Literature DB >> 2230738

Variable regions on the genome of Malawi isolates of African swine fever virus.

K J Sumption1, G H Hutchings, P J Wilkinson, L K Dixon.   

Abstract

Restriction enzyme site mapping showed that most BamHI and all ClaI sites were conserved on the genomes of 17 African swine fever virus isolates from separate disease outbreaks that occurred between 1982 and 1989 in Malawi. However, frequent variation between virus genomes did occur due to addition or deletion of DNA sequences at various positions along the genome and 11 virus genotypes could thus be distinguished among the 17 isolates analysed. Length variations occurred at 10 different loci on the virus genome. These variable regions were located between the left DNA terminus and a position up to 48 kb from that terminus, in the centre of the genome 90 to 93 kb from the left DNA terminus and between the right DNA terminus and a position 22 kb from that terminus. Length variations in most of these regions were small (less than 1 kb) but variations of about 4 kb occurred in a region up to 20 kb from the left DNA terminus.

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Year:  1990        PMID: 2230738     DOI: 10.1099/0022-1317-71-10-2331

Source DB:  PubMed          Journal:  J Gen Virol        ISSN: 0022-1317            Impact factor:   3.891


  13 in total

1.  Intra-genotypic resolution of African swine fever viruses from an East African domestic pig cycle: a combined p72-CVR approach.

Authors:  Baratang A Lubisi; Armanda Duarte Slager Bastos; Rahana M Dwarka; Wilna Vosloo
Journal:  Virus Genes       Date:  2007-08-03       Impact factor: 2.332

2.  African swine fever virus multigene family 360 and 530 genes are novel macrophage host range determinants.

Authors:  L Zsak; Z Lu; T G Burrage; J G Neilan; G F Kutish; D M Moore; D L Rock
Journal:  J Virol       Date:  2001-04       Impact factor: 5.103

3.  Novel swine virulence determinant in the left variable region of the African swine fever virus genome.

Authors:  J G Neilan; L Zsak; Z Lu; G F Kutish; C L Afonso; D L Rock
Journal:  J Virol       Date:  2002-04       Impact factor: 5.103

4.  Multigene families in African swine fever virus: family 505.

Authors:  J M Rodriguez; R J Yañez; R Pan; J F Rodriguez; M L Salas; E Viñuela
Journal:  J Virol       Date:  1994-04       Impact factor: 5.103

5.  A comparative analysis on the synonymous codon usage pattern in viral functional genes and their translational initiation region of ASFV.

Authors:  Jian-Hua Zhou; Zong-Liang Gao; Dong-Jie Sun; Yao-Zhong Ding; Jie Zhang; Laszlo Stipkovits; Susan Szathmary; Zygmunt Pejsak; Yong-Sheng Liu
Journal:  Virus Genes       Date:  2012-11-16       Impact factor: 2.332

6.  Genetic characterisation of African swine fever viruses from recent and historical outbreaks in Sardinia (1978-2009).

Authors:  Monica Giammarioli; Carmina Gallardo; Annalisa Oggiano; Carmen Iscaro; Raquel Nieto; Claudia Pellegrini; Silvia Dei Giudici; Marisa Arias; Gian Mario De Mia
Journal:  Virus Genes       Date:  2011-03-05       Impact factor: 2.332

7.  Molecular characterisation of African swine fever viruses from Nigeria (2003-2006) recovers multiple virus variants and reaffirms CVR epidemiological utility.

Authors:  Olajide A Owolodun; Armanda D S Bastos; John F Antiabong; Mosunmola E Ogedengbe; Pius S Ekong; Bitrus Yakubu
Journal:  Virus Genes       Date:  2010-01-06       Impact factor: 2.332

8.  The African swine fever virus protein j4R binds to the alpha chain of nascent polypeptide-associated complex.

Authors:  Lynnette C Goatley; Steve R F Twigg; James E Miskin; Paul Monaghan; René St-Arnaud; Geoffrey L Smith; Linda K Dixon
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

9.  Characterization and molecular basis of heterogeneity of the African swine fever virus envelope protein p54.

Authors:  F Rodriguez; C Alcaraz; A Eiras; R J Yáñez; J M Rodriguez; C Alonso; J F Rodriguez; J M Escribano
Journal:  J Virol       Date:  1994-11       Impact factor: 5.103

10.  African swine fever virus multigene family 360 genes affect virus replication and generalization of infection in Ornithodoros porcinus ticks.

Authors:  T G Burrage; Z Lu; J G Neilan; D L Rock; L Zsak
Journal:  J Virol       Date:  2004-03       Impact factor: 5.103

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