Literature DB >> 22297981

Room-temperature ultrahigh-resolution time-of-flight neutron and X-ray diffraction studies of H/D-exchanged crambin.

Julian C-H Chen1, Zoë Fisher, Andrey Y Kovalevsky, Marat Mustyakimov, B Leif Hanson, Vladimir V Zhurov, Paul Langan.   

Abstract

The room-temperature (RT) X-ray structure of H/D-exchanged crambin is reported at 0.85 Å resolution. As one of the very few proteins refined with anisotropic atomic displacement parameters at two temperatures, the dynamics of atoms in the RT and 100 K structures are compared. Neutron diffraction data from an H/D-exchanged crambin crystal collected at the Protein Crystallography Station (PCS) showed diffraction beyond 1.1 Å resolution. This is the highest resolution neutron diffraction reported to date for a protein crystal and will reveal important details of the anisotropic motions of H and D atoms in protein structures.

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Year:  2012        PMID: 22297981      PMCID: PMC3274385          DOI: 10.1107/S1744309111051499

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

1.  Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin.

Authors:  C Jelsch; M M Teeter; V Lamzin; V Pichon-Pesme; R H Blessing; C Lecomte
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

2.  Unambiguous determination of H-atom positions: comparing results from neutron and high-resolution X-ray crystallography.

Authors:  Anna S Gardberg; Alexis Rae Del Castillo; Kevin L Weiss; Flora Meilleur; Matthew P Blakeley; Dean A A Myles
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

3.  Neutron structure and mechanistic studies of diisopropyl fluorophosphatase (DFPase).

Authors:  Julian C H Chen; Marat Mustyakimov; Benno P Schoenborn; Paul Langan; Marc Michael Blum
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

4.  Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Authors:  Matthew P Blakeley; Federico Ruiz; Raul Cachau; Isabelle Hazemann; Flora Meilleur; Andre Mitschler; Stephan Ginell; Pavel Afonine; Oscar N Ventura; Alexandra Cousido-Siah; Michael Haertlein; Andrzej Joachimiak; Dean Myles; Alberto Podjarny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

5.  Identification of the elusive hydronium ion exchanging roles with a proton in an enzyme at lower pH values.

Authors:  Andrey Y Kovalevsky; B L Hanson; S A Mason; T Yoshida; S Z Fisher; M Mustyakimov; V T Forsyth; M P Blakeley; D A Keen; Paul Langan
Journal:  Angew Chem Int Ed Engl       Date:  2011-05-23       Impact factor: 15.336

6.  Highly ordered crystals of the plant seed protein crambin.

Authors:  M M Teeter; W A Hendrickson
Journal:  J Mol Biol       Date:  1979-01-15       Impact factor: 5.469

7.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

8.  Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement.

Authors:  Marc-Michael Blum; Marat Mustyakimov; Heinz Rüterjans; Kai Kehe; Benno P Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-09       Impact factor: 11.205

9.  Protein crystallography with spallation neutrons.

Authors:  Benno P Schoenborn; Paul Langan
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

10.  Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.

Authors:  Paul D Adams; Marat Mustyakimov; Pavel V Afonine; Paul Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-05-15
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  4 in total

Review 1.  Biophysical highlights from 54 years of macromolecular crystallography.

Authors:  Jane S Richardson; David C Richardson
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

2.  Direct observation of hydrogen atom dynamics and interactions by ultrahigh resolution neutron protein crystallography.

Authors:  Julian C-H Chen; B Leif Hanson; S Zoë Fisher; Paul Langan; Andrey Y Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

3.  Application of profile fitting method to neutron time-of-flight protein single crystal diffraction data collected at the iBIX.

Authors:  Naomine Yano; Taro Yamada; Takaaki Hosoya; Takashi Ohhara; Ichiro Tanaka; Katsuhiro Kusaka
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

4.  Structure determination from single molecule X-ray scattering with three photons per image.

Authors:  Benjamin von Ardenne; Martin Mechelke; Helmut Grubmüller
Journal:  Nat Commun       Date:  2018-06-18       Impact factor: 14.919

  4 in total

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