Literature DB >> 22298004

Expression, purification and preliminary structural analysis of the coiled-coil domain of Deinococcus radiodurans RecN.

Simone Pellegrino1, Daniele de Sanctis, Sean McSweeney, Joanna Timmins.   

Abstract

Deinococcus radiodurans has developed an efficient mechanism which allows the integrity of its entire genome to be fully restored after exposure to very high doses of ionizing radiation. Homologous recombination plays a crucial role in this process. RecN is a protein that belongs to the SMC-like protein family and is suggested to be involved in DNA repair. RecN is composed of a globular domain and an antiparallel coiled-coil region which connects the N- and C-termini. It has been suggested that dimerization of RecN occurs via the coiled-coil domain, but to date there is no structural or biochemical evidence for this. Here, SAXS studies and preliminary X-ray diffraction data of crystals of the purified coiled-coil domain of RecN are presented. The structure was solved by single-wavelength anomalous dispersion using SeMet derivatives, and preliminary electron-density maps support the rod-like model derived from the SAXS data. Model building and refinement are still ongoing.

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Year:  2012        PMID: 22298004      PMCID: PMC3274408          DOI: 10.1107/S1744309111055187

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Molecular architecture of SMC proteins and the yeast cohesin complex.

Authors:  Christian H Haering; Jan Löwe; Andreas Hochwagen; Kim Nasmyth
Journal:  Mol Cell       Date:  2002-04       Impact factor: 17.970

2.  Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA.

Authors:  Michiko Hirano; Tatsuya Hirano
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

3.  The coiled-coil of the human Rad50 DNA repair protein contains specific segments of increased flexibility.

Authors:  John van Noort; Thijn van Der Heijden; Martijn de Jager; Claire Wyman; Roland Kanaar; Cees Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-12       Impact factor: 11.205

4.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

5.  Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks.

Authors:  Martin R Singleton; Mark S Dillingham; Martin Gaudier; Stephen C Kowalczykowski; Dale B Wigley
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

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Authors:  S Doublié
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

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Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08

10.  The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge.

Authors:  T E Melby; C N Ciampaglio; G Briscoe; H P Erickson
Journal:  J Cell Biol       Date:  1998-09-21       Impact factor: 10.539

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  1 in total

Review 1.  A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges.

Authors:  Joanna Timmins; Elin Moe
Journal:  Comput Struct Biotechnol J       Date:  2016-04-07       Impact factor: 7.271

  1 in total

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