Literature DB >> 22328763

Genome sequence of Pseudomonas chlororaphis GP72, a root-colonizing biocontrol strain.

Xuemei Shen1, Mingmin Chen, Hongbo Hu, Wei Wang, Huasong Peng, Ping Xu, Xuehong Zhang.   

Abstract

Pseudomonas chlororaphis GP72 is a root-colonizing biocontrol strain isolated from a green pepper rhizosphere. It can produce several secondary metabolites to suppress phytopathogens. Here we present a 6.6-Mb assembly of its genome, which is the first genome sequence of the P. chlororaphis group and may provide insights into its antifungal activities.

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Year:  2012        PMID： 22328763      PMCID： PMC3294805          DOI： 10.1128/JB.06713-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  22 in total

1.  Genetic diversity of phenazine- and pyoluteorin-producing pseudomonads isolated from green pepper rhizosphere.

Authors:  Haiming Liu; Dexian Dong; Huasong Peng; Xuehong Zhang; Yuquan Xu
Journal:  Arch Microbiol       Date:  2006-01-03       Impact factor: 2.552

2.  WebACT--an online companion for the Artemis Comparison Tool.

Authors:  J C Abbott; D M Aanensen; K Rutherford; S Butcher; B G Spratt
Journal:  Bioinformatics       Date:  2005-08-02       Impact factor: 6.937

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici.

Authors:  L S Thomashow; D M Weller
Journal:  J Bacteriol       Date:  1988-08       Impact factor: 3.490

Review 6.  Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation.

Authors:  Dmitri V Mavrodi; Wulf Blankenfeldt; Linda S Thomashow
Journal:  Annu Rev Phytopathol       Date:  2006       Impact factor: 13.078

7.  Characterization of a phenazine-producing strain Pseudomonas chlororaphis GP72 with broad-spectrum antifungal activity from green pepper rhizosphere.

Authors:  Haiming Liu; Yanjing He; Haixia Jiang; Huasong Peng; Xianqing Huang; Xuehong Zhang; Linda S Thomashow; Yuquan Xu
Journal:  Curr Microbiol       Date:  2007-03-02       Impact factor: 2.188

8.  Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0.

Authors:  J Laville; C Blumer; C Von Schroetter; V Gaia; G Défago; C Keel; D Haas
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

9.  Characterization of pyoverdine and achromobactin in Pseudomonas syringae pv. phaseolicola 1448a.

Authors:  Jeremy G Owen; David F Ackerley
Journal:  BMC Microbiol       Date:  2011-10-03       Impact factor: 3.605

10.  Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Authors:  Ian T Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T DeBoy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Stephen A Sullivan; Mary J Rosovitz; Michelle L Gwinn; Liwei Zhou; Davd J Schneider; Samuel W Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Journal:  Nat Biotechnol       Date:  2005-06-26       Impact factor: 54.908
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  15 in total

1.  Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain.

Authors:  Fabián Moreno-Avitia; José Utrilla; Francisco Bolívar; Juan Nogales; Adelfo Escalante
Journal:  Appl Microbiol Biotechnol       Date:  2020-09-28       Impact factor: 4.813

2.  Comparative genomic analysis and phenazine production of Pseudomonas chlororaphis, a plant growth-promoting rhizobacterium.

Authors:  Yawen Chen; Xuemei Shen; Huasong Peng; Hongbo Hu; Wei Wang; Xuehong Zhang
Journal:  Genom Data       Date:  2015-01-22

3.  Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus.

Authors:  Beat Ruffner; Maria Péchy-Tarr; Monica Höfte; Guido Bloemberg; Jürg Grunder; Christoph Keel; Monika Maurhofer
Journal:  BMC Genomics       Date:  2015-08-16       Impact factor: 3.969

4.  Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB-St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum.

Authors:  Samina Mehnaz; Judith S Bauer; Harald Gross
Journal:  Genome Announc       Date:  2014-01-23

5.  Draft Genome Sequence of Pseudomonas chlororaphis YL-1, a Biocontrol Strain Suppressing Plant Microbial Pathogens.

Authors:  Youzhou Liu; Shi-En Lu; Sonya M Baird; Junqing Qiao; Yan Du
Journal:  Genome Announc       Date:  2014-01-30

6.  Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas.

Authors:  Xuemei Shen; Hongbo Hu; Huasong Peng; Wei Wang; Xuehong Zhang
Journal:  BMC Genomics       Date:  2013-04-22       Impact factor: 3.969

7.  Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Authors:  Joyce E Loper; Karl A Hassan; Dmitri V Mavrodi; Edward W Davis; Chee Kent Lim; Brenda T Shaffer; Liam D H Elbourne; Virginia O Stockwell; Sierra L Hartney; Katy Breakwell; Marcella D Henkels; Sasha G Tetu; Lorena I Rangel; Teresa A Kidarsa; Neil L Wilson; Judith E van de Mortel; Chunxu Song; Rachel Blumhagen; Diana Radune; Jessica B Hostetler; Lauren M Brinkac; A Scott Durkin; Daniel A Kluepfel; W Patrick Wechter; Anne J Anderson; Young Cheol Kim; Leland S Pierson; Elizabeth A Pierson; Steven E Lindow; Donald Y Kobayashi; Jos M Raaijmakers; David M Weller; Linda S Thomashow; Andrew E Allen; Ian T Paulsen
Journal:  PLoS Genet       Date:  2012-07-05       Impact factor: 5.917

8.  Identification of the Lomofungin Biosynthesis Gene Cluster and Associated Flavin-Dependent Monooxygenase Gene in Streptomyces lomondensis S015.

Authors:  Chunxiao Zhang; Chaolan Sheng; Wei Wang; Hongbo Hu; Huasong Peng; Xuehong Zhang
Journal:  PLoS One       Date:  2015-08-25       Impact factor: 3.240

9.  Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato.

Authors:  Peng Deng; Xiaoqiang Wang; Sonya M Baird; Shi-En Lu
Journal:  Stand Genomic Sci       Date:  2015-12-01

10.  The requirement for the LysR-type regulator PtrA for Pseudomonas chlororaphis PA23 biocontrol revealed through proteomic and phenotypic analysis.

Authors:  Natasha Klaponski; Carrie Selin; Kelly Duke; Vic Spicer; Dilantha W G Fernando; Mark F Belmonte; Teresa R de Kievit
Journal:  BMC Microbiol       Date:  2014-04-17       Impact factor: 3.605
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