Literature DB >> 22328084

Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function.

Noboru J Sakabe1, Ivy Aneas, Tao Shen, Leila Shokri, Soo-Young Park, Martha L Bulyk, Sylvia M Evans, Marcelo A Nobrega.   

Abstract

The ongoing requirement in adult heart for transcription factors with key roles in cardiac development is not well understood. We recently demonstrated that TBX20, a transcriptional regulator required for cardiac development, has key roles in the maintenance of functional and structural phenotypes in adult mouse heart. Conditional ablation of Tbx20 in adult cardiomyocytes leads to a rapid onset and progression of heart failure, with prominent conduction and contractility phenotypes that lead to death. Here we describe a more comprehensive molecular characterization of the functions of TBX20 in adult mouse heart. Coupling genome-wide chromatin immunoprecipitation and transcriptome analyses (RNA-Seq), we identified a subset of genes that change expression in Tbx20 adult cardiomyocyte-specific knockout hearts which are direct downstream targets of TBX20. This analysis revealed a dual role for TBX20 as both a transcriptional activator and a repressor, and that each of these functions regulates genes with very specialized and distinct molecular roles. We also show how TBX20 binds to its targets genome-wide in a context-dependent manner, using various cohorts of co-factors to either promote or repress distinct genetic programs within adult heart. Our integrative approach has uncovered several novel aspects of TBX20 and T-box protein function within adult heart. Sequencing data accession number (http://www.ncbi.nlm.nih.gov/geo): GSE30943.

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Year:  2012        PMID: 22328084      PMCID: PMC3335310          DOI: 10.1093/hmg/dds034

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  47 in total

1.  The human genome browser at UCSC.

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Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

2.  Cardiac T-box factor Tbx20 directly interacts with Nkx2-5, GATA4, and GATA5 in regulation of gene expression in the developing heart.

Authors:  Fiona A Stennard; Mauro W Costa; David A Elliott; Scott Rankin; Saskia J P Haast; Donna Lai; Lachlan P A McDonald; Karen Niederreither; Pascal Dolle; Benoit G Bruneau; Aaron M Zorn; Richard P Harvey
Journal:  Dev Biol       Date:  2003-10-15       Impact factor: 3.582

3.  Conformational stability and DNA binding specificity of the cardiac T-box transcription factor Tbx20.

Authors:  Ingrid Macindoe; Laura Glockner; Paul Vukasin; Fiona A Stennard; Mauro W Costa; Richard P Harvey; Joel P Mackay; Margaret Sunde
Journal:  J Mol Biol       Date:  2009-05-03       Impact factor: 5.469

4.  Coordinated but physically separable interaction with H3K27-demethylase and H3K4-methyltransferase activities are required for T-box protein-mediated activation of developmental gene expression.

Authors:  Sara A Miller; Albert C Huang; Michael M Miazgowicz; Margaret M Brassil; Amy S Weinmann
Journal:  Genes Dev       Date:  2008-11-01       Impact factor: 11.361

5.  Tbx20 dose-dependently regulates transcription factor networks required for mouse heart and motoneuron development.

Authors:  Jun K Takeuchi; Maria Mileikovskaia; Kazuko Koshiba-Takeuchi; Analeah B Heidt; Alessandro D Mori; Eric P Arruda; Marina Gertsenstein; Romain Georges; Lorinda Davidson; Rong Mo; Chi-Chung Hui; R Mark Henkelman; Mona Nemer; Brian L Black; Andras Nagy; Benoit G Bruneau
Journal:  Development       Date:  2005-04-20       Impact factor: 6.868

6.  Tbx20 is essential for cardiac chamber differentiation and repression of Tbx2.

Authors:  Manvendra K Singh; Vincent M Christoffels; José M Dias; Mark-Oliver Trowe; Marianne Petry; Karin Schuster-Gossler; Antje Bürger; Johan Ericson; Andreas Kispert
Journal:  Development       Date:  2005-05-18       Impact factor: 6.868

7.  The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes.

Authors:  C J Schoenherr; D J Anderson
Journal:  Science       Date:  1995-03-03       Impact factor: 47.728

8.  Nkx2-5 pathways and congenital heart disease; loss of ventricular myocyte lineage specification leads to progressive cardiomyopathy and complete heart block.

Authors:  Mohammad Pashmforoush; Jonathan T Lu; Hanying Chen; Tara St Amand; Richard Kondo; Sylvain Pradervand; Sylvia M Evans; Bob Clark; James R Feramisco; Wayne Giles; Siew Yen Ho; D Woodrow Benson; Michael Silberbach; Weinian Shou; Kenneth R Chien
Journal:  Cell       Date:  2004-04-30       Impact factor: 41.582

9.  Differential expression analysis for sequence count data.

Authors:  Simon Anders; Wolfgang Huber
Journal:  Genome Biol       Date:  2010-10-27       Impact factor: 13.583

10.  UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.

Authors:  Daniel E Newburger; Martha L Bulyk
Journal:  Nucleic Acids Res       Date:  2008-10-08       Impact factor: 16.971

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  40 in total

1.  A Gro/TLE-NuRD corepressor complex facilitates Tbx20-dependent transcriptional repression.

Authors:  Erin Kaltenbrun; Todd M Greco; Christopher E Slagle; Leslie M Kennedy; Tuo Li; Ileana M Cristea; Frank L Conlon
Journal:  J Proteome Res       Date:  2013-10-03       Impact factor: 4.466

Review 2.  Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution.

Authors:  Noboru Jo Sakabe; Marcelo A Nobrega
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

3.  Tbx20 controls the expression of the KCNH2 gene and of hERG channels.

Authors:  Ricardo Caballero; Raquel G Utrilla; Irene Amorós; Marcos Matamoros; Marta Pérez-Hernández; David Tinaquero; Silvia Alfayate; Paloma Nieto-Marín; Guadalupe Guerrero-Serna; Qing-Hua Liu; Roberto Ramos-Mondragón; Daniela Ponce-Balbuena; Todd Herron; Katherine F Campbell; David Filgueiras-Rama; Rafael Peinado; José L López-Sendón; José Jalife; Eva Delpón; Juan Tamargo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-03       Impact factor: 11.205

4.  Right ventricular long noncoding RNA expression in human heart failure.

Authors:  Thomas G Di Salvo; Yan Guo; Yan Ru Su; Travis Clark; Evan Brittain; Tarek Absi; Simon Maltais; Anna Hemnes
Journal:  Pulm Circ       Date:  2015-03       Impact factor: 3.017

5.  Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis.

Authors:  Luis Luna-Zurita; Christian U Stirnimann; Sebastian Glatt; Bogac L Kaynak; Sean Thomas; Florence Baudin; Md Abul Hassan Samee; Daniel He; Eric M Small; Maria Mileikovsky; Andras Nagy; Alisha K Holloway; Katherine S Pollard; Christoph W Müller; Benoit G Bruneau
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

Review 6.  Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases.

Authors:  Jared M Churko; Gary L Mantalas; Michael P Snyder; Joseph C Wu
Journal:  Circ Res       Date:  2013-06-07       Impact factor: 17.367

7.  Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development.

Authors:  Gregory A Cary; Alys M Cheatle Jarvela; Rene D Francolini; Veronica F Hinman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-06       Impact factor: 11.205

Review 8.  TBX5: A Key Regulator of Heart Development.

Authors:  J D Steimle; I P Moskowitz
Journal:  Curr Top Dev Biol       Date:  2016-09-28       Impact factor: 4.897

9.  Probing chromatin landscape reveals roles of endocardial TBX20 in septation.

Authors:  Cornelis J Boogerd; Ivy Aneas; Noboru Sakabe; Ralph J Dirschinger; Quen J Cheng; Bin Zhou; Ju Chen; Marcelo A Nobrega; Sylvia M Evans
Journal:  J Clin Invest       Date:  2016-06-27       Impact factor: 14.808

10.  Dual specificity phosphatase 4 mediates cardiomyopathy caused by lamin A/C (LMNA) gene mutation.

Authors:  Jason C Choi; Wei Wu; Antoine Muchir; Shinichi Iwata; Shunichi Homma; Howard J Worman
Journal:  J Biol Chem       Date:  2012-10-09       Impact factor: 5.157

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