Literature DB >> 22325363

Activity-based protein profiling: an enabling technology in chemical biology research.

Nan Li1, Herman S Overkleeft, Bogdan I Florea.   

Abstract

Activity-based protein profiling (ABPP) is one of the main driving forces in chemical biology and one of the most visible areas where organic chemistry contributes to chemical biology research. In recent years, ABPP research has gradually made the transfer from the relatively easy target enzymes (for instance serine hydrolases, cysteine and threonine proteases) toward targeting enzymes that are intrinsically more difficult to address. These include less abundant enzymes, enzymes that do not employ a nucleophilic amino acid residue in their active site and enzymes more particular with respect to their substrate. At the same time, ABPP has started to make a tangible impact on clinical research.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22325363     DOI: 10.1016/j.cbpa.2012.01.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  17 in total

1.  Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP).

Authors:  Hongyan Ma; Daniel G Delafield; Zhe Wang; Jianlan You; Si Wu
Journal:  J Am Soc Mass Spectrom       Date:  2017-01-12       Impact factor: 3.109

2.  Relative quantification of proteasome activity by activity-based protein profiling and LC-MS/MS.

Authors:  Nan Li; Chi-Lin Kuo; Guillem Paniagua; Hans van den Elst; Martijn Verdoes; Lianne I Willems; Wouter A van der Linden; Mark Ruben; Eric van Genderen; Jacob Gubbens; Gilles P van Wezel; Herman S Overkleeft; Bogdan I Florea
Journal:  Nat Protoc       Date:  2013-05-23       Impact factor: 13.491

Review 3.  Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.

Authors:  M Sloan Siegrist; Benjamin M Swarts; Douglas M Fox; Shion An Lim; Carolyn R Bertozzi
Journal:  FEMS Microbiol Rev       Date:  2015-01-23       Impact factor: 16.408

4.  Organelle-specific activity-based protein profiling in living cells.

Authors:  Susan D Wiedner; Lindsey N Anderson; Natalie C Sadler; William B Chrisler; Vamsi K Kodali; Richard D Smith; Aaron T Wright
Journal:  Angew Chem Int Ed Engl       Date:  2014-02-06       Impact factor: 15.336

5.  Targeting lipid esterases in mycobacteria grown under different physiological conditions using activity-based profiling with tetrahydrolipstatin (THL).

Authors:  Madhu Sudhan Ravindran; Srinivasa P S Rao; Xiamin Cheng; Ankit Shukla; Amaury Cazenave-Gassiot; Shao Q Yao; Markus R Wenk
Journal:  Mol Cell Proteomics       Date:  2013-12-17       Impact factor: 5.911

6.  Suite of activity-based probes for cellulose-degrading enzymes.

Authors:  Lacie M Chauvigné-Hines; Lindsey N Anderson; Holly M Weaver; Joseph N Brown; Phillip K Koech; Carrie D Nicora; Beth A Hofstad; Richard D Smith; Michael J Wilkins; Stephen J Callister; Aaron T Wright
Journal:  J Am Chem Soc       Date:  2012-12-06       Impact factor: 15.419

7.  Activity-based protein profiling reveals mitochondrial oxidative enzyme impairment and restoration in diet-induced obese mice.

Authors:  Natalie C Sadler; Thomas E Angel; Michael P Lewis; Leeanna M Pederson; Lacie M Chauvigné-Hines; Susan D Wiedner; Erika M Zink; Richard D Smith; Aaron T Wright
Journal:  PLoS One       Date:  2012-10-24       Impact factor: 3.240

8.  Targets Fishing and Identification of Calenduloside E as Hsp90AB1: Design, Synthesis, and Evaluation of Clickable Activity-Based Probe.

Authors:  Shan Wang; Yu Tian; Jing-Yi Zhang; Hui-Bo Xu; Ping Zhou; Min Wang; Sen-Bao Lu; Yun Luo; Min Wang; Gui-Bo Sun; Xu-Dong Xu; Xiao-Bo Sun
Journal:  Front Pharmacol       Date:  2018-05-23       Impact factor: 5.810

Review 9.  Advanced Activity-Based Protein Profiling Application Strategies for Drug Development.

Authors:  Shan Wang; Yu Tian; Min Wang; Min Wang; Gui-Bo Sun; Xiao-Bo Sun
Journal:  Front Pharmacol       Date:  2018-04-09       Impact factor: 5.810

10.  A novel color change mechanism for breast cancer biomarker detection: naphthoquinones as specific ligands of human arylamine N-acetyltransferase 1.

Authors:  Nicola Laurieri; James E Egleton; Amy Varney; Cyrille C Thinnes; Camilo E Quevedo; Peter T Seden; Sam Thompson; Fernando Rodrigues-Lima; Julien Dairou; Jean-Marie Dupret; Angela J Russell; Edith Sim
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

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