Literature DB >> 22302572

pymzML--Python module for high-throughput bioinformatics on mass spectrometry data.

Till Bald1, Johannes Barth, Anna Niehues, Michael Specht, Michael Hippler, Christian Fufezan.   

Abstract

SUMMARY: pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra.
AVAILABILITY AND IMPLEMENTATION: pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed. CONTACT: christian@fufezan.net.

Mesh:

Year:  2012        PMID: 22302572     DOI: 10.1093/bioinformatics/bts066

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  30 in total

1.  Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics.

Authors:  Anton A Goloborodko; Lev I Levitsky; Mark V Ivanov; Mikhail V Gorshkov
Journal:  J Am Soc Mass Spectrom       Date:  2013-01-05       Impact factor: 3.109

2.  The Vac14-interaction network is linked to regulators of the endolysosomal and autophagic pathway.

Authors:  Ulf Schulze; Beate Vollenbröker; Daniela A Braun; Truc Van Le; Daniel Granado; Joachim Kremerskothen; Benjamin Fränzel; Rafael Klosowski; Johannes Barth; Christian Fufezan; Dirk A Wolters; Hermann Pavenstädt; Thomas Weide
Journal:  Mol Cell Proteomics       Date:  2014-02-27       Impact factor: 5.911

3.  Van Krevelen diagram visualization of high resolution-mass spectrometry metabolomics data with OpenVanKrevelen.

Authors:  Stephen A Brockman; Eric V Roden; Adrian D Hegeman
Journal:  Metabolomics       Date:  2018-03-06       Impact factor: 4.290

4.  Characterization of five subgroups of the sieve element occlusion gene family in Glycine max reveals genes encoding non-forisome P-proteins, forisomes and forisome tails.

Authors:  Sascia Zielonka; Antonia M Ernst; Susan Hawat; Richard M Twyman; Dirk Prüfer; Gundula A Noll
Journal:  Plant Mol Biol       Date:  2014-06-14       Impact factor: 4.076

5.  N-Glycoproteomic Characterization of Mannosidase and Xylosyltransferase Mutant Strains of Chlamydomonasreinhardtii.

Authors:  Stefan Schulze; Anne Oltmanns; Nick Machnik; Gai Liu; Nannan Xu; Niklas Jarmatz; Martin Scholz; Kazuhiko Sugimoto; Christian Fufezan; Kaiyao Huang; Michael Hippler
Journal:  Plant Physiol       Date:  2017-12-29       Impact factor: 8.340

6.  Automating data analysis for two-dimensional gas chromatography/time-of-flight mass spectrometry non-targeted analysis of comparative samples.

Authors:  Ivan A Titaley; O Maduka Ogba; Leah Chibwe; Eunha Hoh; Paul H-Y Cheong; Staci L Massey Simonich
Journal:  J Chromatogr A       Date:  2018-02-07       Impact factor: 4.759

7.  The interplay of light and oxygen in the reactive oxygen stress response of Chlamydomonas reinhardtii dissected by quantitative mass spectrometry.

Authors:  Johannes Barth; Sonja Verena Bergner; Daniel Jaeger; Anna Niehues; Stefan Schulze; Martin Scholz; Christian Fufezan
Journal:  Mol Cell Proteomics       Date:  2014-01-29       Impact factor: 5.911

8.  The metabolic status drives acclimation of iron deficiency responses in Chlamydomonas reinhardtii as revealed by proteomics based hierarchical clustering and reverse genetics.

Authors:  Ricarda Höhner; Johannes Barth; Leonardo Magneschi; Daniel Jaeger; Anna Niehues; Till Bald; Arthur Grossman; Christian Fufezan; Michael Hippler
Journal:  Mol Cell Proteomics       Date:  2013-07-02       Impact factor: 5.911

9.  Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.

Authors:  Philipp Wiemann; Christian M K Sieber; Katharina W von Bargen; Lena Studt; Eva-Maria Niehaus; Jose J Espino; Kathleen Huß; Caroline B Michielse; Sabine Albermann; Dominik Wagner; Sonja V Bergner; Lanelle R Connolly; Andreas Fischer; Gunter Reuter; Karin Kleigrewe; Till Bald; Brenda D Wingfield; Ron Ophir; Stanley Freeman; Michael Hippler; Kristina M Smith; Daren W Brown; Robert H Proctor; Martin Münsterkötter; Michael Freitag; Hans-Ulrich Humpf; Ulrich Güldener; Bettina Tudzynski
Journal:  PLoS Pathog       Date:  2013-06-27       Impact factor: 6.823

10.  Statistical Examination of the a and a + 1 Fragment Ions from 193 nm Ultraviolet Photodissociation Reveals Local Hydrogen Bonding Interactions.

Authors:  Lindsay J Morrison; Jake A Rosenberg; Jonathan P Singleton; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2016-05-20       Impact factor: 3.109

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