Literature DB >> 22328764

Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T.

Vanessa Pittet1, Teju Abegunde, Travis Marfleet, Monique Haakensen, Kendra Morrow, Teenus Jayaprakash, Kristen Schroeder, Brett Trost, Sydney Byrns, Jordyn Bergsveinson, Anthony Kusalik, Barry Ziola.   

Abstract

Pediococcus claussenii is a common brewery contaminant. We have sequenced the chromosome and plasmids of the type strain P. claussenii ATCC BAA-344. A ropy variant was chosen for sequencing to obtain genetic information related to growth in beer, as well as exopolysaccharide and possibly biofilm formation by this organism.

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Year:  2012        PMID： 22328764      PMCID： PMC3294761          DOI： 10.1128/JB.06759-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Hop resistance in the beer spoilage bacterium Lactobacillus brevis is mediated by the ATP-binding cassette multidrug transporter HorA.

Authors:  K Sakamoto; A Margolles; H W van Veen; W N Konings
Journal:  J Bacteriol       Date:  2001-09       Impact factor: 3.490

6.  The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098.

Authors:  Filipe Santos; Jose L Vera; René van der Heijden; Graciela Valdez; Willem M de Vos; Fernando Sesma; Jeroen Hugenholtz
Journal:  Microbiology       Date:  2008-01       Impact factor: 2.777

7.  Hawkeye: an interactive visual analytics tool for genome assemblies.

Authors:  Michael C Schatz; Adam M Phillippy; Ben Shneiderman; Steven L Salzberg
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

9.  CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Authors:  Ibtissem Grissa; Gilles Vergnaud; Christine Pourcel
Journal:  Nucleic Acids Res       Date:  2007-05-30       Impact factor: 16.971

10.  Genome assembly forensics: finding the elusive mis-assembly.

Authors:  Adam M Phillippy; Michael C Schatz; Mihai Pop
Journal:  Genome Biol       Date:  2008-03-14       Impact factor: 13.583
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  11 in total

1.  Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment.

Authors:  Isabel Snauwaert; Pieter Stragier; Luc De Vuyst; Peter Vandamme
Journal:  BMC Genomics       Date:  2015-04-03       Impact factor: 3.969

Review 2.  Plasmids from Food Lactic Acid Bacteria: Diversity, Similarity, and New Developments.

Authors:  Yanhua Cui; Tong Hu; Xiaojun Qu; Lanwei Zhang; Zhongqing Ding; Aijun Dong
Journal:  Int J Mol Sci       Date:  2015-06-10       Impact factor: 5.923

3.  Transcriptome sequence and plasmid copy number analysis of the brewery isolate Pediococcus claussenii ATCC BAA-344 T during growth in beer.

Authors:  Vanessa Pittet; Trevor G Phister; Barry Ziola
Journal:  PLoS One       Date:  2013-09-06       Impact factor: 3.240

Review 4.  Functional genomics of lactic acid bacteria: from food to health.

Authors:  François P Douillard; Willem M de Vos
Journal:  Microb Cell Fact       Date:  2014-08-29       Impact factor: 5.328

5.  Multiple Genome Sequences of Important Beer-Spoiling Lactic Acid Bacteria.

Authors:  Andreas J Geissler; Jürgen Behr; Rudi F Vogel
Journal:  Genome Announc       Date:  2016-10-06

6.  Characterization of Pediococcus ethanolidurans CUPV141: A β-D-glucan- and Heteropolysaccharide-Producing Bacterium.

Authors:  María G Llamas-Arriba; Adrián Pérez-Ramos; Ana I Puertas; Paloma López; María T Dueñas; Alicia Prieto
Journal:  Front Microbiol       Date:  2018-09-04       Impact factor: 5.640

7.  Genome Analysis of Lactobacillus plantarum LL441 and Genetic Characterisation of the Locus for the Lantibiotic Plantaricin C.

Authors:  Ana B Flórez; Baltasar Mayo
Journal:  Front Microbiol       Date:  2018-08-17       Impact factor: 5.640

8.  Draft Genome Sequence of Pediococcus lolii NGRI 0510Q(T) Isolated from Ryegrass Silage.

Authors:  Katsumi Doi; Kazuki Mori; Kosuke Tashiro; Yasuhiro Fujino; Yuko Nagayoshi; Yoshiharu Hayashi; Satoru Kuhara; Toshihisa Ohshima
Journal:  Genome Announc       Date:  2013-02-07

9.  The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr.

Authors:  Jürgen Behr; Andreas J Geissler; Jonas Schmid; Anja Zehe; Rudi F Vogel
Journal:  PLoS One       Date:  2016-03-30       Impact factor: 3.240

10.  β-Glucan Production by Levilactobacillus brevis and Pediococcus claussenii for In Situ Enriched Rye and Wheat Sourdough Breads.

Authors:  Julia A Bockwoldt; Johanna Fellermeier; Emma Steffens; Rudi F Vogel; Matthias A Ehrmann
Journal:  Foods       Date:  2021-03-06
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