Literature DB >> 22308419

Environmental stress increases the entry of cytoplasmic organellar DNA into the nucleus in plants.

Dong Wang1, Andrew H Lloyd, Jeremy N Timmis.   

Abstract

Mitochondria and chloroplasts (photosynthetic members of the plastid family of cytoplasmic organelles) in eukaryotic cells originated more than a billion years ago when an ancestor of the nucleated cell engulfed two different prokaryotes in separate sequential events. Extant cytoplasmic organellar genomes contain very few genes compared with their candidate free-living ancestors, as most have functionally relocated to the nucleus. The first step in functional relocation involves the integration of inactive DNA fragments into nuclear chromosomes, and this process continues at high frequency with attendant genetic, genomic, and evolutionary consequences. Using two different transplastomic tobacco lines, we show that DNA migration from chloroplasts to the nucleus is markedly increased by mild heat stress. In addition, we show that insertion of mitochondrial DNA fragments during the repair of induced double-strand breaks is increased by heat stress. The experiments demonstrate that the nuclear influx of organellar DNA is a potentially a source of mutation for nuclear genomes that is highly susceptible to temperature fluctuations that are well within the range experienced naturally.

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Mesh:

Year:  2012        PMID: 22308419      PMCID: PMC3289323          DOI: 10.1073/pnas.1117890109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus.

Authors:  R S Millen; R G Olmstead; K L Adams; J D Palmer; N T Lao; L Heggie; T A Kavanagh; J M Hibberd; J C Gray; C W Morden; P J Calie; L S Jermiin; K H Wolfe
Journal:  Plant Cell       Date:  2001-03       Impact factor: 11.277

2.  Translocation of cytochrome c from the mitochondria to the cytosol occurs during heat-induced programmed cell death in cucumber plants.

Authors:  J Balk; C J Leaver; P F McCabe
Journal:  FEBS Lett       Date:  1999-12-10       Impact factor: 4.124

3.  Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants.

Authors:  K L Adams; D O Daley; Y L Qiu; J Whelan; J D Palmer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

4.  Organelle evolution meets biotechnology.

Authors:  Chun Y Huang; Michael A Ayliffe; Jeremy N Timmis
Journal:  Nat Biotechnol       Date:  2003-05       Impact factor: 54.908

5.  High-frequency gene transfer from the chloroplast genome to the nucleus.

Authors:  Sandra Stegemann; Stefanie Hartmann; Stephanie Ruf; Ralph Bock
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-19       Impact factor: 11.205

6.  Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.

Authors:  William Martin; Tamas Rujan; Erik Richly; Andrea Hansen; Sabine Cornelsen; Thomas Lins; Dario Leister; Bettina Stoebe; Masami Hasegawa; David Penny
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

7.  Mitochondrial DNA repairs double-strand breaks in yeast chromosomes.

Authors:  M Ricchetti; C Fairhead; B Dujon
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

8.  Hydrogen peroxide protects tobacco from oxidative stress by inducing a set of antioxidant enzymes.

Authors:  T Gechev; I Gadjev; F Van Breusegem; D Inzé; S Dukiandjiev; V Toneva; I Minkov
Journal:  Cell Mol Life Sci       Date:  2002-04       Impact factor: 9.261

9.  Direct measurement of the transfer rate of chloroplast DNA into the nucleus.

Authors:  Chun Y Huang; Michael A Ayliffe; Jeremy N Timmis
Journal:  Nature       Date:  2003-02-05       Impact factor: 49.962

10.  Species-specific double-strand break repair and genome evolution in plants.

Authors:  A Kirik; S Salomon; H Puchta
Journal:  EMBO J       Date:  2000-10-16       Impact factor: 11.598

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  21 in total

Review 1.  Evolution and biology of supernumerary B chromosomes.

Authors:  Andreas Houben; Ali Mohammad Banaei-Moghaddam; Sonja Klemme; Jeremy N Timmis
Journal:  Cell Mol Life Sci       Date:  2013-08-03       Impact factor: 9.261

Review 2.  Horizontal gene transfer in plants.

Authors:  Caihua Gao; Xiaodong Ren; Annaliese S Mason; Honglei Liu; Meili Xiao; Jiana Li; Donghui Fu
Journal:  Funct Integr Genomics       Date:  2013-10-17       Impact factor: 3.410

3.  Non-coding RNAs' partitioning in the evolution of photosynthetic organisms via energy transduction and redox signaling.

Authors:  Christos Kotakis
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea.

Authors:  Shijulal Nelson-Sathi; Tal Dagan; Giddy Landan; Arnold Janssen; Mike Steel; James O McInerney; Uwe Deppenmeier; William F Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-26       Impact factor: 11.205

5.  Nuclear genome diversity in somatic cells is accelerated by environmental stress.

Authors:  Dong Wang; Andrew H Lloyd; Jeremy N Timmis
Journal:  Plant Signal Behav       Date:  2012-04-20

Review 6.  Numtogenesis as a mechanism for development of cancer.

Authors:  Keshav K Singh; Aaheli Roy Choudhury; Hemant K Tiwari
Journal:  Semin Cancer Biol       Date:  2017-05-13       Impact factor: 15.707

Review 7.  Human mitochondrial DNA: roles of inherited and somatic mutations.

Authors:  Eric A Schon; Salvatore DiMauro; Michio Hirano
Journal:  Nat Rev Genet       Date:  2012-12       Impact factor: 53.242

8.  Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes.

Authors:  Uwe-G Maier; Stefan Zauner; Christian Woehle; Kathrin Bolte; Franziska Hempel; John F Allen; William F Martin
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

9.  Cytoplasmic organelle DNA preferentially inserts into open chromatin.

Authors:  Dong Wang; Jeremy N Timmis
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

10.  Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing.

Authors:  Jose Alfredo Samaniego Castruita; Marie Lisandra Zepeda Mendoza; Ross Barnett; Nathan Wales; M Thomas P Gilbert
Journal:  BMC Bioinformatics       Date:  2015-07-28       Impact factor: 3.169

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