  Adeola A Obajemu; Nina Rao; Kari A Dilley; Joselin M Vargas; Faruk Sheikh; Raymond P Donnelly; Reed S Shabman; Eric G Meissner; Ludmila Prokunina-Olsson; Olusegun O Onabajo
Journal:  J Immunol       Date:  2017-10-25       Impact factor: 5.422

10.  Correlation of viral loads with HCV genotypes: higher levels of virus were revealed among blood donors infected with 6a strains.

Authors:  Xia Rong; Ling Lu; Junzhi Wang; Huaping Xiong; Jieting Huang; Jinyan Chen; Ke Huang; Ru Xu; Min Wang; Xuemei Zhang; Tai Guo; Yueyue Liu; Guoquan Gao; Yongshui Fu; Kenrad E Nelson
Journal:  PLoS One       Date:  2012-12-17       Impact factor: 3.240

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