Literature DB >> 22304919

A structure-based mechanism for Arf1-dependent recruitment of coatomer to membranes.

Xinchao Yu1, Marianna Breitman, Jonathan Goldberg.   

Abstract

Budding of COPI-coated vesicles from Golgi membranes requires an Arf family G protein and the coatomer complex recruited from cytosol. Arf is also required with coatomer-related clathrin adaptor complexes to bud vesicles from the trans-Golgi network and endosomal compartments. To understand the structural basis for Arf-dependent recruitment of a vesicular coat to the membrane, we determined the structure of Arf1 bound to the γζ-COP subcomplex of coatomer. Structure-guided biochemical analysis reveals that a second Arf1-GTP molecule binds to βδ-COP at a site common to the γ- and β-COP subunits. The Arf1-binding sites on coatomer are spatially related to PtdIns4,5P(2)-binding sites on the endocytic AP2 complex, providing evidence that the orientation of membrane binding is general for this class of vesicular coat proteins. A bivalent GTP-dependent binding mode has implications for the dynamics of coatomer interaction with the Golgi and for the selection of cargo molecules.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22304919      PMCID: PMC3285272          DOI: 10.1016/j.cell.2012.01.015

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  36 in total

1.  COP I domains required for coatomer integrity, and novel interactions with ARF and ARF-GAP.

Authors:  A Eugster; G Frigerio; M Dale; R Duden
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

Review 2.  The mechanisms of vesicle budding and fusion.

Authors:  Juan S Bonifacino; Benjamin S Glick
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  Crystal structure of the clathrin adaptor protein 1 core.

Authors:  Ekaterina E Heldwein; Eric Macia; Jing Wang; Helen L Yin; Tomas Kirchhausen; Stephen C Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  COPII: a membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum.

Authors:  C Barlowe; L Orci; T Yeung; M Hosobuchi; S Hamamoto; N Salama; M F Rexach; M Ravazzola; M Amherdt; R Schekman
Journal:  Cell       Date:  1994-06-17       Impact factor: 41.582

6.  Structural and functional analysis of the ARF1-ARFGAP complex reveals a role for coatomer in GTP hydrolysis.

Authors:  J Goldberg
Journal:  Cell       Date:  1999-03-19       Impact factor: 41.582

Review 7.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

8.  Nucleotide exchange on ARF mediated by yeast Gea1 protein.

Authors:  A Peyroche; S Paris; C L Jackson
Journal:  Nature       Date:  1996-12-05       Impact factor: 49.962

9.  Structural basis for activation of ARF GTPase: mechanisms of guanine nucleotide exchange and GTP-myristoyl switching.

Authors:  J Goldberg
Journal:  Cell       Date:  1998-10-16       Impact factor: 41.582

10.  Dynamic structure of membrane-anchored Arf*GTP.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Nat Struct Mol Biol       Date:  2010-07-04       Impact factor: 15.369

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  55 in total

1.  Crystallization and preliminary X-ray analysis of the C-terminal domain of δ-COP, a medium-sized subunit of the COPI complex involved in membrane trafficking.

Authors:  Kai Deng; Feng Gao; Peng Zheng; Weimin Gong; Zhe Sun
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-06-28

Review 2.  Structures and mechanisms of vesicle coat components and multisubunit tethering complexes.

Authors:  Lauren P Jackson; Daniel Kümmel; Karin M Reinisch; David J Owen
Journal:  Curr Opin Cell Biol       Date:  2012-06-22       Impact factor: 8.382

Review 3.  p24 family proteins: key players in the regulation of trafficking along the secretory pathway.

Authors:  Noelia Pastor-Cantizano; Juan Carlos Montesinos; César Bernat-Silvestre; María Jesús Marcote; Fernando Aniento
Journal:  Protoplasma       Date:  2015-07-30       Impact factor: 3.356

4.  HIV-1 Nef hijacks clathrin coats by stabilizing AP-1:Arf1 polygons.

Authors:  Qing-Tao Shen; Xuefeng Ren; Rui Zhang; Il-Hyung Lee; James H Hurley
Journal:  Science       Date:  2015-10-23       Impact factor: 47.728

Review 5.  Retrograde traffic from the Golgi to the endoplasmic reticulum.

Authors:  Anne Spang
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

Review 6.  Functional insights from studies on the structure of the nuclear pore and coat protein complexes.

Authors:  Thomas Schwartz
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

7.  9Å structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments.

Authors:  Svetlana O Dodonova; Patrick Aderhold; Juergen Kopp; Iva Ganeva; Simone Röhling; Wim J H Hagen; Irmgard Sinning; Felix Wieland; John A G Briggs
Journal:  Elife       Date:  2017-06-16       Impact factor: 8.140

8.  The exomer cargo adaptor structure reveals a novel GTPase-binding domain.

Authors:  Jon E Paczkowski; Brian C Richardson; Amanda M Strassner; J Christopher Fromme
Journal:  EMBO J       Date:  2012-09-21       Impact factor: 11.598

9.  Integrating structural and evolutionary data to interpret variation and pathogenicity in adapter protein complex 4.

Authors:  John E Gadbery; Abin Abraham; Carli D Needle; Christopher Moth; Jonathan Sheehan; John A Capra; Lauren P Jackson
Journal:  Protein Sci       Date:  2020-04-25       Impact factor: 6.725

10.  BIG1, a brefeldin A-inhibited guanine nucleotide-exchange protein modulates ATP-binding cassette transporter A-1 trafficking and function.

Authors:  Sisi Lin; Chun Zhou; Edward Neufeld; Yu-Hua Wang; Suo-Wen Xu; Liang Lu; Ying Wang; Zhi-Ping Liu; Dong Li; Cuixian Li; Shaorui Chen; Kang Le; Heqing Huang; Peiqing Liu; Joel Moss; Martha Vaughan; Xiaoyan Shen
Journal:  Arterioscler Thromb Vasc Biol       Date:  2012-12-06       Impact factor: 8.311

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