Literature DB >> 22328754

Complete genome sequence of the denitrifying and N2O-reducing bacterium Azoarcus sp. strain KH32C.

Tomoyasu Nishizawa1, Kanako Tago, Kenshiro Oshima, Masahira Hattori, Satoshi Ishii, Shigeto Otsuka, Keishi Senoo.   

Abstract

We report the finished and annotated genome sequence of a denitrifying and N(2)O-reducing betaproteobacterium, Azoarcus sp. strain KH32C. The genome is composed of one chromosome and one megaplasmid and contains genes for plant-microbe interactions and the gene clusters for aromatic-compound degradations.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22328754      PMCID： PMC3294784          DOI： 10.1128/JB.06618-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

2.  Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields.

Authors:  Kanako Tago; Satoshi Ishii; Tomoyasu Nishizawa; Shigeto Otsuka; Keishi Senoo
Journal:  Microbes Environ       Date:  2011       Impact factor: 2.912

3.  Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.

Authors:  Andrea Krause; Adarsh Ramakumar; Daniela Bartels; Federico Battistoni; Thomas Bekel; Jens Boch; Melanie Böhm; Frauke Friedrich; Thomas Hurek; Lutz Krause; Burkhard Linke; Alice C McHardy; Abhijit Sarkar; Susanne Schneiker; Arshad Ali Syed; Rudolf Thauer; Frank-Jörg Vorhölter; Stefan Weidner; Alfred Pühler; Barbara Reinhold-Hurek; Olaf Kaiser; Alexander Goesmann
Journal:  Nat Biotechnol       Date:  2006-10-22       Impact factor: 54.908

4.  Sinorhizobium fredii HH103 mutants affected in capsular polysaccharide (KPS) are impaired for nodulation with soybean and Cajanus cajan.

Authors:  Maribel Parada; José M Vinardell; Francisco J Ollero; Angeles Hidalgo; Rocío Gutiérrez; Ana M Buendía-Clavería; Wang Lei; Isabel Margaret; Francisco J López-Baena; Antonio M Gil-Serrano; Miguel A Rodríguez-Carvajal; Javier Moreno; José E Ruiz-Sainz
Journal:  Mol Plant Microbe Interact       Date:  2006-01       Impact factor: 4.171

5.  The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

Authors:  Ralf Rabus; Michael Kube; Johann Heider; Alfred Beck; Katja Heitmann; Friedrich Widdel; Richard Reinhardt
Journal:  Arch Microbiol       Date:  2004-11-13       Impact factor: 2.552

6.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

7.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458

9.  Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.

Authors:  Kenshiro Oshima; Hidehiro Toh; Yoshitoshi Ogura; Hiroyuki Sasamoto; Hidetoshi Morita; Sang-Hee Park; Tadasuke Ooka; Sunao Iyoda; Todd D Taylor; Tetsuya Hayashi; Kikuji Itoh; Masahira Hattori
Journal:  DNA Res       Date:  2008-10-17       Impact factor: 4.458

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  10 in total
  3 in total

1.  In situ electrosynthetic bacterial growth using electricity generated by a deep-sea hydrothermal vent.

Authors:  Masahiro Yamamoto; Yoshihiro Takaki; Hiroyuki Kashima; Miwako Tsuda; Akiko Tanizaki; Ryuhei Nakamura; Ken Takai
Journal:  ISME J       Date:  2022-09-23       Impact factor: 11.217

2.  Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01(T).

Authors:  Madan Junghare; Yogita Patil; Bernhard Schink
Journal:  Stand Genomic Sci       Date:  2015-10-29

3.  Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera.

Authors:  Roberto Tadeu Raittz; Camilla Reginatto De Pierri; Marta Maluk; Marcelo Bueno Batista; Manuel Carmona; Madan Junghare; Helisson Faoro; Leonardo M Cruz; Federico Battistoni; Emanuel de Souza; Fábio de Oliveira Pedrosa; Wen-Ming Chen; Philip S Poole; Ray A Dixon; Euan K James
Journal:  Genes (Basel)       Date:  2021-01-07       Impact factor: 4.141
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.