Literature DB >> 22313774

A historical perspective for the catalytic reaction mechanism of glycosidase; so as to bring about breakthrough in confusing situation.

Seiya Chiba1.   

Abstract

Various catalytic reaction models have been proposed as the reaction mechanisms of glycosidases, but a reasonable and unitary model capable of interpreting both "inverting" and "retaining" glycosidase reactions remains to be established. As for the models proposed to date, the nucleophilic displacement mechanism and the oxocarbenium ion intermediate mechanism are widely known, but recently the former is widely accepted, and so the general tendency of world opinion appears to favor it. This reaction model, however, is considered to comprise some inconsistencies that cannot be neglected from the viewpoint of reactivity in organic chemistry. While the nucleophilic displacement mechanism is often applied to reactions of glycosidases, it appears unlikely that such reactions actually occur. This review argues that the oxocarbenium ion intermediate reaction mechanism is more rational than the nucleophilic displacement reaction mechanism, as the action mode of glycosidases and related enzymes.

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Year:  2012        PMID: 22313774     DOI: 10.1271/bbb.110713

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  3 in total

1.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

2.  Crystal structure and characterization of the glycoside hydrolase family 62 α-L-arabinofuranosidase from Streptomyces coelicolor.

Authors:  Tomoko Maehara; Zui Fujimoto; Hitomi Ichinose; Mari Michikawa; Koichi Harazono; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2014-01-30       Impact factor: 5.157

3.  Biosynthesis of Oligomeric Anthocyanins from Grape Skin Extracts.

Authors:  Jin-Woo Hwang; Sithranga Boopathy Natarajan; Yon-Suk Kim; Eun-Kyung Kim; Jae Woong Lee; Sang-Ho Moon; Byong-Tae Jeon; Pyo-Jam Park
Journal:  Molecules       Date:  2017-03-21       Impact factor: 4.411

  3 in total

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