Literature DB >> 22320164

Real-time droplet DNA amplification with a new tablet platform.

Stephanie L Angione1, Anuj Chauhan, Anubhav Tripathi.   

Abstract

We present a novel droplet-based tablet platform for temporal polymerase chain reaction (PCR) in microliter droplets. The simple design of the device does not require extensive processing or external equipment, which allows for greater ease of use and integration as a point-of-care diagnostic. We demonstrate its functionality to perform both PCR and reverse-transcription PCR for λ phage DNA and H3 influenza RNA with ramp rates and cycle times consistent with traditional PCR thermal cyclers. We additionally investigate the effect of performing PCR in small volumes on the reaction performance by specifically examining adsorption of reagents at the oil/water interface. We determined that adsorption of Taq polymerase at the biphasic interface reduces yield and impairs reaction performance at standard concentrations. Thus, microdroplet PCR reactions require additional polymerase to achieve sufficient amplification and we project for applications utilizing nanodroplets or picodroplets like digital applications, even greater concentrations of polymerase are required to achieve desired results. Following the adsorption investigation, we evaluated the sensitivity of λ phage PCR on our platform to be less than 2.0 copies/μL with an efficiency of 104.4% and similar sensitivity for reverse-transcription PCR for influenza H3 RNA.

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Year:  2012        PMID: 22320164     DOI: 10.1021/ac202532a

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  8 in total

1.  Sensitive, microliter PCR with consensus degenerate primers for Epstein Barr virus amplification.

Authors:  Christopher R Phaneuf; Kyudam Oh; Nikita Pak; D Curtis Saunders; Christina Conrardy; James P Landers; Suxiang Tong; Craig R Forest
Journal:  Biomed Microdevices       Date:  2013-04       Impact factor: 2.838

2.  A novel subtyping assay for detection of Clostridium difficile virulence genes.

Authors:  Stephanie L Angione; Aartik A Sarma; Aleksey Novikov; Leah Seward; Jennifer H Fieber; Leonard A Mermel; Anubhav Tripathi
Journal:  J Mol Diagn       Date:  2014-01-13       Impact factor: 5.568

3.  One-Step Ligation on RNA Amplification for the Detection of Point Mutations.

Authors:  Lei Zhang; Jingjing Wang; Mia Coetzer; Stephanie Angione; Rami Kantor; Anubhav Tripathi
Journal:  J Mol Diagn       Date:  2015-08-29       Impact factor: 5.568

4.  The rotary zone thermal cycler: a low-power system enabling automated rapid PCR.

Authors:  Michael S Bartsch; Harrison S Edwards; Daniel Lee; Caroline E Moseley; Karen E Tew; Ronald F Renzi; James L Van de Vreugde; Hanyoup Kim; Daniel L Knight; Anupama Sinha; Steven S Branda; Kamlesh D Patel
Journal:  PLoS One       Date:  2015-03-31       Impact factor: 3.240

5.  Instrument for Real-Time Digital Nucleic Acid Amplification on Custom Microfluidic Devices.

Authors:  David A Selck; Rustem F Ismagilov
Journal:  PLoS One       Date:  2016-10-19       Impact factor: 3.240

6.  3D microdevices that perform sample purification and multiplex qRT-PCR for early cancer detection with confirmation of specific RNAs.

Authors:  Yusuke Kimura; Masashi Ikeuchi; Yoshinori Inoue; Koji Ikuta
Journal:  Sci Rep       Date:  2018-11-30       Impact factor: 4.379

Review 7.  Rapid clinical bacteriology and its future impact.

Authors:  Alex van Belkum; Géraldine Durand; Michel Peyret; Sonia Chatellier; Gilles Zambardi; Jacques Schrenzel; Dee Shortridge; Anette Engelhardt; William Michael Dunne
Journal:  Ann Lab Med       Date:  2012-12-17       Impact factor: 3.464

8.  Microdroplet sandwich real-time rt-PCR for detection of pandemic and seasonal influenza subtypes.

Authors:  Stephanie L Angione; Zintis Inde; Christina M Beck; Andrew W Artenstein; Steven M Opal; Anubhav Tripathi
Journal:  PLoS One       Date:  2013-09-16       Impact factor: 3.240

  8 in total

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