Literature DB >> 22306294

Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network.

Laura A Simmons Kovacs1, Michael B Mayhew, David A Orlando, Yuanjie Jin, Qingyun Li, Chenchen Huang, Steven I Reed, Sayan Mukherjee, Steven B Haase.   

Abstract

During embryonic cell cycles, B-cyclin-CDKs function as the core component of an autonomous oscillator. Current models for the cell-cycle oscillator in nonembryonic cells are slightly more complex, incorporating multiple G1, S phase, and mitotic cyclin-CDK complexes. However, periodic events persist in yeast cells lacking all S phase and mitotic B-cyclin genes, challenging the assertion that cyclin-CDK complexes are essential for oscillations. These and other results led to the proposal that a network of sequentially activated transcription factors functions as an underlying cell-cycle oscillator. Here we examine the individual contributions of a transcription factor network and cyclin-CDKs to the maintenance of cell-cycle oscillations. Our findings suggest that while cyclin-CDKs are not required for oscillations, they do contribute to oscillation robustness. A model emerges in which cyclin expression (thereby, CDK activity) is entrained to an autonomous transcriptional oscillator. CDKs then modulate oscillator function and serve as effectors of the oscillator. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22306294      PMCID: PMC3578314          DOI: 10.1016/j.molcel.2011.12.033

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  33 in total

Review 1.  Recycling the cell cycle: cyclins revisited.

Authors:  Andrew W Murray
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  A genomewide oscillation in transcription gates DNA replication and cell cycle.

Authors:  Robert R Klevecz; James Bolen; Gerald Forrest; Douglas B Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-20       Impact factor: 11.205

3.  Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity.

Authors:  Zheng Chen; Elizabeth A Odstrcil; Benjamin P Tu; Steven L McKnight
Journal:  Science       Date:  2007-06-29       Impact factor: 47.728

4.  Changes in a SWI4,6-DNA-binding complex occur at the time of HO gene activation in yeast.

Authors:  M R Taba; I Muroff; D Lydall; G Tebb; K Nasmyth
Journal:  Genes Dev       Date:  1991-11       Impact factor: 11.361

5.  The rate of cell growth is governed by cell cycle stage.

Authors:  Alexi I Goranov; Michael Cook; Marketa Ricicova; Giora Ben-Ari; Christian Gonzalez; Carl Hansen; Mike Tyers; Angelika Amon
Journal:  Genes Dev       Date:  2009-06-15       Impact factor: 11.361

6.  Genetic Control of the Cell Division Cycle in Yeast: V. Genetic Analysis of cdc Mutants.

Authors:  L H Hartwell; R K Mortimer; J Culotti; M Culotti
Journal:  Genetics       Date:  1973-06       Impact factor: 4.562

7.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Authors:  P T Spellman; G Sherlock; M Q Zhang; V R Iyer; K Anders; M B Eisen; P O Brown; D Botstein; B Futcher
Journal:  Mol Biol Cell       Date:  1998-12       Impact factor: 4.138

8.  S-phase-promoting cyclin-dependent kinases prevent re-replication by inhibiting the transition of replication origins to a pre-replicative state.

Authors:  C Dahmann; J F Diffley; K A Nasmyth
Journal:  Curr Biol       Date:  1995-11-01       Impact factor: 10.834

9.  Rapid degradation of the G1 cyclin Cln2 induced by CDK-dependent phosphorylation.

Authors:  S Lanker; M H Valdivieso; C Wittenberg
Journal:  Science       Date:  1996-03-15       Impact factor: 47.728

10.  Periodic cell cycle changes in the rate of CO2 production in the fission yeast Schizosaccharomyces pombe persist after a block to protein synthesis.

Authors:  B Novak; J M Mitchison
Journal:  J Cell Sci       Date:  1987-03       Impact factor: 5.285

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  36 in total

Review 1.  Create, activate, destroy, repeat: Cdk1 controls proliferation by limiting transcription factor activity.

Authors:  Jennifer A Benanti
Journal:  Curr Genet       Date:  2015-11-21       Impact factor: 3.886

2.  Model Rejection and Parameter Reduction via Time Series.

Authors:  Bree Cummins; Tomas Gedeon; Shaun Harker; Konstantin Mischaikow
Journal:  SIAM J Appl Dyn Syst       Date:  2018-05-31       Impact factor: 2.316

Review 3.  Topology and control of the cell-cycle-regulated transcriptional circuitry.

Authors:  Steven B Haase; Curt Wittenberg
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

4.  The CDK-APC/C Oscillator Predominantly Entrains Periodic Cell-Cycle Transcription.

Authors:  Sahand Jamal Rahi; Kresti Pecani; Andrej Ondracka; Catherine Oikonomou; Frederick R Cross
Journal:  Cell       Date:  2016-04-07       Impact factor: 41.582

5.  Silencing of CDK2, but not CDK1, separates mitogenic from anti-apoptotic signaling, sensitizing p53 defective cells for synthetic lethality.

Authors:  Tatyana S Nekova; Susanne Kneitz; Hermann Einsele; Ralf Bargou; Gernot Stuhler
Journal:  Cell Cycle       Date:  2016-11-10       Impact factor: 4.534

6.  The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle.

Authors:  Chun-Yi Cho; Christina M Kelliher; Steven B Haase
Journal:  Cell Cycle       Date:  2019-02-05       Impact factor: 4.534

7.  Autonomous Boolean modelling of developmental gene regulatory networks.

Authors:  Xianrui Cheng; Mengyang Sun; Joshua E S Socolar
Journal:  J R Soc Interface       Date:  2012-10-03       Impact factor: 4.118

8.  Radiation-induced cellular senescence results from a slippage of long-term G2 arrested cells into G1 phase.

Authors:  Caiyong Ye; Xurui Zhang; Jianghua Wan; Lei Chang; Wentao Hu; Zhitong Bing; Sheng Zhang; Junhong Li; Jinpeng He; Jufang Wang; Guangming Zhou
Journal:  Cell Cycle       Date:  2013-04-09       Impact factor: 4.534

9.  Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression.

Authors:  Benjamin D Landry; Claudine E Mapa; Heather E Arsenault; Kristin E Poti; Jennifer A Benanti
Journal:  EMBO J       Date:  2014-04-08       Impact factor: 11.598

10.  Using extremal events to characterize noisy time series.

Authors:  Eric Berry; Bree Cummins; Robert R Nerem; Lauren M Smith; Steven B Haase; Tomas Gedeon
Journal:  J Math Biol       Date:  2020-02-01       Impact factor: 2.259

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