Literature DB >> 22310353

Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.

M Man1, S L Close, A D Shaw, G R Bernard, I S Douglas, R J Kaner, D Payen, J-L Vincent, S Fossceco, J M Janes, A G Leishman, L O'Brien, M D Williams, J G N Garcia.   

Abstract

Management of severe sepsis, an acute illness with high morbidity and mortality, suffers from the lack of effective biomarkers and largely empirical predictions of disease progression and therapeutic responses. We conducted a genome-wide association study using a large randomized clinical trial cohort to discover genetic biomarkers of response to therapy and prognosis utilizing novel approaches, including combination markers, to overcome limitations of single-marker analyses. Sepsis prognostic models were dominated by clinical variables with genetic markers less informative. In contrast, evidence for gene-gene interactions were identified for sepsis treatment responses with genetic biomarkers dominating models for predicting therapeutic responses, yielding candidates for replication in other cohorts.

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Year:  2012        PMID: 22310353     DOI: 10.1038/tpj.2012.1

Source DB:  PubMed          Journal:  Pharmacogenomics J        ISSN: 1470-269X            Impact factor:   3.550


  22 in total

Review 1.  Toward Smarter Lumping and Smarter Splitting: Rethinking Strategies for Sepsis and Acute Respiratory Distress Syndrome Clinical Trial Design.

Authors:  Hallie C Prescott; Carolyn S Calfee; B Taylor Thompson; Derek C Angus; Vincent X Liu
Journal:  Am J Respir Crit Care Med       Date:  2016-07-15       Impact factor: 21.405

2.  Genome-wide association study of sepsis in extremely premature infants.

Authors:  Lakshmi Srinivasan; Grier Page; Haresh Kirpalani; Jeffrey C Murray; Abhik Das; Rosemary D Higgins; Waldemar A Carlo; Edward F Bell; Ronald N Goldberg; Kurt Schibler; Beena G Sood; David K Stevenson; Barbara J Stoll; Krisa P Van Meurs; Karen J Johnson; Joshua Levy; Scott A McDonald; Kristin M Zaterka-Baxter; Kathleen A Kennedy; Pablo J Sánchez; Shahnaz Duara; Michele C Walsh; Seetha Shankaran; James L Wynn; C Michael Cotten
Journal:  Arch Dis Child Fetal Neonatal Ed       Date:  2017-03-10       Impact factor: 5.747

Review 3.  Nutritional metabolomics in critical illness.

Authors:  Kenneth B Christopher
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2018-03       Impact factor: 4.294

4.  Finding a needle in the haystack: leveraging bioinformatics to identify a functional genetic risk factor for sepsis death.

Authors:  Nuala J Meyer
Journal:  Crit Care Med       Date:  2015-01       Impact factor: 7.598

5.  Pharmacometabolomics of l-carnitine treatment response phenotypes in patients with septic shock.

Authors:  Michael A Puskarich; Michael A Finkel; Alla Karnovsky; Alan E Jones; Julie Trexel; Brooke N Harris; Kathleen A Stringer
Journal:  Ann Am Thorac Soc       Date:  2015-01

6.  A novel approach for selecting combination clinical markers of pathology applied to a large retrospective cohort of surgically resected pancreatic cysts.

Authors:  David L Masica; Marco Dal Molin; Christopher L Wolfgang; Tyler Tomita; Mohammad R Ostovaneh; Amanda Blackford; Robert A Moran; Joanna K Law; Thomas Barkley; Michael Goggins; Marcia Irene Canto; Meredith Pittman; James R Eshleman; Syed Z Ali; Elliot K Fishman; Ihab R Kamel; Siva P Raman; Atif Zaheer; Nita Ahuja; Martin A Makary; Matthew J Weiss; Kenzo Hirose; John L Cameron; Neda Rezaee; Jin He; Young Joon Ahn; Wenchuan Wu; Yuxuan Wang; Simeon Springer; Luis L Diaz; Nickolas Papadopoulos; Ralph H Hruban; Kenneth W Kinzler; Bert Vogelstein; Rachel Karchin; Anne Marie Lennon
Journal:  J Am Med Inform Assoc       Date:  2016-06-21       Impact factor: 4.497

7.  Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study.

Authors:  Anna Rautanen; Tara C Mills; Anthony C Gordon; Paula Hutton; Michael Steffens; Rosamond Nuamah; Jean-Daniel Chiche; Tom Parks; Stephen J Chapman; Emma E Davenport; Katherine S Elliott; Julian Bion; Peter Lichtner; Thomas Meitinger; Thomas F Wienker; Mark J Caulfield; Charles Mein; Frank Bloos; Ilona Bobek; Paolo Cotogni; Vladimir Sramek; Silver Sarapuu; Makbule Kobilay; V Marco Ranieri; Jordi Rello; Gonzalo Sirgo; Yoram G Weiss; Stefan Russwurm; E Marion Schneider; Konrad Reinhart; Paul A H Holloway; Julian C Knight; Chris S Garrard; James A Russell; Keith R Walley; Frank Stüber; Adrian V S Hill; Charles J Hinds
Journal:  Lancet Respir Med       Date:  2014-12-18       Impact factor: 30.700

8.  GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.

Authors:  Cornelius A Rietveld; Sarah E Medland; Jaime Derringer; Jian Yang; Tõnu Esko; Nicolas W Martin; Harm-Jan Westra; Konstantin Shakhbazov; Abdel Abdellaoui; Arpana Agrawal; Eva Albrecht; Behrooz Z Alizadeh; Najaf Amin; John Barnard; Sebastian E Baumeister; Kelly S Benke; Lawrence F Bielak; Jeffrey A Boatman; Patricia A Boyle; Gail Davies; Christiaan de Leeuw; Niina Eklund; Daniel S Evans; Rudolf Ferhmann; Krista Fischer; Christian Gieger; Håkon K Gjessing; Sara Hägg; Jennifer R Harris; Caroline Hayward; Christina Holzapfel; Carla A Ibrahim-Verbaas; Erik Ingelsson; Bo Jacobsson; Peter K Joshi; Astanand Jugessur; Marika Kaakinen; Stavroula Kanoni; Juha Karjalainen; Ivana Kolcic; Kati Kristiansson; Zoltán Kutalik; Jari Lahti; Sang H Lee; Peng Lin; Penelope A Lind; Yongmei Liu; Kurt Lohman; Marisa Loitfelder; George McMahon; Pedro Marques Vidal; Osorio Meirelles; Lili Milani; Ronny Myhre; Marja-Liisa Nuotio; Christopher J Oldmeadow; Katja E Petrovic; Wouter J Peyrot; Ozren Polasek; Lydia Quaye; Eva Reinmaa; John P Rice; Thais S Rizzi; Helena Schmidt; Reinhold Schmidt; Albert V Smith; Jennifer A Smith; Toshiko Tanaka; Antonio Terracciano; Matthijs J H M van der Loos; Veronique Vitart; Henry Völzke; Jürgen Wellmann; Lei Yu; Wei Zhao; Jüri Allik; John R Attia; Stefania Bandinelli; François Bastardot; Jonathan Beauchamp; David A Bennett; Klaus Berger; Laura J Bierut; Dorret I Boomsma; Ute Bültmann; Harry Campbell; Christopher F Chabris; Lynn Cherkas; Mina K Chung; Francesco Cucca; Mariza de Andrade; Philip L De Jager; Jan-Emmanuel De Neve; Ian J Deary; George V Dedoussis; Panos Deloukas; Maria Dimitriou; Guðny Eiríksdóttir; Martin F Elderson; Johan G Eriksson; David M Evans; Jessica D Faul; Luigi Ferrucci; Melissa E Garcia; Henrik Grönberg; Vilmundur Guðnason; Per Hall; Juliette M Harris; Tamara B Harris; Nicholas D Hastie; Andrew C Heath; Dena G Hernandez; Wolfgang Hoffmann; Adriaan Hofman; Rolf Holle; Elizabeth G Holliday; Jouke-Jan Hottenga; William G Iacono; Thomas Illig; Marjo-Riitta Järvelin; Mika Kähönen; Jaakko Kaprio; Robert M Kirkpatrick; Matthew Kowgier; Antti Latvala; Lenore J Launer; Debbie A Lawlor; Terho Lehtimäki; Jingmei Li; Paul Lichtenstein; Peter Lichtner; David C Liewald; Pamela A Madden; Patrik K E Magnusson; Tomi E Mäkinen; Marco Masala; Matt McGue; Andres Metspalu; Andreas Mielck; Michael B Miller; Grant W Montgomery; Sutapa Mukherjee; Dale R Nyholt; Ben A Oostra; Lyle J Palmer; Aarno Palotie; Brenda W J H Penninx; Markus Perola; Patricia A Peyser; Martin Preisig; Katri Räikkönen; Olli T Raitakari; Anu Realo; Susan M Ring; Samuli Ripatti; Fernando Rivadeneira; Igor Rudan; Aldo Rustichini; Veikko Salomaa; Antti-Pekka Sarin; David Schlessinger; Rodney J Scott; Harold Snieder; Beate St Pourcain; John M Starr; Jae Hoon Sul; Ida Surakka; Rauli Svento; Alexander Teumer; Henning Tiemeier; Frank J A van Rooij; David R Van Wagoner; Erkki Vartiainen; Jorma Viikari; Peter Vollenweider; Judith M Vonk; Gérard Waeber; David R Weir; H-Erich Wichmann; Elisabeth Widen; Gonneke Willemsen; James F Wilson; Alan F Wright; Dalton Conley; George Davey-Smith; Lude Franke; Patrick J F Groenen; Albert Hofman; Magnus Johannesson; Sharon L R Kardia; Robert F Krueger; David Laibson; Nicholas G Martin; Michelle N Meyer; Danielle Posthuma; A Roy Thurik; Nicholas J Timpson; André G Uitterlinden; Cornelia M van Duijn; Peter M Visscher; Daniel J Benjamin; David Cesarini; Philipp D Koellinger
Journal:  Science       Date:  2013-05-30       Impact factor: 47.728

9.  Genetic Predisposition to the Mortality in Septic Shock Patients: From GWAS to the Identification of a Regulatory Variant Modulating the Activity of a CISH Enhancer.

Authors:  Florian Rosier; Audrey Brisebarre; Claire Dupuis; Sabrina Baaklini; Denis Puthier; Christine Brun; Lydie C Pradel; Pascal Rihet; Didier Payen
Journal:  Int J Mol Sci       Date:  2021-05-29       Impact factor: 5.923

10.  A functional synonymous coding variant in the IL1RN gene is associated with survival in septic shock.

Authors:  Nuala J Meyer; Jane F Ferguson; Rui Feng; Fan Wang; Parth N Patel; Mingyao Li; Chenyi Xue; Liming Qu; Yichuan Liu; John H Boyd; James A Russell; Jason D Christie; Keith R Walley; Muredach P Reilly
Journal:  Am J Respir Crit Care Med       Date:  2014-09-15       Impact factor: 30.528

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