Literature DB >> 22328435

In silico design of functional DNA constructs.

Alan Villalobos1, Mark Welch, Jeremy Minshull.   

Abstract

The promise of synthetic biology lies in the creation of novel function from the proper combination of genetic elements. De novo gene synthesis has become a cost-effective method for building virtually any conceptualized genetic construct, removing the constraints of extant sequences, and greatly facilitating study of the relationships between gene sequence and function. With the rapid increase in the number and variety of characterized and cataloged genetic elements, tools that facilitate assembly of such parts into functional constructs (genes, vectors, circuits, etc.) are essential. The Gene Designer software allows scientists and engineers to readily manage and recombine genetic elements into novel assemblies. It also provides tools for the simulation of molecular cloning schemes as well as the engineering and optimization of protein-coding sequences. Together, the functions in Gene Designer provide a complete capability to design functional genetic constructs.

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Year:  2012        PMID: 22328435     DOI: 10.1007/978-1-61779-564-0_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Modified 'one amino acid-one codon' engineering of high GC content TaqII-coding gene from thermophilic Thermus aquaticus results in radical expression increase.

Authors:  Agnieszka Zylicz-Stachula; Olga Zolnierkiewicz; Katarzyna Sliwinska; Joanna Jezewska-Frackowiak; Piotr M Skowron
Journal:  Microb Cell Fact       Date:  2014-01-11       Impact factor: 5.328

2.  Design, Construction and Cloning of Truncated ORF2 and tPAsp-PADRE-Truncated ORF2 Gene Cassette From Hepatitis E Virus in the pVAX1 Expression Vector.

Authors:  Fatemeh Farshadpour; Manoochehr Makvandi; Reza Taherkhani
Journal:  Jundishapur J Microbiol       Date:  2015-12-13       Impact factor: 0.747

3.  Thermostable proteins bioprocesses: The activity of restriction endonuclease-methyltransferase from Thermus thermophilus (RM.TthHB27I) cloned in Escherichia coli is critically affected by the codon composition of the synthetic gene.

Authors:  Daria Krefft; Aliaksei Papkov; Agnieszka Zylicz-Stachula; Piotr M Skowron
Journal:  PLoS One       Date:  2017-10-17       Impact factor: 3.240

  3 in total

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