Literature DB >> 22315085

Rational design and tuning of ribozyme-based devices.

Joe C Liang1, Christina D Smolke.   

Abstract

A synthetic gene-regulatory device platform was described by modularly assembling three RNA components encoding distinct functions of sensing, transmission, and actuation. The molecular binding at the sensor component is translated by the transmitter component through a strand-displacement event to modulate activity of the actuator component, which then interacts with cellular transcriptional machinery to affect gene expression levels. Here, we provide some general guidelines on linking RNA components to construct gene-regulatory devices and strategies to tune device regulatory activities through an RNA folding -program for specific cellular applications.

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Year:  2012        PMID: 22315085     DOI: 10.1007/978-1-61779-545-9_27

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis.

Authors:  Sukanya Iyer; Mitchel J Doktycz
Journal:  ACS Synth Biol       Date:  2013-09-26       Impact factor: 5.110

2.  Synthetic RNA switches for yeast metabolic engineering: screening recombinant enzyme libraries.

Authors:  Joshua K Michener; Christina D Smolke
Journal:  Methods Mol Biol       Date:  2014

Review 3.  The biological microprocessor, or how to build a computer with biological parts.

Authors:  Gerd Hg Moe-Behrens
Journal:  Comput Struct Biotechnol J       Date:  2013-06-26       Impact factor: 7.271

4.  Rational design of hairpin RNA excited states reveals multi-step transitions.

Authors:  Ge Han; Yi Xue
Journal:  Nat Commun       Date:  2022-03-21       Impact factor: 14.919

5.  Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits.

Authors:  Mario Andrea Marchisio; Moreno Colaiacovo; Ellis Whitehead; Jörg Stelling
Journal:  BMC Syst Biol       Date:  2013-05-27

6.  Multi-objective optimization for RNA design with multiple target secondary structures.

Authors:  Akito Taneda
Journal:  BMC Bioinformatics       Date:  2015-09-03       Impact factor: 3.169

  6 in total

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