Literature DB >> 22297983

Structure of a pectin methylesterase from Yersinia enterocolitica.

Alisdair B Boraston1, D Wade Abbott.   

Abstract

Pectin methylesterases (PMEs) are family 8 carbohydrate esterases (CE8s) which remove the methyl group from methylesterified galacturonic acid (GalA) residues within pectin. Although the role of pectinases such as PMEs within dedicated phytopathogens has been well established, the significance of homologous enzymes found within the genomes of human enteropathogens remains to be determined. Presented here is the low-resolution (3.5 Å) structure of the CE8 from Yersinia enterocolitica (YeCE8). The high degree of structural conservation in the topology of the active-site cleft and catalytic apparatus that is shared with a characterized PME from a bacterial phytopathogen (i) indicates that YeCE8 is active on methylated pectin and (ii) highlights a more prominent role for pectin utilization in Yersinia than in other enteropathogenic species.

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Year:  2012        PMID: 22297983      PMCID: PMC3274387          DOI: 10.1107/S1744309111055400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

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Review 3.  Regulation of pectinolysis in Erwinia chrysanthemi.

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5.  Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria.

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Journal:  Microbiology       Date:  2004-11       Impact factor: 2.777

6.  Structural biology of pectin degradation by Enterobacteriaceae.

Authors:  D Wade Abbott; Alisdair B Boraston
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

7.  Molecular basis of the activity of the phytopathogen pectin methylesterase.

Authors:  Markus Fries; Jessica Ihrig; Keith Brocklehurst; Vladimir E Shevchik; Richard W Pickersgill
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

Review 8.  Scaling and assessment of data quality.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

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  6 in total

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2.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of the pectin methylesterase from the sugar cane weevil Sphenophorus levis.

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Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-02-19       Impact factor: 1.056

3.  The structure of rice weevil pectin methylesterase.

Authors:  David C Teller; Craig A Behnke; Kirk Pappan; Zicheng Shen; John C Reese; Gerald R Reeck; Ronald E Stenkamp
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4.  Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2.

Authors:  Richard McLean; Joanne K Hobbs; Michael D Suits; Sami T Tuomivaara; Darryl R Jones; Alisdair B Boraston; D Wade Abbott
Journal:  J Biol Chem       Date:  2015-07-09       Impact factor: 5.157

5.  Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.

Authors:  Lisa M Kent; Trevor S Loo; Laurence D Melton; Davide Mercadante; Martin A K Williams; Geoffrey B Jameson
Journal:  J Biol Chem       Date:  2015-11-14       Impact factor: 5.157

6.  Processive pectin methylesterases: the role of electrostatic potential, breathing motions and bond cleavage in the rectification of Brownian motions.

Authors:  Davide Mercadante; Laurence D Melton; Geoffrey B Jameson; Martin A K Williams
Journal:  PLoS One       Date:  2014-02-04       Impact factor: 3.240

  6 in total

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